GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:57:46

Sequence gi568815584r:74186464_74402912 : 216449 bp : 48.30% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  11497  11683  187  0  1   58   23   158 0.123   5.56
 1.02 Intr +  16645  16664   20  2  2  113   61    13 0.003  -2.57
 1.03 Intr +  33965  34229  265  1  1   86   71   107 0.613   5.89
 1.04 Term +  35646  35833  188  1  2   95   43    73 0.617   1.15
 1.05 PlyA +  36286  36291    6                               1.05

 2.00 Prom +  52950  52989   40                              -5.86
 2.01 Init +  53099  53468  370  1  1   78   77   379 0.522  32.96
 2.02 Intr +  54719  54803   85  0  1   91   94   114 0.878  11.18
 2.03 Intr +  58702  58825  124  1  1  102   92   220 0.997  24.39
 2.04 Intr +  73139  73319  181  1  1  102   86   254 0.995  26.04
 2.05 Term +  74074  74456  383  2  2  105   42   404 0.803  32.50
 2.06 PlyA +  76255  76260    6                               1.05

 3.21 PlyA -  77652  77647    6                               1.05
 3.20 Term -  91380  91273  108  0  0   48   38   188 0.856   8.31
 3.19 Intr -  92083  91577  507  1  0  -37   39   370 0.257  12.77
 3.18 Intr - 100353 100238  116  1  2  108   75   213 0.169  22.17
 3.17 Intr - 101423 101347   77  1  2  115   94   106 0.995  13.06
 3.16 Intr - 101796 101744   53  0  2   63   99    46 0.887   0.91
 3.15 Intr - 102302 102253   50  0  2   75  119    48 0.900   5.00
 3.14 Intr - 103056 103020   37  0  1   94   99    49 0.848   4.44
 3.13 Intr - 103655 103564   92  0  2   29   82    75 0.909   0.71
 3.12 Intr - 104036 103828  209  1  2   99   64    95 0.921   6.92
 3.11 Intr - 105913 105824   90  0  0  105   94   160 0.998  17.41
 3.10 Intr - 106179 106088   92  0  2   86   94   219 0.884  21.09
 3.09 Intr - 106452 106285  168  0  0   68  100   165 0.211  15.84
 3.08 Intr - 108304 108154  151  0  1   92  -11    51 0.154  -4.24
 3.07 Intr - 108735 108685   51  2  0   86  109    64 0.980   6.32
 3.06 Intr - 109516 109391  126  0  0  120   75   119 0.998  13.59
 3.05 Intr - 109986 109870  117  2  0   68   67   227 0.992  18.18
 3.04 Intr - 111606 111467  140  0  2   62   29   274 0.994  18.16
 3.03 Intr - 113212 113085  128  2  2  142  107   124 0.999  20.10
 3.02 Intr - 113805 113687  119  2  2  116   92    -8 0.972   2.51
 3.01 Init - 116449 116412   38  1  2   81  115    88 0.985   8.32
 3.00 Prom - 121038 120999   40                              -3.46

 4.00 Prom + 124851 124890   40                              -4.46
 4.01 Init + 140704 140710    7  0  1   73   82     0 0.085  -1.02
 4.02 Intr + 151260 151421  162  1  0   85  111    92 0.486  11.15
 4.03 Term + 161725 161738   14  2  2   77   46    15 0.012  -5.44
 4.04 PlyA + 163271 163276    6                               1.05

 5.00 Prom + 167187 167226   40                              -4.16
 5.01 Sngl + 170321 172429 2109  1  0   83   48  2261 0.997 215.88
 5.02 PlyA + 173523 173528    6                               1.05

 6.00 Prom + 189142 189181   40                              -5.96
 6.01 Sngl + 190017 190241  225  2  0   62   42   275 0.999  15.44
 6.02 PlyA + 190957 190962    6                               1.05

 7.02 PlyA - 191013 191008    6                              -0.45
 7.01 Sngl - 191925 191260  666  0  0   77   46   812 0.992  72.08

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  71994  72092   99  2  0   64   46   115 0.883   3.17
S.002 Term - 100353 100211  143  1  2  108   55   241 0.831  20.89


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584r:74186464_74402912|GENSCAN_predicted_peptide_1|219_aa
DGDVFLGDHTAYPVPTAWFQKAWLPEPAISDQKLSALLNPFKKSENMALQDEDEDEEGAV
TLRLRHHKKCTEHCRWGVQAPVCELHGFFMSVSPVLGTQWLLYHIIEQIKTPPPKSLCDC
PSVGYALLSLLPKHTVIMPLKIRQVIAVENIEKDKILGEHSSVLFPKQFVDLIQSFQAPV
TQGGTDHPHFTDERGDEALLAKTIWTQPLPPTCYVTLSK

