FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4539, 622 aa
  1>>>pF1KE4539 622 - 622 aa - 622 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2106+/-0.000777; mu= 15.3462+/- 0.047
 mean_var=89.3846+/-17.923, 0's: 0 Z-trim(110.5): 12  B-trim: 0 in 0/51
 Lambda= 0.135657
 statistics sampled from 11660 (11668) to 11660 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.358), width:  16
 Scan time:  3.430

The best scores are:                                      opt bits E(32554)
CCDS45370.1 MSLN gene_id:10232|Hs108|chr16         ( 622) 4145 821.3       0
CCDS32356.1 MSLN gene_id:10232|Hs108|chr16         ( 630) 4119 816.2       0


>>CCDS45370.1 MSLN gene_id:10232|Hs108|chr16              (622 aa)
 initn: 4145 init1: 4145 opt: 4145  Z-score: 4383.7  bits: 821.3 E(32554):    0
Smith-Waterman score: 4145; 99.8% identity (99.8% similar) in 622 aa overlap (1-622:1-622)

               10        20        30        40        50        60
pF1KE4 MALPTARPLLGSCGTPALGSLLFLLFSLGWVQPSRTLAGETGQEAAPLDGVLANPPNISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MALPTARPLLGSCGTPALGSLLFLLFSLGWVQPSRTLAGETGQEAAPLDGVLANPPNISS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LSPRQLLGFPCAEVSGLSTERVRELAVALAQKNVKLSTEQLRCLAHRLSEPPEDLDALPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LSPRQLLGFPCAEVSGLSTERVRELAVALAQKNVKLSTEQLRCLAHRLSEPPEDLDALPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 DLLLFLNPDAFSGPQACTRFFSRITKANVDLLPRGAPERQRLLPAALACWGVRGSLLSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DLLLFLNPDAFSGPQACTRFFSRITKANVDLLPRGAPERQRLLPAALACWGVRGSLLSEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DVRALGGLACDLPGRFVAESAEVLLPRLVSCPGPLDQDQQEAARAALQGGGPPYGPPSTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DVRALGGLACDLPGRFVAESAEVLLPRLVSCPGPLDQDQQEAARAALQGGGPPYGPPSTW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SVSTMDALRGLLPVLGQPIIRSIPQGIVAAWRQRSSRDPSWRQPERTILRPRFRREVEKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVSTMDALRGLLPVLGQPIIRSIPQGIVAAWRQRSSRDPSWRQPERTILRPRFRREVEKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 ACPSGKKAPEIDESLIFYKKWELEACVDAALLATQMDRVNAIPFTYEQLDVLKHKLDELY
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ACPSGKKAREIDESLIFYKKWELEACVDAALLATQMDRVNAIPFTYEQLDVLKHKLDELY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 PQGYPESVIQHLGYLFLKMSPEDIRKWNVTSLETLKALLEVNKGHEMSPQVATLIDRFVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PQGYPESVIQHLGYLFLKMSPEDIRKWNVTSLETLKALLEVNKGHEMSPQVATLIDRFVK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 GRGQLDKDTLDTLTAFYPGYLCSLSPEELSSVPPSSIWAVRPQDLDTCDPRQLDVLYPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GRGQLDKDTLDTLTAFYPGYLCSLSPEELSSVPPSSIWAVRPQDLDTCDPRQLDVLYPKA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 RLAFQNMNGSEYFVKIQSFLGGAPTEDLKALSQQNVSMDLATFMKLRTDAVLPLTVAEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RLAFQNMNGSEYFVKIQSFLGGAPTEDLKALSQQNVSMDLATFMKLRTDAVLPLTVAEVQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 KLLGPHVEGLKAEERHRPVRDWILRQRQDDLDTLGLGLQGGIPNGYLVLDLSMQEALSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KLLGPHVEGLKAEERHRPVRDWILRQRQDDLDTLGLGLQGGIPNGYLVLDLSMQEALSGT
              550       560       570       580       590       600

              610       620  
pF1KE4 PCLLGPGPVLTVLALLLASTLA
       ::::::::::::::::::::::
CCDS45 PCLLGPGPVLTVLALLLASTLA
              610       620  

