GENSCAN 1.0	Date run:  7-Nov-116	Time: 01:33:45

Sequence gi568815586f:43668112_43886559 : 218448 bp : 38.24% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    532    527    6                               1.05
 1.02 Term -   7806   7320  487  2  1    9   48   268 0.024   8.09
 1.01 Init -  18039  17705  335  0  2   56   54   164 0.055   6.61
 1.00 Prom -  30848  30809   40                              -6.05

 2.04 PlyA -  30897  30892    6                               1.05
 2.03 Term -  31193  31082  112  1  1   28   49   196 0.569   6.75
 2.02 Intr -  42277  42192   86  1  2   99   44    43 0.232  -1.30
 2.01 Init -  43142  43077   66  2  0   68  108    27 0.483   3.82
 2.00 Prom -  50059  50020   40                              -3.85

 3.08 PlyA -  50900  50895    6                               1.05
 3.07 Term -  62591  62265  327  2  0  132   41   160 0.966   9.42
 3.06 Intr -  68548  68270  279  1  0   27  106   151 0.479   7.55
 3.05 Intr -  74444  74346   99  2  0   56   56    98 0.812   2.79
 3.04 Intr -  78127  77935  193  0  1   75  116   113 0.999  11.37
 3.03 Intr -  80498  80339  160  0  1   82   75   163 0.999  12.52
 3.02 Intr -  87150  86225  926  2  2  149   91   565 0.984  52.84
 3.01 Init -  91495  91197  299  1  2   75   78   141 0.178   8.70
 3.00 Prom -  95053  95014   40                              -5.85

 4.00 Prom +  97357  97396   40                              -6.35
 4.01 Init + 100001 100161  161  1  2   57   87    78 0.819   3.95
 4.02 Intr + 103109 103254  146  2  2   57   97    85 0.994   5.31
 4.03 Intr + 104069 104251  183  0  0   44  113   122 0.965   9.14
 4.04 Intr + 104801 104961  161  0  2   68   92   186 0.988  15.79
 4.05 Intr + 105854 105918   65  1  2   68  106    99 0.484   6.30
 4.06 Intr + 114196 114379  184  1  1   54  103   222 0.998  19.17
 4.07 Intr + 116275 116410  136  0  1   52   47    88 0.629   0.32
 4.08 Intr + 117576 117760  185  1  2   34  119    52 0.477   1.49
 4.09 Intr + 118288 118446  159  0  0   13   91   194 0.953  11.46
 4.10 Term + 123523 123693  171  0  0  -14   43   141 0.138  -3.76
 4.11 PlyA + 123763 123768    6                               1.05

 5.09 PlyA - 124425 124420    6                               1.05
 5.08 Term - 127644 127474  171  0  0   88   39   180 0.954   9.94
 5.07 Intr - 129722 129597  126  2  0   63   91   147 0.986  12.46
 5.06 Intr - 131391 131287  105  0  0   87  107    44 0.978   5.69
 5.05 Intr - 132419 132324   96  2  0   21   62   109 0.090   0.89
 5.04 Intr - 134353 134175  179  2  2   27  103    77 0.106   1.82
 5.03 Intr - 136461 136384   78  1  0   89   49    65 0.095   1.30
 5.02 Intr - 137919 137701  219  1  0   74   -8   171 0.117   3.45
 5.01 Init - 138236 138110  127  2  1   53   87   237 0.508  18.47
 5.00 Prom - 162563 162524   40                              -1.05

 6.00 Prom + 174584 174623   40                              -8.05
 6.01 Init + 176541 176817  277  2  1   54  111   114 0.377   7.50
 6.02 Intr + 188802 188926  125  1  2   29  116    22 0.310  -1.52
 6.03 Term + 195776 196288  513  1  0   69   37   271 0.610  13.46
 6.04 PlyA + 196656 196661    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  18039  17665  375  0  0   56   50   172 0.852   6.09
S.002 Init - 132407 132324   84  2  0   42   62   112 0.844   4.87
S.003 Term - 156379 156242  138  1  0   96   50   103 0.929   4.28
S.004 Init - 158079 158002   78  0  0   91   51    56 0.898   1.61


