GENSCAN 1.0	Date run:  6-Nov-116	Time: 01:09:40

Sequence gi568815583r:89984269_90202390 : 218122 bp : 49.25% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    397    392    6                               1.05
 1.04 Term -  18236  17916  321  2  0  100   39   134 0.871   4.52
 1.03 Intr -  19707  19514  194  1  2   19   80   149 0.393   6.41
 1.02 Intr -  22232  22114  119  1  2   70   95    51 0.648   4.11
 1.01 Init -  25667  25648   20  2  2   79  110    33 0.635   3.14
 1.00 Prom -  43282  43243   40                              -4.56

 2.07 PlyA -  43847  43842    6                               1.05
 2.06 Term -  49006  48862  145  0  1   73   41   137 0.723   4.88
 2.05 Intr -  50791  50369  423  0  0   70   76   131 0.386   3.08
 2.04 Intr -  59017  58735  283  2  1   73   98   119 0.157   7.88
 2.03 Intr -  60273  60069  205  0  1   53   -1    87 0.066  -4.93
 2.02 Intr -  62820  62692  129  0  0  114   75   145 0.889  16.69
 2.01 Init -  67977  67912   66  0  0   51   94    55 0.267   2.47
 2.00 Prom -  68297  68258   40                              -7.96

 3.00 Prom +  69832  69871   40                              -6.46
 3.01 Init +  71070  71092   23  2  2   54   94    39 0.031   0.26
 3.02 Intr +  82842  84327 1486  0  1  111  116  2490 0.770 243.84
 3.03 Intr +  88803  88994  192  2  0  110   75   263 0.998  26.89
 3.04 Intr +  89848  90022  175  0  1   67   98   359 0.984  34.31
 3.05 Term +  95392  95561  170  2  2   91   43   375 0.998  31.34
 3.06 PlyA +  97905  97910    6                               1.05

 4.14 PlyA -  98811  98806    6                               1.05
 4.13 Term - 100085  99998   88  1  1   79   50   154 0.994   7.83
 4.12 Intr - 100299 100239   61  1  1   71   54    45 0.673  -2.81
 4.11 Intr - 100640 100531  110  1  2   86   54   185 0.647  14.83
 4.10 Intr - 100830 100733   98  0  2  107   99   166 0.999  18.41
 4.09 Intr - 101119 101007  113  2  2   50  113   113 0.998  10.10
 4.08 Intr - 102995 102844  152  1  2   92   71   268 0.999  25.31
 4.07 Intr - 103307 103171  137  2  2   86   42   259 0.999  20.47
 4.06 Intr - 104234 104091  144  2  0   87   78   216 0.999  20.98
 4.05 Intr - 104479 104319  161  2  2   88   96   197 0.981  20.21
 4.04 Intr - 105899 105816   84  0  0   46   90    63 0.508   2.09
 4.03 Intr - 106376 106211  166  2  1   96   86   248 0.990  24.93
 4.02 Intr - 107376 107285   92  1  2   95   67   179 0.210  16.21
 4.01 Init - 118122 118008  115  0  1   57   74   179 0.435  11.77
 4.00 Prom - 127961 127922   40                              -5.36

 5.00 Prom + 138218 138257   40                              -4.26
 5.01 Init + 144335 144419   85  1  1   52   44   140 0.338   6.98
 5.02 Intr + 149293 149364   72  2  0   82  102    57 0.277   5.88
 5.03 Intr + 153949 154080  132  2  0   58   99    46 0.614   3.32
 5.04 Term + 154497 154528   32  1  2   86   48    17 0.193  -4.48
 5.05 PlyA + 154668 154673    6                               1.05

 6.03 PlyA - 155282 155277    6                               1.05
 6.02 Term - 157567 157395  173  2  2  109   53    62 0.067   2.79
 6.01 Init - 181722 181683   40  0  1   63  119    53 0.310   6.25
 6.00 Prom - 190526 190487   40                              -5.96