>>CCDS32356.1 MSLN gene_id:10232|Hs108|chr16              (630 aa)
 initn: 2757 init1: 2757 opt: 4119  Z-score: 4356.2  bits: 816.2 E(32554):    0
Smith-Waterman score: 4119; 98.6% identity (98.6% similar) in 630 aa overlap (1-622:1-630)

               10        20        30        40        50        60
pF1KE4 MALPTARPLLGSCGTPALGSLLFLLFSLGWVQPSRTLAGETGQEAAPLDGVLANPPNISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MALPTARPLLGSCGTPALGSLLFLLFSLGWVQPSRTLAGETGQEAAPLDGVLANPPNISS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LSPRQLLGFPCAEVSGLSTERVRELAVALAQKNVKLSTEQLRCLAHRLSEPPEDLDALPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LSPRQLLGFPCAEVSGLSTERVRELAVALAQKNVKLSTEQLRCLAHRLSEPPEDLDALPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 DLLLFLNPDAFSGPQACTRFFSRITKANVDLLPRGAPERQRLLPAALACWGVRGSLLSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DLLLFLNPDAFSGPQACTRFFSRITKANVDLLPRGAPERQRLLPAALACWGVRGSLLSEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DVRALGGLACDLPGRFVAESAEVLLPRLVSCPGPLDQDQQEAARAALQGGGPPYGPPSTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DVRALGGLACDLPGRFVAESAEVLLPRLVSCPGPLDQDQQEAARAALQGGGPPYGPPSTW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SVSTMDALRGLLPVLGQPIIRSIPQGIVAAWRQRSSRDPSWRQPERTILRPRFRREVEKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SVSTMDALRGLLPVLGQPIIRSIPQGIVAAWRQRSSRDPSWRQPERTILRPRFRREVEKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 ACPSGKKAPEIDESLIFYKKWELEACVDAALLATQMDRVNAIPFTYEQLDVLKHKLDELY
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ACPSGKKAREIDESLIFYKKWELEACVDAALLATQMDRVNAIPFTYEQLDVLKHKLDELY
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KE4 PQGYPESVIQHLGYLFLKMSPEDIRKWNVTSLETLKALLEVNKGHEMSPQ--------VA
       ::::::::::::::::::::::::::::::::::::::::::::::::::        ::
CCDS32 PQGYPESVIQHLGYLFLKMSPEDIRKWNVTSLETLKALLEVNKGHEMSPQAPRRPLPQVA
              370       380       390       400       410       420

            420       430       440       450       460       470  
pF1KE4 TLIDRFVKGRGQLDKDTLDTLTAFYPGYLCSLSPEELSSVPPSSIWAVRPQDLDTCDPRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TLIDRFVKGRGQLDKDTLDTLTAFYPGYLCSLSPEELSSVPPSSIWAVRPQDLDTCDPRQ
              430       440       450       460       470       480

            480       490       500       510       520       530  
pF1KE4 LDVLYPKARLAFQNMNGSEYFVKIQSFLGGAPTEDLKALSQQNVSMDLATFMKLRTDAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LDVLYPKARLAFQNMNGSEYFVKIQSFLGGAPTEDLKALSQQNVSMDLATFMKLRTDAVL
              490       500       510       520       530       540

            540       550       560       570       580       590  
pF1KE4 PLTVAEVQKLLGPHVEGLKAEERHRPVRDWILRQRQDDLDTLGLGLQGGIPNGYLVLDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PLTVAEVQKLLGPHVEGLKAEERHRPVRDWILRQRQDDLDTLGLGLQGGIPNGYLVLDLS
              550       560       570       580       590       600

            600       610       620  
pF1KE4 MQEALSGTPCLLGPGPVLTVLALLLASTLA
       ::::::::::::::::::::::::::::::
CCDS32 MQEALSGTPCLLGPGPVLTVLALLLASTLA
              610       620       630




622 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:38:41 2016 done: Mon Nov  7 17:38:41 2016
 Total Scan time:  3.430 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]