GENSCAN 1.0 Date run: 7-Nov-116 Time: 02:13:40 Sequence gi568815597f:241750426_241989597 : 239172 bp : 41.28% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 3654 3668 15 2 0 66 110 10 0.697 1.31 1.02 Intr + 6858 7034 177 2 0 56 95 131 0.883 9.79 1.03 Intr + 15793 15926 134 0 2 99 84 108 0.863 10.02 1.04 Intr + 16620 16735 116 0 2 9 81 78 0.357 -1.63 1.05 Intr + 22367 22506 140 0 2 64 80 116 0.747 7.66 1.06 Intr + 32847 32956 110 2 2 43 102 85 0.885 3.56 1.07 Intr + 37424 37609 186 2 0 123 69 146 0.909 14.08 1.08 Intr + 40166 40271 106 2 1 59 65 59 0.855 -0.00 1.09 Intr + 44782 44862 81 0 0 125 65 8 0.666 1.12 1.10 Intr + 45832 45945 114 0 0 60 106 93 0.965 8.02 1.11 Intr + 71640 71806 167 2 2 82 25 90 0.127 -0.06 1.12 Term + 81695 82061 367 2 1 56 49 369 0.819 22.89 1.13 PlyA + 82636 82641 6 1.05 2.00 Prom + 85282 85321 40 -5.35 2.01 Init + 89199 89289 91 2 1 27 80 81 0.069 1.90 2.02 Intr + 97403 97847 445 0 1 18 79 319 0.223 15.53 2.03 Intr + 97849 97928 80 1 2 42 100 87 0.673 3.58 2.04 Term + 98920 99080 161 2 2 50 46 97 0.582 -1.18 2.05 PlyA + 99929 99934 6 1.05 3.00 Prom + 99938 99977 40 -9.25 3.01 Init + 100001 100161 161 1 2 116 97 78 0.996 10.85 3.02 Intr + 101867 101986 120 2 0 106 89 17 0.801 2.29 3.03 Intr + 102933 103056 124 0 1 95 69 120 0.899 10.47 3.04 Intr + 106920 107057 138 2 0 57 73 200 0.786 15.14 3.05 Intr + 108081 108293 213 2 0 81 116 129 0.997 12.99 3.06 Term + 110092 110292 201 0 0 23 47 240 0.882 9.81 3.07 PlyA + 110946 110951 6 1.05 4.00 Prom + 111026 111065 40 -7.45 4.01 Init + 112655 112756 102 1 0 55 92 17 0.432 -0.91 4.02 Intr + 116405 116630 226 1 1 114 76 80 0.719 6.04 4.03 Intr + 121610 121853 244 0 1 32 80 151 0.629 4.33 4.04 Intr + 128324 128918 595 2 1 73 107 444 0.888 36.44 4.05 Intr + 134889 135082 194 2 2 66 87 162 0.969 11.27 4.06 Intr + 139040 139171 132 2 0 78 -5 150 0.076 3.54 4.07 Intr + 147930 148248 319 0 1 96 75 123 0.730 6.84 4.08 Intr + 157686 157784 99 2 0 34 109 58 0.056 1.89 4.09 Intr + 158526 158638 113 2 2 31 99 92 0.385 2.86 4.10 Intr + 164719 164866 148 1 1 44 51 109 0.307 2.12 4.11 Intr + 165896 166055 160 1 1 86 35 178 0.331 10.94 4.12 Intr + 168587 168656 70 0 1 119 48 48 0.073 1.22 4.13 Intr + 173819 174035 217 2 1 75 0 92 0.077 -3.32 4.14 Term + 174174 174239 66 2 0 110 49 119 0.420 7.16 4.15 PlyA + 176165 176170 6 1.05 5.00 Prom + 181058 181097 40 -6.65 5.01 Sngl + 183816 184163 348 2 0 3 34 331 0.887 14.99 5.02 PlyA + 184310 184315 6 1.05 6.00 Prom + 196337 196376 