Result of FASTA (omim) for pF1KB7986
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7986, 325 aa
  1>>>pF1KB7986 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2354+/-0.000334; mu= 6.8229+/- 0.021
 mean_var=114.7369+/-23.705, 0's: 0 Z-trim(118.5): 47  B-trim: 1047 in 1/53
 Lambda= 0.119735
 statistics sampled from 31551 (31601) to 31551 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.371), width:  16
 Scan time:  8.640

The best scores are:                                      opt bits E(85289)
NP_002189 (OMIM: 147575,211980,613659) interferon  ( 325) 2245 398.4 1.1e-110
XP_011541681 (OMIM: 147575,211980,613659) PREDICTE ( 241) 1620 290.3 2.7e-78
XP_011541680 (OMIM: 147575,211980,613659) PREDICTE ( 284) 1270 229.9 4.9e-60
NP_002190 (OMIM: 147576) interferon regulatory fac ( 349)  722 135.3 1.8e-31
NP_002154 (OMIM: 601565,614893,614894) interferon  ( 426)  395 78.8 2.2e-14
XP_006715153 (OMIM: 601900,611724) PREDICTED: inte ( 415)  382 76.6   1e-13
NP_001182215 (OMIM: 601900,611724) interferon regu ( 450)  382 76.6 1.1e-13
NP_002451 (OMIM: 601900,611724) interferon regulat ( 451)  382 76.6 1.1e-13
XP_006716037 (OMIM: 607218,612245,612251) PREDICTE ( 514)  382 76.6 1.2e-13
NP_001092099 (OMIM: 607218,612245,612251) interfer ( 514)  382 76.6 1.2e-13
XP_011514461 (OMIM: 607218,612245,612251) PREDICTE ( 514)  382 76.6 1.2e-13
XP_011514460 (OMIM: 607218,612245,612251) PREDICTE ( 514)  382 76.6 1.2e-13
XP_011514462 (OMIM: 607218,612245,612251) PREDICTE ( 514)  382 76.6 1.2e-13
XP_005250374 (OMIM: 607218,612245,612251) PREDICTE ( 514)  382 76.6 1.2e-13
NP_001229381 (OMIM: 607218,612245,612251) interfer ( 412)  377 75.7 1.8e-13
XP_011514465 (OMIM: 607218,612245,612251) PREDICTE ( 488)  377 75.7 2.1e-13
XP_011514464 (OMIM: 607218,612245,612251) PREDICTE ( 488)  377 75.7 2.1e-13
XP_011514466 (OMIM: 607218,612245,612251) PREDICTE ( 488)  377 75.7 2.1e-13
NP_116032 (OMIM: 607218,612245,612251) interferon  ( 498)  377 75.8 2.2e-13
NP_001092100 (OMIM: 607218,612245,612251) interfer ( 498)  377 75.8 2.2e-13
NP_001092097 (OMIM: 607218,612245,612251) interfer ( 498)  377 75.8 2.2e-13
XP_011514463 (OMIM: 607218,612245,612251) PREDICTE ( 504)  377 75.8 2.2e-13
NP_006138 (OMIM: 119300,119500,607199,608864) inte ( 467)  360 72.8 1.6e-12
NP_006075 (OMIM: 147574) interferon regulatory fac ( 393)  350 71.0 4.5e-12
NP_001184053 (OMIM: 603734,616532) interferon regu ( 300)  263 56.0 1.2e-07
NP_001562 (OMIM: 603734,616532) interferon regulat ( 427)  263 56.0 1.6e-07
XP_016882256 (OMIM: 603734,616532) PREDICTED: inte ( 427)  263 56.0 1.6e-07
XP_016882255 (OMIM: 603734,616532) PREDICTED: inte ( 427)  263 56.0 1.6e-07
XP_006723260 (OMIM: 603734,616532) PREDICTED: inte ( 452)  263 56.0 1.7e-07
XP_006723261 (OMIM: 603734,616532) PREDICTED: inte ( 452)  263 56.0 1.7e-07
NP_001184051 (OMIM: 603734,616532) interferon regu ( 452)  263 56.0 1.7e-07
NP_004020 (OMIM: 605047,616345) interferon regulat ( 474)  214 47.6 6.2e-05
XP_005252966 (OMIM: 605047,616345) PREDICTED: inte ( 487)  214 47.6 6.4e-05
XP_011518368 (OMIM: 605047,616345) PREDICTED: inte ( 502)  214 47.6 6.5e-05
NP_001563 (OMIM: 605047,616345) interferon regulat ( 503)  214 47.6 6.5e-05
XP_005252964 (OMIM: 605047,616345) PREDICTED: inte ( 515)  214 47.6 6.7e-05
XP_005252963 (OMIM: 605047,616345) PREDICTED: inte ( 516)  214 47.6 6.7e-05
NP_004022 (OMIM: 605047,616345) interferon regulat ( 516)  214 47.6 6.7e-05