>gi568815584r:74186464_74402912|GENSCAN_predicted_CDS_1|660_bp
gacggagatgtgttcttgggagaccacacagcctaccccgtgcctactgcatggttccag
aaggcctggcttccagagccagccatcagcgatcagaaactttctgcactgttaaatcca
tttaagaaatctgaaaacatggccttgcaggatgaggatgaggatgaggaaggggctgtt
acactacgattaagacatcacaagaagtgcactgagcactgccgatggggtgttcaggcc
cccgtttgtgagctccatggcttcttcatgtctgtatcaccagtgttgggcacacagtgg
ttgctctaccacatcattgaacaaataaagacaccacctccaaaaagcctctgtgattgc
cctagtgtaggttatgcgctcctttctttgctccccaaacacactgtgattatgccttta
aaaataaggcaagtcattgctgtggagaatatagagaaggacaaaattttaggagagcac
agctctgtactgttcccaaagcagtttgtggacctcatccaatctttccaagcacctgtg
acccagggcggaaccgatcacccccattttactgatgaaaggggagatgaggctttattg
gcaaagacaatctggactcaaccactgccaccgacttgctacgtgaccttgagcaagtga

>gi568815584r:74186464_74402912|GENSCAN_predicted_peptide_2|380_aa
MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGH
LLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDPQSVHLQPLGRASGPLDTSQT
ASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREM
LAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSA
KDGIMDSCAPWLLVQDGFPRRFSKPEYQQFFLGMHKKSLEAAAESGRKPEGERQALPKLD
KMEQDERGPDAQAAISQEELRENSIAVLRAKAQEHSTKVLGTVSGPDSLARSTEKPEEEE
AMDEDRPAERLSPPQLEDMA

>gi568815584r:74186464_74402912|GENSCAN_predicted_CDS_2|1143_bp
atgacggggaaagcaggggaagcgctgagcaagcccaaatccgagacagtggccaagagt
acctcggggggcgccccggccaggtgcactgggttcggcatccaggagatcctgggcttg
aacaaggagcccccgagctcccacccgcgggcagcgctcgacggcctggcccccgggcac
ttgctggcggcgcgctcagtgctcagccccgcgggggtgggcggcatggggcttctgggg
cccggggggctccctggcttctacacgcagcccaccttcctggaagtgctgtccgacccg
cagagcgtccacttgcagccattgggcagagcatcggggccgctggacaccagccagacg
gccagctcggattctgaagatgtttcctccagcgatcgaaaaatgtccaaatctgcttta
aaccagaccaagaaacggaagaagcggcgacacaggacaatctttacctcctaccagcta
gaggagctggagaaggcattcaacgaagcccactacccagacgtctatgcccgggagatg
ctggccatgaaaacggagctgccggaagacaggatacaggtctggttccagaaccgtcga
gccaagtggaggaagcgggagaagtgctggggccggagcagtgtcatggcggagtatggg
ctctacggggccatggtgcggcactccatccccctgcccgagtccatcctcaagtcagcc
aaggatggcatcatggactcctgtgccccgtggctactggttcaagatggctttcccagg
cgcttttctaaacccgaataccaacaattctttctagggatgcacaaaaagtcgctggag
gcagcagccgagtcggggaggaagcccgagggggaacgccaggccctgcccaagctcgac
aagatggagcaggacgagcggggccccgacgctcaggcggccatctcccaggaggaactg
agggagaacagcattgcggtgctccgggccaaagctcaggagcacagcaccaaagtgctg
gggactgtgtctgggccggacagcctggcccggagtaccgagaagccagaggaggaggag
gccatggatgaagacaggccggcggagaggctcagtccaccgcagctggaggacatggct
tag

