Result of FASTA (omim) for
pF1KB6844
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6844, 192 aa
1>>>pF1KB6844 192 - 192 aa - 192 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3298+/-0.000319; mu= 18.7542+/- 0.020
mean_var=69.2156+/-14.043, 0's: 0 Z-trim(118.4): 404 B-trim: 1457 in 2/52
Lambda= 0.154160
statistics sampled from 30925 (31413) to 30925 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.368), width: 16
Scan time: 6.050
The best scores are: opt bits E(85289)
NP_005043 (OMIM: 602050) ras-related C3 botulinum ( 192) 1314 300.5 1.1e-81
NP_008839 (OMIM: 602048) ras-related C3 botulinum ( 192) 1232 282.2 3.5e-76
NP_002863 (OMIM: 602049,608203) ras-related C3 bot ( 192) 1185 271.8 4.9e-73
NP_001303236 (OMIM: 602050) ras-related C3 botulin ( 170) 1029 237.0 1.3e-62
XP_006724349 (OMIM: 602049,608203) PREDICTED: ras- ( 161) 968 223.4 1.5e-58
NP_426359 (OMIM: 116952,616737) cell division cont ( 191) 946 218.6 4.9e-57
NP_001782 (OMIM: 116952,616737) cell division cont ( 191) 929 214.8 6.7e-56
NP_001034891 (OMIM: 116952,616737) cell division c ( 191) 929 214.8 6.7e-56
XP_016873208 (OMIM: 179505) PREDICTED: rho-related ( 191) 922 213.3 2e-55
XP_005252973 (OMIM: 179505) PREDICTED: rho-related ( 191) 922 213.3 2e-55
NP_001656 (OMIM: 179505) rho-related GTP-binding p ( 191) 922 213.3 2e-55
NP_036381 (OMIM: 605857) rho-related GTP-binding p ( 205) 829 192.6 3.5e-49
NP_065714 (OMIM: 607653) rho-related GTP-binding p ( 214) 786 183.1 2.7e-46
NP_061485 (OMIM: 602048) ras-related C3 botulinum ( 211) 729 170.4 1.8e-42
NP_001300870 (OMIM: 165390) transforming protein R ( 193) 704 164.8 7.8e-41
NP_001655 (OMIM: 165390) transforming protein RhoA ( 193) 704 164.8 7.8e-41
NP_067028 (OMIM: 606366) rho-related GTP-binding p ( 258) 703 164.7 1.1e-40
NP_786886 (OMIM: 165380) rho-related GTP-binding p ( 193) 695 162.8 3.1e-40
NP_001036144 (OMIM: 165380) rho-related GTP-bindin ( 193) 695 162.8 3.1e-40
NP_001036143 (OMIM: 165380) rho-related GTP-bindin ( 193) 695 162.8 3.1e-40
NP_004031 (OMIM: 165370) rho-related GTP-binding p ( 196) 687 161.0 1.1e-39
XP_016859205 (OMIM: 605857) PREDICTED: rho-related ( 172) 675 158.3 6.3e-39
XP_011531028 (OMIM: 605857) PREDICTED: rho-related ( 192) 674 158.1 8e-39
NP_055393 (OMIM: 605781) rho-related GTP-binding p ( 210) 664 155.9 4e-38
XP_006720277 (OMIM: 607653) PREDICTED: rho-related ( 176) 641 150.7 1.2e-36
NP_001300872 (OMIM: 165390) transforming protein R ( 187) 590 139.4 3.3e-33
XP_011531030 (OMIM: 605857) PREDICTED: rho-related ( 157) 556 131.8 5.5e-31
NP_005159 (OMIM: 602924) rho-related GTP-binding p ( 244) 555 131.8 8.7e-31
NP_001241667 (OMIM: 602924) rho-related GTP-bindin ( 244) 555 131.8 8.7e-31
NP_005431 (OMIM: 601555) rho-related GTP-binding p ( 227) 553 131.3 1.1e-30
XP_011523618 (OMIM: 601555) PREDICTED: rho-related ( 234) 553 131.3 1.1e-30
NP_001265296 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_001265288 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_001265297 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