>>NP_002189 (OMIM: 147575,211980,613659) interferon regu  (325 aa)
 initn: 2245 init1: 2245 opt: 2245  Z-score: 2108.2  bits: 398.4 E(85289): 1.1e-110
Smith-Waterman score: 2245; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
              250       260       270       280       290       300

              310       320     
pF1KB7 MDATWLDSLLTPVRLPSIQAIPCAP
       :::::::::::::::::::::::::
NP_002 MDATWLDSLLTPVRLPSIQAIPCAP
              310       320     

>>XP_011541681 (OMIM: 147575,211980,613659) PREDICTED: i  (241 aa)
 initn: 1620 init1: 1620 opt: 1620  Z-score: 1526.7  bits: 290.3 E(85289): 2.7e-78
Smith-Waterman score: 1620; 100.0% identity (100.0% similar) in 241 aa overlap (85-325:1-241)

           60        70        80        90       100       110    
pF1KB7 FRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPP
                                     ::::::::::::::::::::::::::::::
XP_011                               MNSLPDIEEVKDQSRNKGSSAVRVYRMLPP
                                             10        20        30

          120       130       140       150       160       170    
pF1KB7 LTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLE
               40        50        60        70        80        90

          180       190       200       210       220       230    
pF1KB7 VEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLP
              100       110       120       130       140       150

          240       250       260       270       280       290    
pF1KB7 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV
              160       170       180       190       200       210

          300       310       320     
pF1KB7 FTDLKNMDATWLDSLLTPVRLPSIQAIPCAP
       :::::::::::::::::::::::::::::::
XP_011 FTDLKNMDATWLDSLLTPVRLPSIQAIPCAP
              220       230       240 

>>XP_011541680 (OMIM: 147575,211980,613659) PREDICTED: i  (284 aa)
 initn: 1301 init1: 1270 opt: 1270  Z-score: 1198.9  bits: 229.9 E(85289): 4.9e-60
Smith-Waterman score: 1872; 87.4% identity (87.4% similar) in 325 aa overlap (1-325:1-284)

               10        20        30        40        50        60
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL
       ::                                         :::::::::::::::::
XP_011 PA-----------------------------------------TTDEDEEGKLPEDIMKL
                                                       190         

              250       260       270       280       290       300
pF1KB7 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
     200       210       220       230       240       250         

              310       320     
pF1KB7 MDATWLDSLLTPVRLPSIQAIPCAP
       :::::::::::::::::::::::::
XP_011 MDATWLDSLLTPVRLPSIQAIPCAP
     260       270       280    

>>NP_002190 (OMIM: 147576) interferon regulatory factor   (349 aa)
 initn: 718 init1: 675 opt: 722  Z-score: 685.9  bits: 135.3 E(85289): 1.8e-31
Smith-Waterman score: 760; 46.7% identity (67.6% similar) in 272 aa overlap (1-259:1-265)

               10        20        30        40        50        60
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
       ::. ::::::::: ::::: :::: :.:::. :::::: :::.::::..::: :::.:::
NP_002 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
       :::... :  .:::::::::::::::::::::::::.: .::..: :::::::   . ..
NP_002 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK
               70        80        90       100       110       120

              130       140       150       160             170    
pF1KB7 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYT------VPGYMQDLE
       : .: :. .. : :  ..   .::   .:.:.:.  :  ...  :      : . .. . 
NP_002 KGKKPKTEKEDKVKHIKQEPVESSLG-LSNGVSD--LSPEYAVLTSTIKNEVDSTVNIIV
              130       140        150         160       170       

           180       190       200             210       220       
pF1KB7 VEQA-LTPALSPCAVSSTLPDWHIPVEVV------PDSTSDLYNFQVSPMPSTSEATTDE
       : :. :   .    . .. ::    :::.      : : :.:: .:.::. : .:. : .
NP_002 VGQSHLDSNIENQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTD
       180       190       200       210       220       230       

       230       240       250       260       270       280       
pF1KB7 DEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDI
       .    .: :  .   . .:.  :..:: :: :                            
NP_002 S----VPSDEESAEGRPHWRKRNIEGKQYLSNMGTRGSYLLPGMASFVTSNKPDLQVTIK
           240       250       260       270       280       290   