 7.06 PlyA - 191964 191959    6                               1.05
 7.05 Term - 200848 200347  502  0  1   65   37   213 0.229   7.85
 7.04 Intr - 201242 200917  326  2  2  100   64   136 0.252   6.97
 7.03 Intr - 206252 206126  127  1  1  112   85    11 0.402   3.88
 7.02 Intr - 207698 207534  165  1  0   99   48    61 0.237   2.28
 7.01 Init - 213526 213477   50  1  2   71   80    18 0.027  -0.28
 7.00 Prom - 215140 215101   40                              -5.66

 8.00 Prom + 215757 215796   40                              -5.16
 8.01 Init + 217326 217467  142  2  1   93   92   287 0.336  27.90

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:89984269_90202390|GENSCAN_predicted_peptide_1|217_aa
MGHRAVRETASFTRTGPAQCLAHHRLPMNEELLWSGTGWASILEQADTGNQARLEEENVT
QTSNSPYPKESSSIPTALMQESQLQKVTGAPGGHLSGATDDRSEVLLRDWQLHPIRKMTA
RRRREGDEEEGGLSRGRLKTGRRDPARHPHPHAPRQRAPVLGPRPAAPRRCPGGDPAAPS
VRRPVALGDAPSPASGALSSPPPPAGWDAQQPHPLRE

>gi568815583r:89984269_90202390|GENSCAN_predicted_CDS_1|654_bp
atgggccaccgggcagtcagggagactgcaagcttcacgaggacgggacctgcacagtgt
ctagcacatcacagactgccaatgaatgaggagctgctgtggtctggaacaggctgggcc
agcatcctggagcaggcagacacaggcaaccaggccaggctggaggaagaaaatgtgacc
caaacatccaattccccctacccaaaagaaagcagctctatccccacggccctcatgcag
gaaagccagctccagaaggtcactggggcaccaggtgggcacctctctggagctacagat
gaccgatcagaggttctgctccgagactggcagctccatccaattaggaaaatgaccgcg
agaagacggagagagggcgacgaggaggaaggggggctgagccgcgggaggctcaagacg
ggccgtagggaccccgcccgccacccccacccccacgcccccagacagcgagcgccggtc
ctgggtccccggcccgcggcgccccgacgctgtcccggcggagatcccgcggcgcccagc
gtgcggcggccagtggccctcggggacgcccccagccccgccagcggcgcgctcagctct
cccccacccccggccggctgggacgcgcaacaaccccacccgctccgagaataa

>gi568815583r:89984269_90202390|GENSCAN_predicted_peptide_2|416_aa
MGMKKGALGLQEPSSCVSVWLQASVAVRGHLHGRKETFLPKLEKPDGLAGLPWQLPGCQQ
YAEKQDVSTQAAKPKVAGPLFGEGYPAQLSVQLVSCGPAPFLTLSPCVMFTRTPPSPALA
GNGDTTLRQSGEARLLYESPRALNQVAGQMRGFSVRQLPWLEVKAVATHPAWAVSTQFSG
CLHTGGARSPVGCGVKGILSQPWDGLSPRGTAPKKPAACSGWALTPGGDPKSQYYTGLFT
LLEPPSDDGRQRPSRHPFYQQGSPGAPAIKPLSLSEQRVLTASFLGACNSEDPNLFSPTL
GRCGRGLSPQQAPGVQRKCTCRQNLRQVEPGAPPTARTKKAQKACKGVLGSRVAGEQAGL
SEGVRRAGGSNINKQFSPESCHVGSTVLTLAHTLFEMKPPIAHLDVILPMSNYRSF