XP_011511994 (OMIM: 602037) PREDICTED: rho-related ( 191) 517 123.2 2.6e-28
NP_001265294 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_001265298 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_001265295 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_001265292 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_001265289 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_001265291 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_001265293 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
XP_016863677 (OMIM: 602037) PREDICTED: rho-related ( 191) 517 123.2 2.6e-28
NP_001265290 (OMIM: 602037) rho-related GTP-bindin ( 191) 517 123.2 2.6e-28
NP_004301 (OMIM: 602037) rho-related GTP-binding p ( 191) 517 123.2 2.6e-28
XP_016863678 (OMIM: 602037) PREDICTED: rho-related ( 191) 517 123.2 2.6e-28
NP_055285 (OMIM: 609038) rho-related GTP-binding p ( 232) 492 117.7 1.4e-26
XP_011523619 (OMIM: 601555) PREDICTED: rho-related ( 206) 464 111.4 9.6e-25
NP_001300873 (OMIM: 165390) transforming protein R ( 173) 440 106.0 3.4e-23
XP_011538730 (OMIM: 607351) PREDICTED: rho-related ( 530) 365 89.9 7.6e-18
>>NP_005043 (OMIM: 602050) ras-related C3 botulinum toxi (192 aa)
initn: 1314 init1: 1314 opt: 1314 Z-score: 1587.3 bits: 300.5 E(85289): 1.1e-81
Smith-Waterman score: 1314; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB6 PVKKPGKKCTVF
::::::::::::
NP_005 PVKKPGKKCTVF
190
>>NP_008839 (OMIM: 602048) ras-related C3 botulinum toxi (192 aa)
initn: 1268 init1: 1232 opt: 1232 Z-score: 1488.7 bits: 282.2 E(85289): 3.5e-76
Smith-Waterman score: 1232; 92.7% identity (98.4% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
::::::::::::::::::::::::::::::::::::::::::::::.:::.:::::::::
NP_008 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
:::::::.:..:::.:::::::::::.:::.:::::::::::::::::::::::::::::
NP_008 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB6 PVKKPGKKCTVF
:::: .:: ..
NP_008 PVKKRKRKCLLL
190
>>NP_002863 (OMIM: 602049,608203) ras-related C3 botulin (192 aa)
initn: 1220 init1: 1185 opt: 1185 Z-score: 1432.2 bits: 271.8 E(85289): 4.9e-73
Smith-Waterman score: 1185; 88.5% identity (96.9% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
NP_002 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
:::::::::::::::::::::::::::::.:::::::.:::::::: :::.:::::::::
NP_002 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
:::::::.:..:::::::::::::.:.:: :::::::::::::::::::::::::::::
NP_002 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
130 140 150 160 170 180
190
pF1KB6 PVKKPGKKCTVF
:... . :...
NP_002 PTRQQKRACSLL
190
>>NP_001303236 (OMIM: 602050) ras-related C3 botulinum t (170 aa)
initn: 1061 init1: 1029 opt: 1029 Z-score: 1245.4 bits: 237.0 E(85289): 1.3e-62
Smith-Waterman score: 1029; 98.7% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
::::::::::::::::::::::::::::::..
