GENSCAN 1.0	Date run:  7-Nov-116	Time: 01:40:15

Sequence gi568815575f:48583854_48791159 : 207306 bp : 47.38% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6303   6434  132  2  0   64  113    35 0.501   3.74
 1.02 Intr +  14105  14184   80  1  2   94   78    33 0.117   1.25
 1.03 Intr +  14864  15104  241  2  1  107   83   444 0.954  43.35
 1.04 Intr +  15500  15609  110  1  2  115   85   191 0.998  20.58
 1.05 Intr +  15734  15864  131  2  2   53   99   199 0.991  17.84
 1.06 Intr +  16466  16773  308  0  2   48   25   531 0.977  38.97
 1.07 Intr +  17931  18111  181  2  1   99   96   224 0.997  23.74
 1.08 Intr +  18212  18353  142  0  1  104   94   131 0.998  14.71
 1.09 Intr +  20419  20537  119  1  2  112   92   158 0.996  18.71
 1.10 Intr +  20995  21175  181  2  1   76   22   347 0.063  25.83
 1.11 Intr +  29823  29946  124  0  1   52  105    71 0.173   5.79
 1.12 Intr +  47808  47896   89  2  2   -1    9   170 0.013  -1.03
 1.13 Intr +  52479  52714  236  0  2   83   73   121 0.087   7.43
 1.14 Intr +  92437  92776  340  2  1   42   52   234 0.320   9.73
 1.15 Intr +  99967 100132  166  1  1   45   85   135 0.424   8.86
 1.16 Intr + 100430 100570  141  1  0  122   60   224 0.990  23.55
 1.17 Intr + 101694 101780   87  2  0   93   95    77 0.732   9.07
 1.18 Intr + 101881 102022  142  0  1    1  105   112 0.965   4.13
 1.19 Intr + 102093 102134   42  1  0   82  113    56 0.961   5.71
 1.20 Intr + 102928 103102  175  2  1  114   52   198 0.998  17.80
 1.21 Intr + 104201 104243   43  2  1   85   86    12 0.984  -1.06
 1.22 Intr + 104447 104600  154  1  1  120   76   190 0.837  20.65
 1.23 Intr + 104807 105213  407  0  2   72  100   160 0.487   9.67
 1.24 Intr + 105467 105581  115  1  1  100  105    68 0.999   9.72
 1.25 Term + 107254 107309   56  2  2  108   48   106 0.990   6.32
 1.26 PlyA + 107542 107547    6                               1.05

 2.00 Prom + 109576 109615   40                              -6.46
 2.01 Init + 112932 112950   19  2  1  102   67    -3 0.657  -0.83
 2.02 Intr + 115049 115194  146  0  2   62   77   162 0.953  12.50
 2.03 Intr + 116238 116900  663  2  0   75   75  1175 0.895 106.86
 2.04 Intr + 122412 122558  147  2  0   75   15   337 0.994  25.53
 2.05 Intr + 122645 122774  130  1  1  105   81   279 0.996  29.17
 2.06 Term + 123584 123717  134  0  2   85   41   188 0.999  12.05
 2.07 PlyA + 125137 125142    6                               1.05

 3.00 Prom + 142848 142887   40                              -3.36
 3.01 Init + 167960 168053   94  1  1   87   90   106 0.946   9.24
 3.02 Intr + 168854 168988  135  0  0    6   43   187 0.975   6.54
 3.03 Intr + 172761 172866  106  1  1  111   53    47 0.550   2.77
 3.04 Intr + 174423 174486   64  0  1   49  108    74 0.670   4.22
 3.05 Intr + 177884 178000  117  1  0   95   66    22 0.187   1.36
 3.06 Intr + 178123 178191   69  0  0  131   69   -10 0.210   0.78
 3.07 Intr + 181982 182119  138  1  0  105  121   115 0.956  17.16
 3.08 Intr + 187074 187229  156  2  0   39  113    84 0.983   6.21
 3.09 Term + 189457 189582  126  0  0  122   45   152 0.999  12.58
 3.10 PlyA + 189771 189776    6                               1.05