>gi568815583r:89984269_90202390|GENSCAN_predicted_CDS_2|1251_bp
atggggatgaagaaaggggccctaggtcttcaggagccctcgagctgtgtgagtgtctgg
ctgcaggccagcgtggctgtgcgtgggcatcttcatgggcgtaaggagacgttcttgccc
aaactggaaaaacctgatggccttgcaggcctgccctggcagcttccgggttgccagcag
tatgctgagaagcaggatgtgtcaacacaggctgccaaacccaaggtggcgggcccctta
tttggtgagggttatccagctcagctgtcggtccagcttgtgtcgtgtggaccggccccc
ttcctcacactcagcccctgtgtcatgttcacacggacgccacctagccccgccttggca
gggaatggcgacaccacgctccgccagagtggggaggcccgtctcctctatgagagccct
cgggcccttaaccaggtagcggggcagatgagggggttctcagtgaggcagctgccctgg
ctggaggtgaaagccgtggcaactcaccctgcctgggccgtgtccacccagttctccggc
tgcctgcacacaggaggtgctcggtccccggtggggtgtggggtgaagggcattctgagt
cagccctgggatgggctgtcccctcgagggactgctccaaagaagcccgccgcctgctca
ggctgggccctcactccaggaggggatccaaaatcccagtactatacgggcctctttacc
ttgctagaacctccttctgatgacggaaggcagaggccctccagacaccccttctaccag
cagggaagccctggggctccggccatcaagcctctttctctgagtgaacagagggtccta
acagcatcgtttctgggagcttgcaactcagaagatccaaatctcttcagcccgaccttg
gggcgatgtggaagaggtctaagtccccaacaggcgccaggtgtgcaaaggaaatgcacc
tgcaggcaaaacctgaggcaggtggagccgggtgccccacccacggccagaacaaagaag
gctcagaaggcctgcaagggtgtcctgggctctagggtagcaggagagcaggcgggcctc
tcagaaggggtgagaagagctggcggatctaacatcaacaagcagtttagtcctgagtcc
tgccacgtggggtcaacagtgctcaccctggcccacacgctgttcgagatgaagccacca
atcgcccatttggatgtcatcctgccaatgtcaaactacagaagtttctaa

>gi568815583r:89984269_90202390|GENSCAN_predicted_peptide_3|681_aa
MCEEAVCSDALLASRHGMEGFMDSGTQTDAVVVLSLAQAAVLGLVSENELFGATISAEAF
YPDLGPELSGAAMGEPEPPGPDVYQLACNGRALEEPAEEEVLEVEAACEKHTRRKTRPPV
RLVPKVKFEKVEEEEQEVYEVSVPGDDKDAGPAEAPAEAASGGCDALVQSSAVKMIDLSA
FSRKPRTLRHLPRTPRPELNVAPYDPHFPAPARDGFPEPSMALPGPEALPTECGFEPPHL
APLSDPEAPSMESPEPVKPEQGFVWQEASEFEADTAGSTVERHKKAQLDRLDINVQIDDS
YLVEAGDRQKRWQCRMCEKSYTSKYNLVTHILGHNGIKPHSCPHCSKLFKQPSHLQTHLL
THQGTRPHKCQVCHKAFTQTSHLKRHMLLHSEVKPYSCHFCGRGFAYPSELKAHEVKHES
GRCHVCVECGLDFSTLTQLKRHLASHQGPTLYQCLECDKSFHYRSQLQNHMLKHQNVRPF
VCTECGMEFSQIHHLKQHSLTHKGVKEFKCEVCGREFTLQANMKRHMLIHTSVRPYQCHI
CFKTFVQKQTLKTHMIVHSPVKPFKCKVCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSK
FNLKGNLSRHMKVKHGVMDIGLDSQDPMMELTGTDPSELDGQQEMEDFEENAYSYASVDS
SAEASVLTEQAMKEMAYYNVL