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:43668112_43886559|GENSCAN_predicted_peptide_1|273_aa
MILNEHAAFKHLFNKAHLAPPLIHLTLSGYSTRFREHRVGGKVTDQQDPKAEEFILVQNK
MKSLPCLLLSTQTRQPSDFSIFSPPFPAFYSTKPPLSSPPVLNELLGTPPRRGSTGVSLA
MGGVCGSQGSLPTLLPRQLEAAKLDTAGSGWFRLSRAGTGADLGEVLGQLSGHWDNRPGK
GRGISPVPQSQLRGRGVAWGFQRSRELWGLLSSHTLIWWVFLLSVSGSGNRPNQLGYFQV
IYAQITEPFQAFQSIKFPVAESKAIRPDTFQVL

>gi568815586f:43668112_43886559|GENSCAN_predicted_CDS_1|822_bp
atgattcttaacgagcatgctgccttcaagcatctgtttaacaaagcacatcttgcaccg
cccttaatccatttaaccctgagtggatacagcacacgtttcagagagcacagggttggg
ggtaaggtcaccgatcaacaggatcccaaggcagaagaatttatcttagtacagaacaaa
atgaaaagtctcccatgtctactactttctacacagacacggcaaccatccgatttctca
atcttttccccacctttccccgctttctattccacaaaaccgccattgtcatccccgccc
gttctcaatgagctgttgggtacacctcccagacggggaagtactggggtgtccctggcg
atgggtggggtgtgtggctctcaggggtcactccccacactgctgccaaggcagctagag
gcagcaaagctggacactgctgggtcaggctggttcaggctctctagggcaggtacaggt
gctgaccttggtgaagttctggggcagctctcaggccactgggacaaccgtccagggaag
ggcagaggcatctctcctgtgccacagagccagctcagaggaagaggggtggcctggggt
tttcagcgcagtagggagctgtggggcctgctcagctcccacaccctgatctggtgggtc
ttcctcctctcagtgtctggctctggcaacaggcccaaccagttaggctacttccaagtc
atctatgcccagatcactgagccattccaggcattccagagtataaaattccctgtggca
gaaagtaaggctatcaggccagacacattccaggtcctgtga

>gi568815586f:43668112_43886559|GENSCAN_predicted_peptide_2|87_aa
MNKTENDPSSEDGGRELVNNKQEKRGKSGEDYVLHVGYQLSYSRIGHQPESFRTNAPKDM
ALMSGGMPGSSSRVELEKTTQAQEEQF

>gi568815586f:43668112_43886559|GENSCAN_predicted_CDS_2|264_bp
atgaacaagacagagaatgatccttctagtgaagatggtgggagggagctggtaaacaat
aaacaagagaagagagggaagagtggggaagactatgtcttgcatgttggataccagctc
agctacagcaggatagggcaccagccagagtcattccgaaccaatgcaccaaaagatatg
gctctgatgagtggaggaatgccaggatcttcatctcgagttgaattagaaaaaacgaca
caggcacaggaggagcagttttaa

>gi568815586f:43668112_43886559|GENSCAN_predicted_peptide_3|760_aa
MSHRTWTGFAFIPLSPSGFQADRYTFFPHLRMYSSDPISRLHFLIPWKLGGRRNKRITIV
WRLSELLAPQASVRCWPDFLVLGKRDFISQSGSRNPGPERHCYRRMEEDTDYRIRFSSLC
FFNDHVGFHGTIKSSPSDFIVIEIDEQGQLVNKTIDEPIFKISEIQLEPNNFPKKPKLDL
QNLSLEDGRNQEVHTLIKYTDGDQNHQSGSEKEDTIVDGTSKCEEKADVLSSFLDEKTHE
LLNNFACDVREKWLSKTELIGLPPEFSIGRILDKNQRASLHSAIRQKFPFLVTVGKNSEI
VVKPNLEYKELCHLVSEEEAFDFFKYLDAKKENSKFTFKPDTNKDHRKAVHHFVNKKFGN
LVETKSFSKMNCSAGNPNVVVTVRFREKAHKRGKRPLSECQEGKVIYTAFTLRKENLEMF
EAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNI
RSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVKKKGFVNYYGPQRFG
KGRKVHTDQIGLALLKNEMDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLP
HSMRIFYVHAYTSKIWNEAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKVVLPVLGY
NIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHDI
DVKTKGSHIDETALSLLISFDLDASCYATVCLKEIMKHDV