 4.03 PlyA - 191333 191328    6                               1.05
 4.02 Term - 192616 192140  477  1  0  -11   49   343 0.575  15.34
 4.01 Init - 192835 192662  174  1  0   65   76   171 0.432  12.95

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +   6775   6918  144  0  0   28   49   148 0.932   2.81
S.002 Term +  20995  21179  185  2  2   76   46   359 0.934  28.21
S.003 Sngl -  71194  70973  222  1  0   75   48   207 0.991  10.55


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575f:48583854_48791159|GENSCAN_predicted_peptide_1|1313_aa
MKLAPQQQGVLPPGVWSSRPFHFGVARHKGHEPESVDVLAFVVHAAAGGHARGGGRGMAA
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG
QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND
DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI
WASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKL
TGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV
SREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC
VVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRRE
QKSFCTLLCVTPEVVMSQYVCGQECPHSSLCGLRIVGILVPEPPTCSLLLLLLLLLLLLQ
SFGFLFESEMILRPEPTDLTIYHLVFIHIVILLTLVSLLSPGLPESLYFQNDFKCKGFFL
PEQDDEKFLHLHHLLPECASDHNHQPQKLLVARTLSCPFSGQQPHTTQRCENQQPEPQKH
GFPGARALDWHPLRMLQSGDQWEPGAQGRRRARAATEKHRDPTSVIDQSELTAPHTPSPP
ALSQLPARVREGRVKTKSKEERATRASPEKTRAESTMSGGPMGGRPGGRGAPAVQQNIPS
TLLQDHENQRLFEMLGRKCLTLATAVVQLYLALPPGAEHWTKEHCGAVCFVKDNPQKSYF
IRLYGLQAGRLLWEQELYSQLVYSTPTPFFHTFAGDDCQAGLNFADEDEAQAFRALVQEK
IQKRNQRQSGGEEATGEERKLGRDRRQLPPPPTPANEGPPVGPLSLGLATVDIQNPDITS
SRYRGLPAPGPSPADKKRSGKKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRS
LFSRAGISEAQLTDAETSKLIYDFIEDQGGLEAVRQEMRRQEPLPPPPPPSRGGNQLPRP
PIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAG
GPPMPPPPPPPPPPPSSGNGPAPPPLPPALVPAGGLAPGGGRGALLDQIRQGIQLNKTPG
APESSALQPPPQSSEGLVGALMHVMQKRSRAIHSSDEGEDQAGDEDEDDEWDD