       290       300       310       320                       
pF1KB7 GLSLQRVFTDLKNMDATWLDSLLTPVRLPSIQAIPCAP                  
                                                               
NP_002 EESNPVPYNSSWPPFQDLPLSSSMTPASSSSRPDRETRASVIKKTSDITQARVKSC
           300       310       320       330       340         

>>NP_002154 (OMIM: 601565,614893,614894) interferon regu  (426 aa)
 initn: 455 init1: 235 opt: 395  Z-score: 379.2  bits: 78.8 E(85289): 2.2e-14
Smith-Waterman score: 408; 31.2% identity (57.5% similar) in 266 aa overlap (7-270:9-243)

                 10        20        30        40        50        
pF1KB7   MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSW
               :.: ::  ::.:.. ::::: :.:. .:.::::::.:. .. . :: .:..:
NP_002 MCDRNGGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAW
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB7 AIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKN
       :.  :..: :.:  .: :::. .:::.:. ::.::: :.:.   :   .:::..:   ..
NP_002 AVFKGKFKEGDKA-EPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---EE
               70         80        90       100       110         

      120       130       140       150       160       170        
pF1KB7 QRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQA
       ..: . . ..    ... .  :: :  : .   ..  .. :         ::    ....
NP_002 EQKCKLGVATAGCVNEVTEMECGRSEIDEL---IKEPSVDD---------YMG--MIKRS
        120       130       140          150                  160  

      180       190         200       210       220       230      
pF1KB7 LTPALSPCAVSSTLPDW--HIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPED
        .:    :  :. ::::  . :   ::  :.  :.   .   . :. . .    :::   
NP_002 PSPP-EACR-SQLLPDWWAQQPSTGVPLVTG--YTTYDAHHSAFSQMVISFYYGGKLV--
             170        180       190         200       210        

        240       250       260       270       280       290      
pF1KB7 IMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFT
              ..   :  .:    :..::.  :..::                          
NP_002 -------GQATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQVTRK
               220       230       240       250       260         

        300       310       320                                    
pF1KB7 DLKNMDATWLDSLLTPVRLPSIQAIPCAP                               
                                                                   
NP_002 LFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTSQFFR
     270       280       290       300       310       320         

>>XP_006715153 (OMIM: 601900,611724) PREDICTED: interfer  (415 aa)
 initn: 406 init1: 382 opt: 382  Z-score: 367.3  bits: 76.6 E(85289): 1e-13
Smith-Waterman score: 382; 43.1% identity (75.9% similar) in 116 aa overlap (7-122:23-138)

                               10        20        30        40    
pF1KB7                 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
                             ..: ::  ::.:.. :::.: :.:. ::.::::::.:.
XP_006 MNLEGGGRGGEFGMSAVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQ
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB7 GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSS
        .. ..:: ::..::.  :... :  .::: :::. .:::.:.  :.::. ..:.   :.
XP_006 DYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISD
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB7 AVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSY
         .:::..:  .:.  :.                                          
XP_006 PYKVYRIVPEGAKKGAKQLTLEDPQMSMSHPYTMTTPYPSLPAQQVHNYMMPPLDRSWRD
              130       140       150       160       170       180

>>NP_001182215 (OMIM: 601900,611724) interferon regulato  (450 aa)
 initn: 382 init1: 382 opt: 382  Z-score: 366.7  bits: 76.6 E(85289): 1.1e-13
Smith-Waterman score: 382; 43.1% identity (75.9% similar) in 116 aa overlap (7-122:23-138)

                               10        20        30        40    
pF1KB7                 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
                             ..: ::  ::.:.. :::.: :.:. ::.::::::.:.
NP_001 MNLEGGGRGGEFGMSAVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQ
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB7 GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSS
        .. ..:: ::..::.  :... :  .::: :::. .:::.:.  :.::. ..:.   :.
NP_001 DYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISD
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB7 AVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSY
         .:::..:  .:.  :.                                          
NP_001 PYKVYRIVPEGAKKGAKQLTLEDPQMSMSHPYTMTTPYPSLPAQVHNYMMPPLDRSWRDY
              130       140       150       160       170       180

>>NP_002451 (OMIM: 601900,611724) interferon regulatory   (451 aa)
 initn: 406 init1: 382 opt: 382  Z-score: 366.7  bits: 76.6 E(85289): 1.1e-13
Smith-Waterman score: 382; 43.1% identity (75.9% similar) in 116 aa overlap (7-122:23-138)

                               10        20        30        40    
pF1KB7                 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
                             ..: ::  ::.:.. :::.: :.:. ::.::::::.:.
NP_002 MNLEGGGRGGEFGMSAVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQ
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB7 GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSS
        .. ..:: ::..::.  :... :  .::: :::. .:::.:.  :.::. ..:.   :.
NP_002 DYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISD
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB7 AVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSY
         .:::..:  .:.  :.                                          
NP_002 PYKVYRIVPEGAKKGAKQLTLEDPQMSMSHPYTMTTPYPSLPAQQVHNYMMPPLDRSWRD
              130       140       150       160       170       180