>gi568815586f:43668112_43886559|GENSCAN_predicted_CDS_3|2283_bp
atgagccaccgcacctggacagggtttgcttttatccctttgtctccctctggcttccaa
gctgacaggtacacttttttcccccatctgcgaatgtactcatctgatcccataagccgc
ctccactttctaattccctggaagcttggaggccggagaaacaagcgaattacaatcgtg
tggaggctcagcgagctgctggcgccacaggcatctgtcaggtgctggcctgacttcctg
gttctggggaaaagagacttcatttcgcagtcgggttcacggaatccagggcctgagagg
cactgttatagaagaatggaagaagatacagattatagaatcaggtttagttctttgtgt
ttctttaatgatcacgttggatttcatggcactataaaaagctcaccaagtgactttatt
gttattgaaattgatgaacagggacagttagttaataagaccatcgatgagcctattttc
aagattagtgaaatacaacttgagccaaataattttcccaaaaaaccaaaactagatctt
caaaatctgtccttagaagatggaagaaaccaagaagttcatactttgattaagtacact
gatggtgaccaaaatcatcagtctggttcagaaaaggaagatactatcgttgatggaact
tccaaatgtgaagaaaaagctgatgttttaagctcctttttggatgaaaaaactcatgag
ttactgaataattttgcctgtgatgtaagagagaagtggctttctaaaacagagctaatt
ggactacctcctgaattctcaataggcagaatccttgacaaaaaccagagggctagttta
cacagtgccattaggcagaaatttccatttttagtaactgtaggaaaaaacagtgaaatt
gttgtaaaaccaaatcttgaatataaagaactttgtcatttggtatctgaagaggaagca
tttgacttttttaaatatttggatgcaaagaaagaaaattccaaatttacctttaaacct
gatacaaacaaagaccacagaaaagctgtccaccattttgtcaacaaaaagtttggaaac
cttgtggaaaccaaatctttttctaaaatgaattgcagtgctggtaatccgaatgtggtg
gtaacagtaagatttcgggaaaaagcacacaaacgtgggaaaaggcctctttctgaatgc
caagaaggaaaagttatatatacagcttttaccctacgaaaggaaaacctggaaatgttt
gaagcgattggttttttagctatcaaacttggtgttattccttcggattttagttatgca
ggccttaaagacaagaaagccatcacctatcaagcaatggttgttagaaaagtgactcca
gagaggttgaaaaatattgaaaaagaaattgaaaagaaaagaatgaatgtctttaatatt
cggtctgtagatgattccctgagacttggtcagctcaaaggaaatcactttgatattgtc
attagaaatttaaaaaaacaaataaatgattctgcaaacctgagggagagaattatggaa
gcaatagaaaatgttaagaaaaaaggctttgtgaattactatggaccacagagatttggg
aagggaaggaaagttcacacagaccaaattggactagctttgctgaagaatgaaatggat
gctaaaggcacactttcattgatgcctgaattcaaagtgcgtgagagagcattgttggag
gcattgcaccgctttggcatgaccgaggaaggttgtatccaggcatggttctctttaccc
cattccatgcgcatattctatgttcacgcatataccagcaaaatttggaatgaggcagta
tcttacagacttgaaacctatggagcaagagtagtgcagggtgatttggtctgtttggat
gaagacattgatgacgagaatttcccaaatagtaaagtggttcttccagtacttggatac
aatattcagtacccgaagaacaaagtagggcagtggtaccatgacatacttagcagagat
ggactacagacatgtaggtttaaagtacctactctgaaactgaatataccaggttgctat
agacagattttgaaacatccctgtaatctctcataccaactaatggaagatcatgacatt
gatgtcaaaacgaaaggttcccacattgatgaaacagctttgtctcttttgatctctttt
gatcttgatgcttcatgctatgctaccgtttgtctgaaggaaataatgaagcatgacgtt
taa

