Result of FASTA (omim) for pF1KB3507
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3507, 373 aa
  1>>>pF1KB3507 373 - 373 aa - 373 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4151+/-0.000368; mu= 16.5760+/- 0.023
 mean_var=73.9788+/-15.221, 0's: 0 Z-trim(114.1): 5  B-trim: 290 in 1/55
 Lambda= 0.149115
 statistics sampled from 23725 (23729) to 23725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.278), width:  16
 Scan time:  7.800

The best scores are:                                      opt bits E(85289)
NP_001028228 (OMIM: 138290,610015) glutamine synth ( 373) 2630 575.1  9e-164
NP_001028216 (OMIM: 138290,610015) glutamine synth ( 373) 2630 575.1  9e-164
XP_006711341 (OMIM: 138290,610015) PREDICTED: glut ( 373) 2630 575.1  9e-164
NP_002056 (OMIM: 138290,610015) glutamine syntheta ( 373) 2630 575.1  9e-164


>>NP_001028228 (OMIM: 138290,610015) glutamine synthetas  (373 aa)
 initn: 2630 init1: 2630 opt: 2630  Z-score: 3061.2  bits: 575.1 E(85289): 9e-164
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
              310       320       330       340       350       360

              370   
pF1KB3 LNETGDEPFQYKN
       :::::::::::::
NP_001 LNETGDEPFQYKN
              370   

>>NP_001028216 (OMIM: 138290,610015) glutamine synthetas  (373 aa)
 initn: 2630 init1: 2630 opt: 2630  Z-score: 3061.2  bits: 575.1 E(85289): 9e-164
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
              310       320       330       340       350       360

              370   
pF1KB3 LNETGDEPFQYKN
       :::::::::::::
NP_001 LNETGDEPFQYKN
              370   

>>XP_006711341 (OMIM: 138290,610015) PREDICTED: glutamin  (373 aa)
 initn: 2630 init1: 2630 opt: 2630  Z-score: 3061.2  bits: 575.1 E(85289): 9e-164
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
              310       320       330       340       350       360

              370   
pF1KB3 LNETGDEPFQYKN
       :::::::::::::
XP_006 LNETGDEPFQYKN
              370   

>>NP_002056 (OMIM: 138290,610015) glutamine synthetase [  (373 aa)
 initn: 2630 init1: 2630 opt: 2630  Z-score: 3061.2  bits: 575.1 E(85289): 9e-164
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
              310       320       330       340       350       360

              370   
pF1KB3 LNETGDEPFQYKN
       :::::::::::::
NP_002 LNETGDEPFQYKN
              370   




373 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:10:22 2016 done: Sat Nov  5 12:10:23 2016
 Total Scan time:  7.800 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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