>gi568815584r:74186464_74402912|GENSCAN_predicted_peptide_3|822_aa
MAVAGPAPGAGARPRLDLQFLQRFLQILKVLFPSWSSQNALMFLTLLCLTLLEQFVIYQV
GLIPSQYYGVLGNKDLEGFKTLTFLAVMLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLH
RLYFRGRAYYTLNVLRDDIDNPDQRISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQ
STGWLGPVSIFGYFILGTVVNKTLMGPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYS
VGWNGSFSENQETCSPQCCLMEPSVWSPDGSSRSSSSGMKSHPFPPGPEPGMWMVPGCLT
DVFSTVGINTFDYLGSILSYVVIAIPIFSGVYGDLSPAELSTLVSKNAFVCIYLISCFTQ
LIDLSTTLSDVAGYTHRIGQLRETLLDMSLKSQDCEILGESEWGLDTPPGWPAAEPADTA
FLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQ
MLTDFGPHGVLFLPQKPFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLV
ARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIG
QQLGMTFISVGHRQSLEKVSELSSSGAGSRAGARAGAGSSFKAAIGADSSSRADTKAEYS
SVAGTTTGLSSGTGDGASSRASTGFSSGGGAKAGTSPGLGSGAGARAGSSFSSGAGASDG
AGSSCAAGAGAGTSSGPRTSFSASVGAEPASGSGAGTKSGYSSRVDARVGAGVGAELSVA
LELELVLLVLKLMVELTPDLALALDLVSELALELEEEKGLPA

>gi568815584r:74186464_74402912|GENSCAN_predicted_CDS_3|2469_bp
atggcggtcgcggggcccgcgcccggagctggcgccaggcccaggttagatctgcaattt
ctccagcggttcctgcagatactgaaggttttgtttccttcttggtcatcacaaaatgcc
ttgatgttcctgacccttttgtgcctgaccctactggagcaatttgtgatctaccaggtt
ggcttgatccccagtcagtactatggggtcctgggaaacaaagacttggaagggtttaag
actctgacattcctggctgtcatgctcattgttctgaactccacgctgaagagctttgat
cagttcacctgcaacctgctgtatgtgagctggaggaaggacctcactgagcaccttcac
cgcctctacttccggggccgtgcgtactacaccctcaacgtgctgcgggatgacatcgat
aacccggaccagcgcatcagccaggacgtggagcgattctgccggcagctcagcagcatg
gccagcaagctcatcatctccccgttcaccctcgtctactacacttaccagtgcttccaa
agcacaggctggctcgggcctgtgagcatcttcgggtatttcatcctggggaccgtggtg
aacaaaactttgatgggccccattgtgatgaagctggtgcatcaggagaagctggaggga
gattttaggttcaagcacatgcagattcgggtgaatgcggagcctgctgctttctacagc
gtgggatggaatgggagcttctcagaaaaccaggagacctgctccccacaatgctgtcta
atggagccaagcgtctggtctcctgacggcagcagcaggagcagcagcagcggcatgaaa
tcccatcccttccctccagggccagaaccgggcatgtggatggttcctgggtgtctcaca
gatgtgttttctacagtcggcatcaacacctttgactatctgggcagcatcctgagttac
gttgtcatcgcaatccccattttcagcggggtctatggagacctgagtcccgcagagctt
agcaccctggtcagcaagaatgcctttgtgtgcatctacctcatcagctgcttcacccag
ctcatcgacctgtccacgacgctctcagatgtggctggctacacgcacagaattgggcag
cttcgggagacgcttctggacatgtccctgaagtcacaggactgcgagatcctgggcgag
agcgagtggggcttggacacacccccagggtggccagcggcagagccagcagacacagca
tttctccttgagcgggtctccatctctgccccctcctctgacaaacccctaatcaaggat
ctgagcctaaagatctccgagggacagagcctgctcatcacaggcaacacgggcactggc
aagacctccttgctccgggttctgggtggcctctggacgagtacacggggctcagtgcag
atgctgacggactttgggccccatggggtgctattcctgccacaaaagccattcttcact
gacgggacccttcgggagcaggtgatatatcccctgaaggaggtctaccccgactcaggt
tctgccgatgatgagaggatcttgaggttcttggaattggcaggcctgtccaacttggtg
gcaaggacagagggcctggaccagcaggtggactggaactggtatgatgttctgtccccg
ggggagatgcaacggctctcctttgcccgactcttctacctgcagccgaagtacgcagtg
cttgatgaagccaccagtgccctgacagaggaagtggagagcgagctctatcgcatcggc
cagcagctggggatgacgttcatcagtgtgggacatcggcagagccttgagaaggtgtca
gaactgtctagctctggagctggatctagggctggtgctagagcaggagcaggctctagc
ttcaaagctgccattggagctgactctagctctagagctgacaccaaagctgaatatagc
tctgtggctggcactacaactggcttaagctctggaacaggtgatggagctagttctaga
gctagcactggctttagctctggaggtggtgccaaagctggcacttcacctggcctaggc
tctggagctggtgctagagctggctctagcttctcatctggtgctggagctagtgatgga
gctggctctagctgtgctgctggtgctggagctggcactagctctggacctagaacttcc
tttagtgccagcgttggtgctgaacctgcttctggctctggagctggcactaaatctggc
tatagctcacgagtggatgccagagttggtgctggagtaggtgcagagctgtctgtagct
ctagagctggagctagtgctgcttgtgctgaagctgatggtagagctgacaccggatctg
gccctagctctggacctggtgtcagaactggcactggagctggaagaggagaaaggtttg
ccagcatga