>gi568815583r:89984269_90202390|GENSCAN_predicted_CDS_3|2046_bp
atgtgtgaagaggccgtgtgcagcgatgccctcctagctagccgtcacgggatggagggc
ttcatggactcagggacacagacggacgccgtggtggtgctgtccttggctcaggccgcc
gtgcttggcctggtctccgaaaatgagctctttggagctaccataagcgccgaggccttc
tacccggacctggggcccgagctttcaggggcagccatgggagagcccgagccaccaggc
cccgacgtctaccagctggcctgcaacgggagggccttggaggagccggcggaggaggag
gtgctggaggtggaggcagcctgtgagaagcacacccggcggaagacgcggccacctgtg
cggttggtgcccaaggtcaagttcgagaaggtggaggaggaggaacaggaggtctatgag
gtttctgtgccaggtgacgacaaggacgcagggccagcagaagcccccgccgaggcggcc
agtggcggctgcgacgccctggtgcagagcagcgccgtcaagatgatcgacctcagcgcc
ttcagccgcaagccccggacgctccggcatctgccccgaaccccgaggccggagctgaac
gtggccccatatgaccctcacttcccggccccggcccgggatggcttccccgagcccagc
atggcgctgcctgggccagaggccttgcccacagagtgtgggttcgagccaccccacctg
gcccccctgagtgaccccgaggcccccagcatggagtccccggagcctgtcaagccggaa
cagggcttcgtgtggcaggaggccagtgagttcgaggctgacacggcgggttcgaccgtg
gaacgccacaagaaggcccagctggatcggctggacatcaacgtgcagattgacgactcc
tatctggtggaggcgggcgaccgccagaagcgctggcagtgccgcatgtgcgagaagtcc
tacacgtccaagtacaacctggtgacgcacatcctgggccacaacggcatcaagccacac
tcgtgcccacactgcagcaagctcttcaagcagcccagccacctgcagacgcacctgctg
acgcaccagggcacccggccccacaagtgccaggtatgccacaaggccttcacgcagacc
agccacctcaagcgccacatgctgctgcactcggaggtcaagccctacagctgccacttc
tgcggccgcggcttcgcctaccccagcgagctcaaggcccacgaagtgaagcatgagagt
ggccgctgccatgtctgcgtcgagtgcggcctggacttctccaccctgacccagctcaag
cgccacctggcctcccaccagggccccaccctctaccagtgcctcgagtgtgacaagtcc
ttccactaccgcagccagttgcagaaccacatgctcaagcaccagaacgtgcgacccttc
gtgtgcactgaatgcggcatggagttcagccagattcaccacctcaagcagcactccctc
acccacaagggcgtgaaggagttcaagtgcgaggtgtgtggccgggagttcaccctacag
gcgaacatgaagcggcacatgctgatccacaccagcgtccggccctaccagtgccacatc
tgcttcaagacctttgtacagaagcagactctcaagacccacatgattgtacactcgccc
gtgaagccattcaaatgcaaggtgtgcgggaagtccttcaaccgcatgtacaacctgctg
ggccacatgcacctgcacgccggcagcaagcccttcaagtgcccctactgctccagcaag
tttaatctcaagggcaacctgagccggcacatgaaggtcaagcatggcgtcatggacatc
ggcctggacagccaagaccccatgatggagctgacaggcactgacccttcagagctcgac
ggccagcaggagatggaggacttcgaggagaacgcctacagctatgcgagcgtggacagc
agcgccgaggccagtgtcctcactgaacaggccatgaaagagatggcctactacaatgtg
ctatag

>gi568815583r:89984269_90202390|GENSCAN_predicted_peptide_4|506_aa
MAGYLRVVRSLCRASGSRPAWAPAALTAPTSQEQPRRHYADKRIKVAKPVVEMDGDEMTR
IIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDE
ARVEGQWCFCFTLALTVVGVIGDRAEEEEEEEEFKLKKMWKSPNGTIRNILGGTVFREPI
ICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNF
PAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFDK
HYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTS
VLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLI
RFAQMLEKVCVETVESGAMTKDLAGCIHGLSKCVAWGGEQLPGKTDPAGACRISVASCVK
LNEHFLNTTDFLDTIKSNLDRALGRQ