NP_001 DDKDTIERLRDKKLAPITYPQGLAMAREIGGLCEIPGVLSPDPAGPEDSV
130 140 150 160 170
190
pF1KB6 PVKKPGKKCTVF
>>XP_006724349 (OMIM: 602049,608203) PREDICTED: ras-rela (161 aa)
initn: 968 init1: 968 opt: 968 Z-score: 1172.3 bits: 223.4 E(85289): 1.5e-58
Smith-Waterman score: 968; 93.3% identity (99.3% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
XP_006 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
:::::::::::::::::::::::::::::.:::::::.:::::::: :::.:::::::::
XP_006 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
:::::::.:..:::::::::::::.:.::
XP_006 DDKDTIEKLKEKKLAPITYPQGLALAKEIEKHQNSRPPSTD
130 140 150 160
>>NP_426359 (OMIM: 116952,616737) cell division control (191 aa)
initn: 994 init1: 917 opt: 946 Z-score: 1145.0 bits: 218.6 E(85289): 4.9e-57
Smith-Waterman score: 946; 70.3% identity (88.0% similar) in 192 aa overlap (1-192:1-191)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
::.::::::::::::::::::::::: ::.::.:::::::...::. :.: .:::.::::
NP_426 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
:::::::::::::::::::.:::.:::.:::::. :: ::. ::::.::.:::::..:::
NP_426 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
:: .:::.: .: ::: . .::.. .:::.:::::::::::.:::::: :.: ::
NP_426 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB6 PVKKPGKKCTVF
.. : .:: .:
NP_426 ETQ-PKRKCCIF
190
>>NP_001782 (OMIM: 116952,616737) cell division control (191 aa)
initn: 948 init1: 920 opt: 929 Z-score: 1124.6 bits: 214.8 E(85289): 6.7e-56
Smith-Waterman score: 929; 69.3% identity (88.5% similar) in 192 aa overlap (1-192:1-191)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
::.::::::::::::::::::::::: ::.::.:::::::...::. :.: .:::.::::
NP_001 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
:::::::::::::::::::.:::.:::.:::::. :: ::. ::::.::.:::::..:::
NP_001 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
:: .:::.: .: ::: . .::.. .:::.:::::::.:::.:::::: :.: ::
NP_001 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB6 PVKKPGKKCTVF
:: ...:...
NP_001 EPKK-SRRCVLL
190
>>NP_001034891 (OMIM: 116952,616737) cell division contr (191 aa)
initn: 948 init1: 920 opt: 929 Z-score: 1124.6 bits: 214.8 E(85289): 6.7e-56
Smith-Waterman score: 929; 69.3% identity (88.5% similar) in 192 aa overlap (1-192:1-191)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
::.::::::::::::::::::::::: ::.::.:::::::...::. :.: .:::.::::
NP_001 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
:::::::::::::::::::.:::.:::.:::::. :: ::. ::::.::.:::::..:::
NP_001 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
:: .:::.: .: ::: . .::.. .:::.:::::::.:::.:::::: :.: ::
NP_001 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB6 PVKKPGKKCTVF
:: ...:...
NP_001 EPKK-SRRCVLL
190
>>XP_016873208 (OMIM: 179505) PREDICTED: rho-related GTP (191 aa)
initn: 947 init1: 909 opt: 922 Z-score: 1116.1 bits: 213.3 E(85289): 2e-55
Smith-Waterman score: 922; 69.8% identity (85.9% similar) in 192 aa overlap (1-192:1-191)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. :::. :::.::::::
XP_016 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
::.::::: ::::::.::.::::..:: :.:::: ::.::: :::: .:::::::: :::
XP_016 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
. ::..::... :::: :: :.:..: .:.::::::: : :.: :: ::.:::: :
XP_016 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
130 140 150 160 170 180
190
pF1KB6 PVKKPGKKCTVF
:.:. :..: ..
XP_016 PIKR-GRSCILL
190
>>XP_005252973 (OMIM: 179505) PREDICTED: rho-related GTP (191 aa)
initn: 947 init1: 909 opt: 922 Z-score: 1116.1 bits: 213.3 E(85289): 2e-55
Smith-Waterman score: 922; 69.8% identity (85.9% similar) in 192 aa overlap (1-192:1-191)
10 20 30 40 50 60
pF1KB6 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. :::. :::.::::::
XP_005 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
::.::::: ::::::.::.::::..:: :.:::: ::.::: :::: .:::::::: :::
XP_005 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
. ::..::... :::: :: :.:..: .:.::::::: : :.: :: ::.:::: :
XP_005 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
130 140 150 160 170 180
190
pF1KB6 PVKKPGKKCTVF
:.:. :..: ..
XP_005 PIKR-GRSCILL
190
192 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:50:37 2016 done: Fri Nov 4 14:50:39 2016
Total Scan time: 6.050 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]