>gi568815586f:43668112_43886559|GENSCAN_predicted_peptide_4|516_aa
MNKPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALL
QTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPKTANTLPSKEAITV
QQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNF
DERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMANA
NILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGV
HQSQIPQVKSSVPKTAIPPDTSCKFRPPELLTNCLQVGVPMTSSVGIHSEKCVVRQFHCV
NLIECTYTNLDDMTYDIPGLYGIAPRLQTYAIQHNTLLNTVSNCNTLLDIKEEIEDEEKT
IEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKNQLNEDPYWKAFDAQEWVST
AILCGRTHGFRRARDFASASEFSCGQKENDGGQILW

>gi568815586f:43668112_43886559|GENSCAN_predicted_CDS_4|1551_bp
atgaacaaacccataacaccatcaacatatgtgcgctgcctcaatgttggactaattagg
aagctgtcagattttattgatcctcaagaaggatggaagaagttagctgtagctattaaa
aaaccatctggtgatgatagatacaatcagtttcacataaggagatttgaagcattactt
caaactggaaaaagtcccacttctgaattactgtttgactggggcaccacaaattgcaca
gttggtgatcttgtggatcttttgatccaaaatgaattttttgctcctgcgagtcttttg
ctcccagatgctgttcccaaaactgctaatacactaccttctaaagaagctataacagtt
cagcaaaaacagatgcctttctgtgacaaagacaggacattgatgacacctgtgcagaat
cttgaacaaagctatatgccacctgactcctcaagtccagaaaataaaagtttagaagtt
agtgatacacgttttcacagtttttcattttatgaattgaagaatgtcacaaataacttt
gatgaacgacccatttctgttggtggtaataaaatgggagagggaggatttggagttgta
tataaaggctacgtaaataacacaactgtggcagtgaagaagcttgcagcaatggttgac
attactactgaagaactgaaacagcagtttgatcaagaaataaaagtaatggcaaatgca
aatatcttactggatgaagcttttactgctaaaatatctgactttggccttgcacgggct
tctgagaagtttgcccagacagtcatgactagcagaattgtgggaacaacagcttatatg
gcaccagaagctttgcgtggagaaataacacccaaatctgatatttacagctttggtgtg
catcagagtcagatcccacaggttaagagctcagtccccaagactgccatcccaccagac
accagttgtaagtttaggcctccagaacttctgaccaactgccttcaagttggagttcct
atgacctcctctgtgggaatacattccgagaaatgtgttgttaggcagtttcattgtgtg
aacctcatagagtgtacttacacaaacctagatgatatgacctacgacatacctgggcta
tatggtattgctcctaggctacaaacgtatgctatacagcataatactctcctgaatact
gtaagcaattgtaacacactgctagatattaaagaagaaattgaagatgaagaaaagaca
attgaagattatattgataaaaagatgaatgatgctgattccacttcagttgaagctatg
tactctgttgctagtcaatgtctgcatgaaaagaaaaataagagaccagacattaagaag
aatcagctgaatgaagatccctactggaaggcatttgatgctcaggaatgggtcagtact
gccattttgtgtggtagaacccatggctttcgcagggcaagagattttgccagtgctagt
gagttttcctgtggccagaaagaaaatgatggaggccagatcctctggtga

>gi568815586f:43668112_43886559|GENSCAN_predicted_peptide_5|366_aa
MTRRGRRRSSHFLGPPAGAAGCTQRRSRELAAAAMSHQTGIQARSLLPSRCRLIRNSGER
RKLAFEAAWLKGACLPPSPTVAQLSPFWSRREELGQWRRLGLQYAVENQASFLFHASEDV
KEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPLLEDKQPCYILFRL
DSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHG
YKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISREAFQALEKL
NNRQLNYVQLIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAE
TEATTD