>gi568815584r:74186464_74402912|GENSCAN_predicted_peptide_4|60_aa
MVGTFPEDSCSVKPTAPKAPIKDPANKQMAIQVANDIAHPRYLGCLLFPEVGAWLAGLSI

>gi568815584r:74186464_74402912|GENSCAN_predicted_CDS_4|183_bp
atggtaggtacgtttcctgaggacagctgctctgtgaagcccactgccccaaaggcacct
atcaaagaccctgcaaacaagcagatggcaatccaggttgccaatgacattgcccatccc
aggtacctgggctgcctgcttttccctgaagtgggagcctggcttgcaggtctttcgatc
tga

>gi568815584r:74186464_74402912|GENSCAN_predicted_peptide_5|702_aa
MTSRNQLVQKVLQELQEAVECEGLEGLIGASLEAKQVLSSFTLPTCREGGPGLQVLEVDS
VALSLYPEDAPRNMLPLVCKGEGSLLFEAASMLLWGDAGLSLELRARTVVEMLLHRHYYL
QGMIDSKVMLQAVRYSLCSEESPEMTSLPPATLEAIFDADVKASCFPSSFSNVWHLYALA
SVLQRNIYSIYPMRNLKIRPYFNRVIRPRRCDHVPSTLHIMWAGQPLTSHFFRHQYFAPV
VGLEEVEAEGAPGVAPALPALAPLSSPAKTLELLNREPGLSYSHLCERYSVTKSTFYRWR
RQSQEHRQKVAARFSAKHFLQDSFHRGGVVPLQQFLQRFPEISRSTYYAWKHELLGSGTC
PALPPREVLGMEELEKLPEEQVAEEELECSALAVSSPGMVLMQRAKLYLEHCISLNTLVP
YRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPALSAAGTPQLASVGEGAVIPWKSEAE
EGAGNATGEDPPAPGELLPLRMPLSRWQRRLRRAARRQVLSGHLPFCRFRLRYPSLSPSA
FWVWKSLARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVE
GGPSREGALQEGATAQGQPHSGPLLSQPVVAAAGGRDGRMLVMDMIATTKFKAQAKLFLQ
KRFQSKSFPSYKEFSALFPLTARSTYYMWKRALYDGLTLVDG