>gi568815583r:89984269_90202390|GENSCAN_predicted_CDS_4|1521_bp
atggccggctacctgcgggtcgtgcgctcgctctgcagagcctcaggctcgcggccggcc
tgggcgccggcggccctgacagcccccacctcgcaagagcagccgcggcgccactatgcc
gacaaaaggatcaaggtggcgaagcccgtggtggagatggatggtgatgagatgacccgt
attatctggcagttcatcaaggagaagctcatcctgccccacgtggacatccagctaaag
tattttgacctcgggctcccaaaccgtgaccagactgatgaccaggtcaccattgactct
gcactggccacccagaagtacagtgtggctgtcaagtgtgccaccatcacccctgatgag
gcccgtgtggaaggccagtggtgtttctgcttcactctggctctgacagtggtaggtgtc
atcggtgacagggctgaggaggaggaggaggaggaagagttcaagctgaagaagatgtgg
aaaagtcccaatggaactatccggaacatcctgggggggactgtcttccgggagcccatc
atctgcaaaaacatcccacgcctagtccctggctggaccaagcccatcaccattggcagg
cacgcccatggcgaccagtacaaggccacagactttgtggcagaccgggccggcactttc
aaaatggtcttcaccccaaaagatggcagtggtgtcaaggagtgggaagtgtacaacttc
cccgcaggcggcgtgggcatgggcatgtacaacaccgacgagtccatctcaggttttgcg
cacagctgcttccagtatgccatccagaagaaatggccgctgtacatgagcaccaagaac
accatactgaaagcctacgatgggcgtttcaaggacatcttccaggagatctttgacaag
cactataagaccgacttcgacaagaataagatctggtatgagcaccggctcattgatgac
atggtggctcaggtcctcaagtcttcgggtggctttgtgtgggcctgcaagaactatgac
ggagatgtgcagtcagacatcctggcccagggctttggctcccttggcctgatgacgtcc
gtcctggtctgccctgatgggaagacgattgaggctgaggccgctcatgggaccgtcacc
cgccactatcgggagcaccagaagggccggcccaccagcaccaaccccatcgccagcatc
tttgcctggacacgtggcctggagcaccgggggaagctggatgggaaccaagacctcatc
aggtttgcccagatgctggagaaggtgtgcgtggagacggtggagagtggagccatgacc
aaggacctggcgggctgcattcacggcctcagcaagtgcgtggcctggggtggagagcag
ttacctggcaagacagaccctgcgggtgcctgccgaatctcggtggcctcatgtgtgaag
ctgaacgagcacttcctgaacaccacggacttcctcgacaccatcaagagcaacctggac
agagccctgggcaggcagtag

>gi568815583r:89984269_90202390|GENSCAN_predicted_peptide_5|106_aa
MTVRGKLRSGQVNEHRKVSQGSGNQEAIRERSTTTLGLRTNQPKEHLTNFKSARLHAGEI
NALLLTQSLLVDSLHTDTHDRYSTHRYRGPTVFSQAGTNGFRSYGV

>gi568815583r:89984269_90202390|GENSCAN_predicted_CDS_5|321_bp
atgactgtgcgggggaagctccgaagtggacaagtcaacgagcaccggaaggtgtcccag
ggatctggcaatcaagaggccatcagagaaagatccaccacgaccttgggtcttcggacc
aaccagcccaaggaacatctcaccaattttaaatcggcccgcctgcacgcaggtgaaata
aacgccttgttgctcacacaaagcctgttggtggactctcttcacacggacacgcatgac
agatacagcacccacagatacagagggccaactgtattttcccaggctggtacaaatgga
tttagatcttatggagtctga

>gi568815583r:89984269_90202390|GENSCAN_predicted_peptide_6|70_aa
MLAPFPGYTDEEAELADSLGTSHSPVPSSPCRSCHKLAAGVWRTSNISKDVRLWEAEDFT
ARGESKPSGR

