FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0922, 345 aa 1>>>pF1KB0922 345 - 345 aa - 345 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8509+/-0.000727; mu= 10.4434+/- 0.044 mean_var=130.0422+/-25.756, 0's: 0 Z-trim(114.2): 42 B-trim: 230 in 1/53 Lambda= 0.112469 statistics sampled from 14784 (14825) to 14784 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.455), width: 16 Scan time: 3.270 The best scores are: opt bits E(32554) CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16 ( 345) 2310 385.5 3.6e-107 CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16 ( 346) 2298 383.5 1.4e-106 CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20 ( 372) 1085 186.7 2.6e-47 CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18 ( 376) 1081 186.1 4.1e-47 >>CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16 (345 aa) initn: 2310 init1: 2310 opt: 2310 Z-score: 2037.5 bits: 385.5 E(32554): 3.6e-107 Smith-Waterman score: 2310; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345) 10 20 30 40 50 60 pF1KB0 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGLAFASNSLQRRKKGLLLRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGLAFASNSLQRRKKGLLLRP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 VAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB0 APQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 APQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB0 LIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPDSDDDSSDLVIENRQPPSSNGLSQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPDSDDDSSDLVIENRQPPSSNGLSQG 250 260 270 280 290 300 310 320 330 340 pF1KB0 PPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL ::::::::::::::::::::::::::::::::::::::::::::: CCDS45 PPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL 310 320 330 340 >>CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16 (346 aa) initn: 1697 init1: 1697 opt: 2298 Z-score: 2027.0 bits: 383.5 E(32554): 1.4e-106 Smith-Waterman score: 2298; 99.7% identity (99.7% similar) in 346 aa overlap (1-345:1-346) 10 20 30 40 50 60 pF1KB0 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLG 10 20 30 40 50 60 70 80 90 100 110 pF1KB0 YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKR-EADSSGLAFASNSLQRRKKGLLLR ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: CCDS10 YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKRAEADSSGLAFASNSLQRRKKGLLLR 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB0 PVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVR 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB0 VAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSH 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB0 NLIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPDSDDDSSDLVIENRQPPSSNGLSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 NLIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPDSDDDSSDLVIENRQPPSSNGLSQ 250 260 270 280 290 300 300 310 320 330 340 pF1KB0 GPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL :::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL 310 320 330 340 >>CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20 (372 aa) initn: 1007 init1: 1007 opt: 1085 Z-score: 962.9 bits: 186.7 E(32554): 2.6e-47 Smith-Waterman score: 1100; 57.7% identity (78.5% similar) in 317 aa overlap (1-302:1-308) 10 20 30 40 50 pF1KB0 MARPQRTPARSPD-SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLL : : .: : : . .:::::: ::::::.: :.. . :.:: ::. ::.::..:::. CCDS33 MNRSHRHGAGSGCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB0 GYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKRE-ADSSGLAFASNSLQRRKKGL-- ::.: ::::::..:::. :.:.... : ::...::.: :: : ::....: ..:. : CCDS33 GYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYS--AFGTDTLIKKKNVLTN 70 80 90 100 110 120 130 140 150 160 170 pF1KB0 LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGM .::: : .: ..::.::::: :::.::::.::::::::::.:.:...::::::::: CCDS33 VLRP-DNHRKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGS 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB0 SVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVA ::::.:.:::.:::::::::: ::::.:::::::.::.::::::::.::.::::::::.: CCDS33 SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA 180 190 200 210 220 230 240 250 260 270 280 pF1KB0 NSHNLIVTVKPANQRNNVVR-----GASGRLTGPPSAG-PGPAEP-----DSDDDSSDLV ::.:::.::.:::::::::: :.::. : : : :: : :.. .:.. CCDS33 NSRNLIITVRPANQRNNVVRNSRTSGSSGQSTDNSLLGYPQQIEPSFEPEDEDSEEDDII 240 250 260 270 280 290 290 300 310 320 330 340 pF1KB0 IENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL ::. ::. : : CCDS33 IED------NGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNT 300 310 320 330 340 350 >>CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18 (376 aa) initn: 756 init1: 756 opt: 1081 Z-score: 959.3 bits: 186.1 E(32554): 4.1e-47 Smith-Waterman score: 1107; 59.3% identity (77.2% similar) in 312 aa overlap (14-306:17-323) 10 20 30 40 50 pF1KB0 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDV : ::::::: ::::::.: : . . :..: .:. .:.: . :: CCDS12 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB0 LLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGLAFASNSLQRRKKGL- .::.:.::::::..:::.. .:..:. : ::...:::: : .....:: ::...: CCDS12 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERG-SLGAGSLCRRRRALG 70 80 90 100 110 120 130 140 150 160 170 pF1KB0 LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGM :: .: : : : :.::.::: :::.:::::.::::::::::.:: ..::::::::: CCDS12 ALRDEGP-RRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGA 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB0 SVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVA ::::.:.:::.::::::::.: ::::::::::::.::.::::::::::::::::::::.: CCDS12 SVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIA 180 190 200 210 220 230 240 250 260 270 pF1KB0 NSHNLIVTVKPANQRNNVVRGASGRL---TGPPSAGP----GPAEP-----------DSD ::::::::::::::::::::: :: .:::: : :: : .:: CCDS12 NSHNLIVTVKPANQRNNVVRG--GRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESD 240 250 260 270 280 290 280 290 300 310 320 330 pF1KB0 DDSSDLVIENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRG .:. :.:::. :. . : : .: CCDS12 EDN-DVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRAD 300 310 320 330 340 350 345 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 17:15:35 2016 done: Sat Nov 5 17:15:36 2016 Total Scan time: 3.270 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]