>gi568815575f:48583854_48791159|GENSCAN_predicted_CDS_1|3942_bp
atgaaattagctcctcagcaacaaggtgtcctgccacctggtgtgtggtcatctcgcccc
tttcatttcggtgttgcccggcacaagggacatgaaccagaatctgtggatgttcttgct
ttcgtggtccacgctgccgcgggcggacacgccagaggaggaggccggggaatggccgcg
gtgtggcagcaagtcttagcagtggacgcgaggtacaacgcgtaccgcacaccaacgttt
ccacagtttcggacgcagtatatccgccggcgcagccagctgctgcgggagaatgccaag
gctgggcaccccccagcgctgcgtcggcagtacctgaggcttcgggggcagctgctgggc
cagcgctacgggcccctctccgagccaggcagtgctcgtgcctatagcaacagcatcgtc
cgcagtagccgcactactcttgaccgcatggaggactttgaggatgatcctcgggccctg
ggggcccgtgggcaccgtcgttctgtcagcagaggctcctaccagctgcaggcgcagatg
aaccgtgccgtctatgaggacaggccccctggcagcgtggtgcccacgtcagcagcagag
gcaagtcgggccatggccggggacacgtcactgagcgagaactatgcctttgcgggcatg
tatcatgtttttgaccagcacgtggatgaggcagtcccaagggtgcgcttcgccaatgat
gaccgacaccgcctggcctgctgctcactcgacggcagcatctccctgtgccagctggtg
cctgccccacccacagtgcttcgcgtgctacggggccacacccgtggtgtctccgacttc
gcctggtccctctccaatgacatcctcgtgtccacctcactggatgccaccatgcgcatc
tgggcctctgaggatggtcgctgcatccgagagatccctgaccccgatagcgctgaactg
ctctgctgcaccttccagcctgtcaacaacaacctcactgtggtggggaacgccaagcac
aacgtgcatgtcatgaacatctccacaggcaagaaagtgaaggggggctccagcaagctg
acaggccgtgtccttgctctgtcctttgatgcccctggccggctgctctgggcgggtgat
gaccgtggcagtgtcttctctttcctctttgatatggccacagggaagctgaccaaagcc
aagcgtttggtggtgcatgaggggagccctgtgaccagcatctcagcccggtcctgggtc
agccgcgaggcccgggatccctcactgctcatcaatgcttgcctcaacaagttgctgctc
tacagggtggtagacaacgaggggaccctgcagctgaagagaagcttccccatcgagcag
agctcacatcctgtgcgcagcatcttctgtcccctcatgtccttccgccagggggcctgc
gtggtgacgggcagtgaggacatgtgcgtgcacttctttgatgtggagcgggcggccaag
gctgctgtcaacaagctgcagggccacagtgcacctgtgcttgatgtcagcttcaactgc
gacgagagcctactggcctccagtgacgccagcggcatggtcatcgtctggaggcgggag
cagaagagtttctgcaccctgctctgtgtgacaccagaagtagtcatgtcccagtatgta
tgtggccaggagtgtccacattctagtctctgtggcctgaggattgttggcatcctggtc
cctgaacccccaacctgttccctgctgctgctgctgctgctgctgctgctgctgctgcag
tcgtttggtttcctctttgaatctgagatgattctgaggcctgagcccacagacctgacc
atttatcacctggtcttcatccacatagtgatcctccttactctggtgtcattgttgtct
ccaggtctgcctgagtcactgtattttcagaatgacttcaagtgtaaaggatttttttta
cctgaacaagatgatgagaagtttctccatctgcaccacctgcttcctgagtgtgcttca
gaccataatcatcagccccagaagctcttggttgcgcgcaccctgtcctgccccttctcg
ggccaacaaccccacacgacgcagcggtgtgagaaccagcaaccggaaccgcaaaagcac
ggctttcccggagcccgggctctggactggcacccactgcgcatgctccagagcggcgac
caatgggagcccggcgcgcagggacggaggcgggcccgggccgctaccgagaagcacagg
gacccgacttcagtcatcgaccaatcagagctcacagccccccacaccccctcccccccg
gccctgagccaattgccagctcgtgtgcgggagggccgggtcaagactaagtcaaaggag
gagagggcaacgcgagcctcgccagagaagacaagggcagaaagcaccatgagtgggggc
ccaatgggaggaaggcccgggggccgaggagcaccagcggttcagcagaacataccctcc
accctcctccaggaccacgagaaccagcgactctttgagatgcttggacgaaaatgcttg
acgctggccactgcagttgttcagctgtacctggcgctgccccctggagctgagcactgg
accaaggagcattgtggggctgtgtgcttcgtgaaggataacccccagaagtcctacttc
atccgcctttacggccttcaggctggtcggctgctctgggaacaggagctgtactcacag
cttgtctactccacccccacccccttcttccacaccttcgctggagatgactgccaagcg
gggctgaactttgcagacgaggacgaggcccaggccttccgggccctcgtgcaggagaag
atacaaaaaaggaatcagaggcaaagtggaggtgaggaggccacaggggaggaaaggaag
ttgggcagagacagacgccagctacccccaccaccaacaccagccaatgaaggccctcca
gtgggtccgctctccctggggctggcgacagtggacatccagaaccctgacatcacgagt
tcacgataccgtgggctcccagcacctggacctagcccagctgataagaaacgctcaggg
aagaagaagatcagcaaagctgatattggtgcacccagtggattcaagcatgtcagccac
gtggggtgggacccccagaatggatttgacgtgaacaacctcgacccagatctgcggagt
ctgttctccagggcaggaatcagcgaggcccagctcaccgacgccgagacctctaaactt
atctacgacttcattgaggaccagggtgggctggaggctgtgcggcaggagatgaggcgc
caggagccacttccgccgcccccaccgccatctcgaggagggaaccagctcccccggccc
cctattgtggggggtaacaagggtcgttctggtccactgccccctgtacctttggggatt
gccccacccccaccaacaccccggggacccccacccccaggccgagggggccctccacca
ccaccccctccagctactggacgttctggaccactgccccctccaccccctggagctggt
gggccacccatgccaccaccaccgccaccaccgccaccgccgcccagctccgggaatgga
ccagcccctcccccactccctcctgctctggtgcctgccgggggcctggcccctggtggg
ggtcggggagcgcttttggatcaaatccggcagggaattcagctgaacaagacccctggg
gccccagagagctcagcgctgcagccaccacctcagagctcagagggactggtgggggcc
ctgatgcacgtgatgcagaagagaagcagagccatccactcctccgacgaaggggaggac
caggctggcgatgaagatgaagatgatgaatgggatgactga