>gi568815583r:89984269_90202390|GENSCAN_predicted_CDS_6|213_bp
atgcttgcaccctttccaggatatacggatgaggaggctgagttggctgactcattaggc
acttcccacagtccagttccttcatccccctgccgctcctgccacaagcttgctgctgga
gtctggaggacctcaaatatttccaaggacgtcagactttgggaggctgaggacttcacg
gcccgaggggagagcaagccgtccggccgctga

>gi568815583r:89984269_90202390|GENSCAN_predicted_peptide_7|389_aa
MITIPYAFIQAIDKNIGGWAAAQLQHQYMLKRKRHQLAHPVYSFKSANGCQVLRAGSFLG
AAPSAAEGIHPGEEELSDPGVSPSPQVTWWLPLLLPDRALLLVLMLIPESGQEQPSPSST
LVLSEKKEAMTKGLTRRSYPRPFRRGPGLFRIPNDFPPGPGPGFRSRGGALARCERCSKA
PGGHGNAGPASCAAMATGSPGGGPQCPSERAGGAFWGEGPGGSGSHLARHPPRLPGVSQG
QRTVIAPRGAALPGVSTDSSPLPGRPGAAPGDPESRAHSLSPARRPRKCWAPAKPRPAPP
RSARVYGNCPEGASGICLMRAVPPAPPPPPAPGHLHQRWTRCHDHPGLSGPPPHDRWSAQ
VSRGAQGTVRSFTLGDSASLDLGHRGRPH

>gi568815583r:89984269_90202390|GENSCAN_predicted_CDS_7|1170_bp
atgataaccattccttatgcctttattcaagctattgataaaaatattgggggctgggca
gcagctcagctgcagcatcagtacatgttgaagaggaagcgacaccagctggcacaccct
gtgtattctttcaaatcagccaatggctgccaagtcctcagggctgggagcttccttggg
gcagcgccttctgcagcagagggcatccaccccggggaggaggagctctctgaccctgga
gtttccccatcacctcaggtcacctggtggctgccactcttactcccagacagagccttg
ctcttggttctgatgctgatcccagagagtgggcaggaacagccttctccttctagcacc
ttggtgctcagtgagaagaaagaagccatgacaaagggcctaactcggaggtcatatcca
cgaccattccgcaggggcccaggccttttccgaattccaaatgacttccccccaggacca
ggtcccgggtttaggagtaggggtggtgcactggcgcgatgtgaacgctgctcaaaggcc
cccggtggccatgggaacgcgggcccagcctcctgcgctgccatggcaacaggctccccg
ggcggcgggccccagtgcccatcagagcgtgcaggtggcgccttctggggagaggggccg
ggcgggagcggctcccacctcgccaggcaccccccgcgcctacctggagtgagtcagggt
cagcgcacggtcatcgccccccgcggggccgctcttcctggagtgtccactgactcgtcc
cccttgccaggccggcccggcgcagcccctggggacccggagtctcgggcgcacagcctc
agtccggcgcggcgtccccggaaatgctgggcccccgccaagccccgcccagccccgccc
cgctctgcccgtgtttacgggaattgtccagagggcgcctccgggatttgcctgatgcgg
gccgtgccccccgccccaccaccgccaccggcccccggccatttgcaccaacgatggact
cgatgccacgaccaccctggcctgtcgggtccgcctccccacgaccgctggtcggcccaa
gttagccgtggagcccaagggactgtgcggtccttcaccttgggagactcggcctcgctg
gacctgggccacagggggcggcctcactag

>gi568815583r:89984269_90202390|GENSCAN_predicted_peptide_8|48_aa
MGLRSWLAAPWGALPPRPPLLLLLLLLLLLQPPPPTWALSPRISLPLX

>gi568815583r:89984269_90202390|GENSCAN_predicted_CDS_8|144_bp
atgggcctgaggagctggctcgccgccccatggggcgcgctgccgcctcggccaccgctg
ctgctgctcctgctgctgctgctcctgctgcagccgccgcctccgacctgggcgctcagc
ccccggatcagcctgcctctggnn