>>XP_006716037 (OMIM: 607218,612245,612251) PREDICTED: i  (514 aa)
 initn: 376 init1: 324 opt: 382  Z-score: 365.8  bits: 76.6 E(85289): 1.2e-13
Smith-Waterman score: 385; 28.7% identity (52.5% similar) in 341 aa overlap (2-322:11-322)

                        10        20        30        40        50 
pF1KB7          MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKD
                 :  :.:..:::  :.:: : ::: :.: :. .: :::.::..:: . . :
XP_006 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KB7 ACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM
         .:..:: .::.:  :  : ::  ::::.:::.:.  :.. . :  :.   .  ..:..
XP_006 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
               70        80        90       100       110       120

             120       130       140       150       160           
pF1KB7 LPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSS--YTVPGY
            .:      :.  .: .  : ..   .   . ..  : : .: :  .:  . .:  
XP_006 ----CSNGPAPTDSQPPEDYSFGAGEE---EEEEEELQRMLPSLSLTDAVQSGPHMTPYS
                  130       140          150       160       170   

     170         180        190       200       210       220      
pF1KB7 M--QDLEVEQALTP-ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTS----E
       .  .:..   .: : .: : ...   :  . :: . : . .      ..: :..     :
XP_006 LLKEDVKWPPTLQPPTLRPPTLQP--PTLQPPVVLGPPAPDP---SPLAPPPGNPAGFRE
           180       190         200       210          220        

            230       240       250       260        270           
pF1KB7 ATTDEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQP-TSVYGDFSCKEEPE--
         ..  : : :: ..    ::    :        ::  : . : :..   :. . .:   
XP_006 LLSEVLEPGPLPASLPPAGEQ--LLPD-------LLISPHMLPLTDLEIKFQYRGRPPRA
      230       240         250              260       270         

       280       290       300        310            320           
pF1KB7 --IDSPGGDIGLSLQRVFTDLKNMDATWLD-SLLTP-----VRLPSIQAIPCAP      
         :..: :       :.:   ....::  .  :. :     ::.:: . ::         
XP_006 LTISNPHG------CRLF--YSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTN
     280             290         300       310       320       330 

XP_006 QLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHF
             340       350       360       370       380       390 

>>NP_001092099 (OMIM: 607218,612245,612251) interferon r  (514 aa)
 initn: 376 init1: 324 opt: 382  Z-score: 365.8  bits: 76.6 E(85289): 1.2e-13
Smith-Waterman score: 385; 28.7% identity (52.5% similar) in 341 aa overlap (2-322:11-322)

                        10        20        30        40        50 
pF1KB7          MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKD
                 :  :.:..:::  :.:: : ::: :.: :. .: :::.::..:: . . :
NP_001 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KB7 ACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM
         .:..:: .::.:  :  : ::  ::::.:::.:.  :.. . :  :.   .  ..:..
NP_001 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
               70        80        90       100       110       120

             120       130       140       150       160           
pF1KB7 LPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSS--YTVPGY
            .:      :.  .: .  : ..   .   . ..  : : .: :  .:  . .:  
NP_001 ----CSNGPAPTDSQPPEDYSFGAGEE---EEEEEELQRMLPSLSLTDAVQSGPHMTPYS
                  130       140          150       160       170   

     170         180        190       200       210       220      
pF1KB7 M--QDLEVEQALTP-ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTS----E
       .  .:..   .: : .: : ...   :  . :: . : . .      ..: :..     :
NP_001 LLKEDVKWPPTLQPPTLRPPTLQP--PTLQPPVVLGPPAPDP---SPLAPPPGNPAGFRE
           180       190         200       210          220        

            230       240       250       260        270           
pF1KB7 ATTDEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQP-TSVYGDFSCKEEPE--
         ..  : : :: ..    ::    :        ::  : . : :..   :. . .:   
NP_001 LLSEVLEPGPLPASLPPAGEQ--LLPD-------LLISPHMLPLTDLEIKFQYRGRPPRA
      230       240         250              260       270         

       280       290       300        310            320           
pF1KB7 --IDSPGGDIGLSLQRVFTDLKNMDATWLD-SLLTP-----VRLPSIQAIPCAP      
         :..: :       :.:   ....::  .  :. :     ::.:: . ::         
NP_001 LTISNPHG------CRLF--YSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTN
     280             290         300       310       320       330 

NP_001 QLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHF
             340       350       360       370       380       390 




325 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:51:22 2016 done: Sat Nov  5 14:51:24 2016
 Total Scan time:  8.640 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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