40 -5.45 6.01 Sngl + 207342 208637 1296 2 0 61 33 1313 0.995 118.84 6.02 PlyA + 209626 209631 6 1.05 7.03 PlyA - 210813 210808 6 1.05 7.02 Term - 218874 218827 48 0 0 60 45 118 0.607 1.03 7.01 Init - 228844 228617 228 1 0 67 53 193 0.796 11.17 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init + 91879 91986 108 0 0 80 107 83 0.841 9.67 S.002 Term + 139040 139175 136 2 1 78 36 159 0.916 6.21 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815597f:241750426_241989597|GENSCAN_predicted_peptide_1|570_aa MNKGQGKEDDIYLMVIWELPDVVPFLQDGKHAVHLRMSTRDRNMAIPFPDVELIVERNFS QPTDNPTMDLLRVNCIDLLQVEGYNLIAAGTLNGVIILWNFVTSTVKKVPSKPYMPETSS QPTPRSQTSPLPVSPVPPPSTQPPKSHGEQTDVMVGKQQPMDKKHPGIANLPEAQPPILV TAHEDGHLRLWTLEKFKQLLSWRAHSLEIIQVIYVEEKQVVLTASIDGSVRLWHALNGHY CGYFGQRRLFELSQTRDFILPCDVTEYPIEIKEESKFTEKQKYEYPLIFDREKWRKMSSV SLLFKRTPPKAFEVEQDFKFFKSLSSPKIRRYPLEGFVTENREAGIVFGSLPIYSISSPT SLRFLPLIGVEAQKDSSDGITGKKKGGHVQREKVFLEGTDQVDLLSSEDHTSHPHLLQVV LNPQGNSLTSQSSPSTELNQTFFVVKNTRKATYKRKYSAAKSKVEKKKKEKVFATVTKPV GGDKNGGTRVVKLRKMPRYYPTEDVPGKLLSHGNKPFSQHVRKLRASITPGTILILLTGG HRGKRVVFLKQLASGLLLVTGPLALNRVPL >gi568815597f:241750426_241989597|GENSCAN_predicted_CDS_1|1713_bp atgaacaaaggacagggtaaggaagatgatatctacctcatggtgatctgggagctgcct gatgttgtgcctttcctacaagatgggaaacatgctgtgcatctgagaatgtctactaga gacaggaacatggctattcctttcccagatgtcgagttgatagttgagaggaacttttct caacctactgataatcccaccatggatttattacgagtgaactgcattgatttactacaa gtagaaggatataatttgatagcagctggaaccttaaatggtgtgatcatcttatggaat tttgtgacgtctactgtcaaaaaagtaccctcaaagccctacatgcctgaaacatcttcc caacctactccccgctcccaaacttctccccttcctgtatccccagtgccaccaccatct actcagccaccaaagtcacatggtgaacaaacagatgtaatggtgggaaagcaacagcca atggacaaaaaacaccctggaattgccaatttaccagaagcccagccacctatccttgtc actgctcatgaggatggacacctccgcttgtggactctggagaaattcaagcagctgctt tcctggcgtgctcattctttggaaattattcaagtaatctatgtagaagaaaaacaagtg gtacttactgcctccatcgatggctcagtaaggctctggcatgccctcaatggacattat tgtggatattttggacagcgaaggctctttgaattatcacagacaagagatttcattttg ccttgtgatgttactgaatatcccatagaaataaaagaagaaagcaagttcacagagaag caaaaatatgaatatcctctgatatttgaccgggaaaaatggagaaaaatgagctcagtg tctctacttttcaaacgcacacctcccaaggcctttgaagtggaacaggatttcaagttt ttcaagtctctttcttctcctaagattcgaagatatcccttggaaggtttcgtgactgaa aacagagaggcagggattgttttcggctctctgcctatatacagtatatcaagccccact agtctaagatttcttccactgattggcgtagaagcccaaaaggactcttcagatggcatt acaggaaagaagaagggaggtcatgttcaacgtgaaaaagtttttctagaggggactgac caagtggatctactctcatctgaagaccatactagccacccacacttacttcaagtggtg