>gi568815586f:43668112_43886559|GENSCAN_predicted_CDS_5|1101_bp
atgacgcgccggggccggcggaggagcagccacttcctggggccgccggccggggccgct
ggctgcactcagcgccggagccgggagctagcggccgccgccatgtcccaccagaccggc
atccaagcccggtccctgctgccgtcacgttgcagattgatccgaaattcgggggagcga
aggaaattggctttcgaggcggcctggttgaagggggcgtgccttccaccgtccccgaca
gtcgcccaactttcccccttttggtcacgtagggaagagctgggacagtggaggcgactg
gggcttcagtacgctgtcgagaaccaggcgagttttctttttcatgcaagtgaagatgtt
aaagagatctttgccagagccagaaatggaaagtacagacttctgaaaatatctattgaa
aatgagcaacttgtgattggatcatatagtcagccttcagattcctgggataaggattat
gattcctttgttttacccctgttggaggacaaacaaccatgctatatattattcaggtta
gattctcagaatgcccagggatatgaatggatattcattgcatggtctccagatcattct
catgttcgtcaaaaaatgttgtatgcagcaacaagagcaactctgaagaaggaatttgga
ggtggccacattaaagatgaagtatttggaacagtaaaggaagatgtatcattacatgga
tataaaaaatacttgctgtcacaatcttcccctgccccactgactgcagctgaggaagaa
ctacgacagattaaaatcaatgaggtacagactgacgtgggtgtggacactaagcatcaa
acactacaaggagtagcatttcccatttctcgagaagcctttcaggctttggaaaaattg
aataatagacagctcaactatgtgcagttgatcgagatagacaatggggatgagttgact
gcagacttcctttatgaagaagtacatcccaagcagcatgcacacaagcaaagttttgca
aaaccaaaaggtcctgcaggaaaaagaggaattcgaagactaattaggggcccagcggaa
actgaagctactactgattaa

>gi568815586f:43668112_43886559|GENSCAN_predicted_peptide_6|304_aa
MGKDFRYYFQHPWSRMIVAYLVIFFNFLIFAEDPVSHSQTEANVIVVGNCFSFVTNKYPR
GVGWRILKVLLWLLAILTGLIAGKFLFHQRLFGTPFFRGRFGVLELLNFVALFKKLILLL
CVPVMFSLLEQESKGGVEGEAQVGTGAAPGACGPARVPGGHGLGGPTLGAAGQPALDSEG
LSTRASSCGGCAGSPSSAGPPALRWISHGALAASLGGRAQDLQPAMPESPSLPPQWVPAR
PEPPRPAPPPASWHPVPPTAQGLRSAGTLRRDWQAALSAAPVRDPLGEASWASESSGDLE
NLYV

>gi568815586f:43668112_43886559|GENSCAN_predicted_CDS_6|915_bp
atgggtaaagactttcgttactatttccagcatccctggtctcgcatgattgtggcttac
ttggtgatcttctttaacttcttaatatttgcggaggacccagtttctcatagccaaaca
gaagccaatgttattgttgttggaaactgtttttcatttgttacaaataaataccctaga
ggagttggctggaggattttgaaggtgcttctatggctacttgccattctcacaggacta
atagctggcaaatttctgttccatcagcgtttgtttggaacacccttcttcagagggaga
tttggtgtgttggagctactgaactttgtagcccttttcaaaaagctgatcttattactt
tgtgttcctgttatgttctctctcctagagcaggaaagcaagggaggtgtggagggagag
gcacaggtgggaaccggggctgcgcccggcgcttgcgggccagctagagttccgggtggg
catgggcttggcggccccacactcggagctgccggccagccagccctggacagtgagggg
cttagcacccgggccagcagctgtggagggtgcgctgggtcccccagcagtgctggccca
ccagcgctgcgctggatttctcacggggctttagctgcctccctggggggcagggctcag
gacctgcagcctgccatgcctgagtctccctcactccccccgcagtgggttcctgcgcgg
cctgagcctccccgaccagcacctccccctgcttcatggcacccagtcccacccaccgcc
caagggctgaggagtgcaggcacactgcgcagggactggcaggcagctctatctgcagcc
ccagtgcgagatccactgggtgaagccagctgggcttctgagtctagtggggacttggag
aacctttatgtctag