>gi568815575f:48583854_48791159|GENSCAN_predicted_peptide_2|412_aa
MAENLKGCSVCCKSSWNQLQDLCRLAKLSCPALGISKRNLYDFEVEYLCDYKKIREQEYY
LVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHHRSKTPRHLDPSLANYLVQ
KAKQRRALRRWEQELNAKRSHLGRITVENEVDLDGPPRAFVYINEYRVGEGITLNQVAVG
CECQDCLWAPTGGCCPGASLHKFAYNDQGQVRLRAGLPIYECNSRCRCGYDCPNRVVQKG
IRYDLCIFRTDDGRGWGVRTLEKIRKNSFVMEYVGEIITSEEAERRGQIYDRQGATYLFD
LDYVEDVYTVDAAYYGNISHFVNHSCDPNLQVYNVFIDNLDERLPRIAFFATRTIRAGEE
LTFDYNMQVDPVDMESTRMDSNFGLAGLPGSPKKRVRIECKCGTESCRKYLF

>gi568815575f:48583854_48791159|GENSCAN_predicted_CDS_2|1239_bp
atggcggaaaatttaaaaggctgcagcgtgtgttgcaagtcttcttggaatcagctgcag
gacctgtgccgcctggccaagctctcctgccctgccctcggtatctctaagaggaacctc
tatgactttgaagtcgagtacctgtgcgattacaagaagatccgcgaacaggaatattac
ctggtgaaatggcgtggatatccagactcagagagcacctgggagccacggcagaatctc
aagtgtgtgcgtatcctcaagcagttccacaaggacttagaaagggagctgctccggcgg
caccaccggtcaaagaccccccggcacctggacccaagcttggccaactacctggtgcag
aaggccaagcagaggcgggcgctccgtcgctgggagcaggagctcaatgccaagcgcagc
catctgggacgcatcactgtagagaatgaggtggacctggacggccctccgcgggccttc
gtgtacatcaatgagtaccgtgttggtgagggcatcaccctcaaccaggtggctgtgggc
tgcgagtgccaggactgtctgtgggcacccactggaggctgctgcccgggggcgtcactg
cacaagtttgcctacaatgaccagggccaggtgcggcttcgagccgggctgcccatctac
gagtgcaactcccgctgccgctgcggctatgactgcccaaatcgtgtggtacagaagggt
atccgatatgacctctgcatcttccgcacggatgatgggcgtggctggggcgtccgcacc
ctggagaagattcgcaagaacagcttcgtcatggagtacgtgggagagatcattacctca
gaggaggcagagcggcggggccagatctacgaccgtcagggcgccacctacctctttgac
ctggactacgtggaggacgtgtacaccgtggatgccgcctactatggcaacatctcccac
tttgtcaaccacagttgtgaccccaacctgcaggtgtacaacgtcttcatagacaacctt
gacgagcggctgccccgcatcgctttctttgccacaagaaccatccgggcaggcgaggag
ctcacctttgattacaacatgcaagtggaccccgtggacatggagagcacccgcatggac
tccaactttggcctggctgggctccctggctcccctaagaagcgggtccgtattgaatgc
aagtgtgggactgagtcctgccgcaaatacctcttctag