ctgaatcctcaaggaaattccctgacctctcaatcctcaccatccacagagctaaatcag actttctttgtggtaaagaacacaagaaaggccacgtataagaggaagtactcagccgct aaatccaaggttgaaaagaaaaagaaggagaaggtttttgcaactgttacaaaaccagtt ggtggtgacaagaacggtggtacccgggtggttaaacttcgcaaaatgcctagatattat cctactgaagatgtgcctggaaagctgctgagccatggcaacaaacccttcagtcagcac gtgagaaaactgcgagccagcattaccccggggaccattctgatcctcctcactggaggc cacaggggcaagagggtggttttcctgaagcagctggctagtggcttattacttgtgact ggacctctggccctcaatcgagttcctctatga >gi568815597f:241750426_241989597|GENSCAN_predicted_peptide_2|258_aa MSEVDLTIPPASQSYNENQARVLWQPLAQAGLKSLNINARRRSFNISLQNWGCSQEGTTT PSSPGGCKHSQLPRRCSPSAISASATRALKKPHGVRAGSSGCSRMAVSRCLPSETESSGR NPMSWKPQEAEPGCGIRVDVTSSGRGRKEPAQIERSAFRALCRQVTRVLRCRPWVLWPHE LGASERVSPTAIGSAQGEEESPFSEEWGEVVSSERVVTVPESLYRKGLGGCNRNGRGWKV KAFVLKLYLHSRRSFTVL >gi568815597f:241750426_241989597|GENSCAN_predicted_CDS_2|777_bp atgagtgaagtggatctgacaatacctcctgcttcacagagttataatgagaatcaagca agagtcctgtggcagcccttggcacaggcaggtttgaaaagcctcaacatcaacgcgcga cggcgctctttcaacatcagcctccagaactggggctgcagccaggagggaactacaacg cccagcagccccggcgggtgtaaacactcccaacttccgaggcggtgctcaccatcggcc atcagcgccagtgccactcgcgccctcaagaagccgcacggagttcgggccggcagcagc ggctgcagtcgtatggcagtgagccgctgtctacccagcgagacggagagctcaggacgc aaccctatgagttggaagccgcaggaggcggaaccgggttgcgggatacgcgttgacgtc acatcctctgggcggggccgcaaggaacccgcgcaaattgaaaggtcagcctttcgcgcg ctgtgtaggcaagttacccgtgttctgcgttgccggccgtgggtgctctggccacatgag ttaggggcgtcggagcgggtttctccaaccgcaatcggctccgctcaaggggaggaggag agtcccttctcggaagagtggggggaggtcgtttcatcagaaagggttgtgacagttcca gaatctctgtatagaaagggcttagggggctgcaaccggaatggaagggggtggaaagtt aaagcatttgtcttgaagctgtatttgcatagcagacgcagtttcacagttctttag >gi568815597f:241750426_241989597|GENSCAN_predicted_peptide_3|318_aa MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK KVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACK VLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNA YEDDVDPETLSYAGQYPF >gi568815597f:241750426_241989597|GENSCAN_predicted_CDS_3|957_bp atggggatacagggattgctacaatttatcaaagaagcttcagaacccatccatgtgagg aagtataaagggcaggtagtagctgtggatacatattgctggcttcacaaaggagctatt gcttgtgctgaaaaactagccaaaggtgaacctactgataggtatgtaggattttgtatg aaatttgtaaatatgttactatctcatgggatcaagcctattctcgtatttgatggatgt actttaccttctaaaaaggaagtagagagatctagaagagaaagacgacaagccaatctt cttaagggaaagcaacttcttcgtgaggggaaagtctcggaagctcgagagtgtttcacc cggtctatcaatatcacacatgccatggcccacaaagtaattaaagctgcccggtctcag ggggtagattgcctcgtggctccctatgaagctgatgcgcagttggcctatcttaacaaa gcgggaattgtgcaagccataattacagaggactcggatctcctagcttttggctgtaaa