>gi568815584r:74186464_74402912|GENSCAN_predicted_CDS_5|2109_bp
atgacttctcggaaccagctggtgcagaaggtgctgcaggagctgcaggaagcagtggag
tgcgaaggcctggagggtctcataggtgcttccttggaggccaagcaggtcctgtcttcc
ttcactctccccacctgccgggagggaggccctggcctccaggtgctggaagtggactcg
gtggccctgagcctgtatccagaagatgctccacggaacatgctgccgctggtgtgcaag
ggggagggcagcctgctgttcgaggcggccagcatgctgctgtggggtgacgcaggcctc
agcctggagctgcgggcccgcaccgtggtagagatgctgctgcacagacactactacctc
cagggcatgatcgactccaaagtgatgctgcaggccgtgcgctactccctatgctctgag
gagtcccctgagatgaccagcttgccccccgccacgctggaggccatcttcgatgccgac
gtcaaggcctcctgtttccccagcagcttctccaacgtgtggcacttgtatgctctcgcc
tctgtcctccagcggaacatctactccatctaccccatgcgcaacctcaagatccggccc
tacttcaaccgtgtcatccggccccgccgctgcgaccacgtgccctccacgctgcacatc
atgtgggctggccagcccctcaccagccacttcttccgccaccagtactttgcccctgtg
gtggggctggaagaggtggaggctgaaggtgcccctggcgtggccccagctcttccagcc
ctggccccactctcatcgccggccaagaccctggagctgctcaaccgtgaacctggcctc
agctactctcacctctgtgagcgctacagcgtcaccaaaagcaccttctaccgctggcgg
cggcagtcccaggagcaccggcagaaggttgctgcccgcttctccgccaagcacttcctg
caggacagcttccaccgggggggcgtcgtgccacttcagcagttcctccagcggttcccg
gagatctcccgctcaacctactatgcctggaagcatgagctgctgggctctggcacctgc
ccggccttgccccccagggaggtgctgggcatggaggagctagagaagctgccggaggag
caggtggctgaggaggagctggagtgctccgcactggcggtgtcaagccctggaatggtc
ttaatgcagcgggccaagttgtacctggagcattgcatctccctgaacacactggtaccc
tatcgctgcttcaaacgcaggttccctggcatctcacggtccacttattataattggcgg
cgaaaggccctccggaggaaccccagcttcaagccggcaccagccctctctgctgctggg
actccccagctagcatctgttggggaaggggctgtaattccttggaagagtgaggcggaa
gagggggcagggaatgccacaggtgaggaccctcccgcccccggggagctcctgccacta
aggatgcccctgtcccgttggcagaggcgtctgcgcagggctgcccgcaggcaggtgctg
agtgggcatctccctttctgccgcttccgcctccgctaccccagcctgtcaccttctgcc
ttttgggtctggaagagtcttgctcggggttggcccagaggcctgtccaaacttcaggtg
ccggtccccaccttgggcaaaggggggcaggaggctgaggagaagcaggagaaggaggct
ggcagggatgtgacagctgtgatggccccacctgtgggggcttcttcagaagatgtagag
ggagggccttccagagagggggccctgcaggagggggccacagcccagggccagccccac
agtgggcccttgctgagccaacctgtggtggcagcagcgggtggcagggatggccggatg
ctggtgatggacatgatcgctaccacgaagttcaaggcccaggccaagctgttcttgcag
aagcgcttccagtccaagagctttccctcctacaaggagttcagtgccctctttcccctc
actgcccgctccacatactacatgtggaagcgagccctctatgacggcctgaccctggta
gatggctga

>gi568815584r:74186464_74402912|GENSCAN_predicted_peptide_6|74_aa
MANNFNLGVDEDAIEEVLEVVPKEPMNEGLLELEQEHIAEEQTREKETAEEKELPRKFTV
KGLAKAFTDLNQIL

>gi568815584r:74186464_74402912|GENSCAN_predicted_CDS_6|225_bp
atggcaaataactttaaccttggtgtggatgaggatgccattgaggaggtcctagaggtg
gttcctaaggaaccgatgaatgaggggttgttggaactggaacaggaacacatagctgaa
gaacagacaagagaaaaggaaactgcagaagaaaaagaacttccaagaaaattcacagtg
aagggcttagcaaaagcttttacagacctcaaccagatcctttaa

>gi568815584r:74186464_74402912|GENSCAN_predicted_peptide_7|221_aa
MKIKSLKEIYIFSLPIKESEIIDLSLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD
YNGHVGLGIKCSKEVATAICGAIILAKLSIVPISRGCWENKTGKPHTVPCKMTDRCGSVP
VHLIPAPRGTGIVSAPVPKKLLMMAGINDCYTSAQGCTATLGNFAKATFDAISKTYSYLT
PDLWKETVFTKSLYQEFTDHLVKTHTRVSVQWTQAPAVATT

>gi568815584r:74186464_74402912|GENSCAN_predicted_CDS_7|666_bp
atgaagatcaagtccctgaaggagatctatatcttctccctgcccattaaggaatctgag
atcattgacctttccctgggggcctctctcaaggacgaggttttgaagattatgccggtc
cagaagcagacccgtgccggccagcgcaccaggttcaaggcgtttgttgccatcggggac
tacaatggccacgtcggtctgggtattaagtgctccaaggaggtggccactgccatctgc
ggggccatcatcctggccaagctctccattgtccccataagcagaggctgctgggagaac
aagactggcaagccccacaccgtcccttgcaagatgacagaccgctgcggctctgtgccg
gtgcacctcatccctgcacccaggggcactggcattgtctcagcgcctgtgcccaagaag
ctgctcatgatggctggtatcaatgactgctacacctcagcccagggctgcactgccacc
ctgggcaacttcgccaaggccacctttgatgccatctctaaaacctacagctacctgacc
cccgacctctggaaggagactgtattcactaagtctctctatcaggaattcactgaccac
ctcgtcaagacccacactagagtctcggtgcagtggacccaggctccagctgtggctaca
acatag