>gi568815575f:48583854_48791159|GENSCAN_predicted_peptide_3|334_aa
MVWEALAAASLVLWALSWEMCWGQQWMGKKHAILQQLNVRDFWEQLNITVTPCQMGIIPV
LLIRNLTVNAGNGLTPGITVAHDIDDIMLSRHSEQEVATTLDLLVRNFCVRGAPSSNGNG
KYVMGPKQALKTQALSQRIVGRTLGKDAYPAMLRHLPSRLPVKMWGRTLEKQRQAEGSRG
PWKGPALSHGGPCAQSWRDSSQTPPPCLIRRLDHIVMTVKSIKDTTMFYSKILGMEVMTF
KEDRKALCFGDQKFNLHEVGKEFEPKAAHPVPGSLDICLITEVPLEEMIQHLKACDVPIE
EGPVPRTGAKGPIMSIYFRDPDRNLIEVSNYISS

>gi568815575f:48583854_48791159|GENSCAN_predicted_CDS_3|1005_bp
atggtttgggaagccctggctgctgcctctctggttctctgggctttgtcctgggagatg
tgctggggccagcagtggatggggaagaagcacgctattttgcaacagctcaacgtgcgt
gacttttgggagcagctaaacatcactgtgacaccctgtcagatgggtatcatccccgta
ttactgatcaggaatctgacggtcaatgcaggcaacggactcactccaggtatcacagtg
gcccatgacattgatgatattatgctgagtagacatagtgagcaagaagtagcaactact
ctagacttattggtgagaaatttctgtgtcagaggtgctccatcgtcgaatggaaatggg
aaatatgtgatggggcctaagcaggccctgaagacacaagcgctgagccagaggattgtc
gggaggaccctgggcaaagacgcctaccctgccatgctgcgccatctgccctccaggctg
ccagtcaagatgtggggcaggactttggagaaacagagacaagcagagggcagcagaggc
ccatggaaaggcccggctctaagccatggagggccctgtgctcagtcatggagggacagc
agtcagacccctcccccatgtcttatccgtagacttgaccacatcgtgatgacggtgaag
agcatcaaagacaccaccatgttttattccaagatcctgggcatggaggtcatgactttt
aaggaagaccggaaagcactgtgttttggagaccagaaatttaacctccacgaggtggga
aaggaatttgaacccaaagccgctcacccagttcctggctccctggacatatgtctgatc
acagaggtgcctttggaggaaatgatccagcacctcaaggcttgtgatgtccctattgag
gaggggccagtccccagaacaggggcaaaagggcctatcatgtccatctacttccgagac
cccgacagaaatctgattgaggtgtccaactacatctcctcgtga

>gi568815575f:48583854_48791159|GENSCAN_predicted_peptide_4|216_aa
MAMTAENLAVKHKISREECDKYGLQSQQRWKAANDAGYFNDEMAPIEVKTKKGKQTMQKL
PPVFKKDGTVTAGNASGIADGAGAVIIASEDAVKNHNFTPLARIVGYFVSVCDPSIMGIG
PVLAISGALKKAGLSLKDMDLVEVNEAFAPQYLAVEKSLDLDISKTNVNGGAIALGHPLG
GSGLVDELRRRGGKYAVGSACIGGGQGIAVIIQSTA

>gi568815575f:48583854_48791159|GENSCAN_predicted_CDS_4|651_bp
atggcaatgactgcagagaatcttgctgtaaaacataaaataagcagagaagaatgtgac
aaatacggcctgcagtcacagcagagatggaaagctgctaatgatgctggctactttaat
gatgaaatggcaccaattgaagtgaagacaaagaaaggaaaacagacaatgcagaaactt
cctccagtattcaagaaagatggtactgtcactgcagggaatgcatcggggatagctgat
ggtgctggagctgttatcatagctagtgaagatgctgttaagaaccataatttcacacca
ctggcaagaattgtgggctactttgtatctgtatgtgatccctctatcatgggtattggt
cctgtccttgctatcagtggggcactgaagaaagcaggactgagtcttaaggacatggat
ttggtagaggtgaatgaagcttttgctccccagtacttggctgttgagaagagtttggat
cttgacataagtaaaaccaatgtgaatggaggagccattgctttgggtcacccactggga
ggatctggattggttgatgaattaaggcgtcgaggtggaaaatatgccgttggatcagct
tgcattggaggtggccaaggtattgctgtcatcattcagagcacagcctga