aaggtaattttaaagatggaccagtttggaaatggacttgaaattgatcaagctcggcta ggaatgtgcagacagcttggggatgtattcacggaagagaagtttcgttacatgtgtatt ctttcaggttgtgactacctgtcatcactgcgtgggattggattagcaaaggcatgcaaa gtcctaagactagccaataatccagatatagtaaaggttatcaagaaaattggacattat ctcaagatgaatatcacggtaccagaggattacatcaacgggtttattcgggccaacaat accttcctctatcagctagtttttgatcccatcaaaaggaaacttattcctctgaacgcc tatgaagatgatgttgatcctgaaacactaagctacgctgggcagtatcctttctga >gi568815597f:241750426_241989597|GENSCAN_predicted_peptide_4|894_aa MSLTPPKRMLPNNNGKHFLSICYFPGALLSTLDIPAHSRSHSWDDKTCQKSANVSSIWHR NYSPRPESGTVSDAPQLKENPSTVGVERVISTKGLNLPRKSSIVKRPRSELSEDDLLSQY SLSFTKKTKKNSSEGNKSLSFSEVFVPDLVNGPTNKKSVSTPPRTRNKFATFLQRKNEES GAVVVPGTRSRFFCSSDSTDCVSNKVSIQPLDETAVTDKENNLHESEYGDQEGKRLVDTD VARNSSDDIPNNHIPGDHIPDKATVFTDEESYSFESSKFTRTISPPTLGTLRSCFSWSGG LGDFSRTPSPSPSTALQQFRRKSDSPTSLPENNMSDVSQLKSEESSDDESHPLREEACSS QSQESGEFSLQSSNASKLSQCSSKDSDSEVPGLYKSSSADSLSTTKIKPLGPARASGLSK KPASIQKRKHHNAENKPGLQIKLNELWKNFGFKKDSEKLPPCKKPLSPVRDNIQLTPEAE EDIFNKPECGRVQRAIFHLEDSESGGFLSRYRANGQVSWEYITINARGAESKKLLWILEK WAWSSISVCYLLQPRFQIVFQTCVRVIGVRTSFFIPRDKTQTPAKLTHERRQGTTMTVDC GSCEKDPCVRSTRVTFWSVWALLSATELQMLFGDQEQETKRLTPGGKGNLRDAAGSAPAL SVISSAQKGAEEKSRKLPIMVEGKGGVGQATWRKQEQEMGAVPHTCKHTDLHQNPLTVTR TASRTTESAMKKREDNTLVYIVDVKANKRQIKQAARKLTNTSVVKVHTPIRLMERRRRSP RRLEGVERPLMRHTGSFPDVLWVLLLCLDEPQFTSSTLMNLDLPIDFAVANNNAWDRTTG TGFGASTDQGLLIASGMTLSMFFFPSLSFIIYKPTQCEDDEDEDLYEDSVLLNQ >gi568815597f:241750426_241989597|GENSCAN_predicted_CDS_4|2685_bp atgtccctcactccacctaagagaatgcttcctaataataatggcaaacattttctgagc atttgctactttccaggtgctcttttaagcaccttagacatacctgcccattcaagaagt catagttgggatgacaaaacatgtcaaaagtcagctaatgttagcagcatttggcatagg aattactctcccagaccagagtcgggtactgtttcagatgccccacaattgaaggaaaat ccaagtactgtgggagtggaacgagtgattagtactaaagggttaaatctcccaaggaaa tcatccattgtgaaaagaccaagaagtgagctgtcagaagatgacctgttgagtcagtat tctctttcatttacgaagaagaccaagaaaaatagctctgaaggcaataaatcattgagc ttttctgaagtgtttgtgcctgacctggtaaatggacctactaacaaaaagagtgtaagc actccacctaggacgagaaataaatttgcaacatttttacaaaggaaaaatgaagaaagt ggtgcagttgtggttccagggaccagaagcaggtttttttgcagttcagattctactgac tgtgtatcaaacaaagtgagcatccagcctctggatgaaactgctgtcacagataaagag aacaatctgcatgaatcagagtatggagaccaagaaggcaagagactggttgacacagat gtagcacgtaattcaagtgatgacattccgaataatcatattccaggtgatcatattcca gacaaggcaacagtgtttacagatgaagagtcctactcttttgagagcagcaaatttaca aggaccatttcaccacccactttgggaacactaagaagttgttttagttggtctggaggt cttggagatttttcaagaacgccgagcccctctccaagcacagcattgcagcagttccga agaaagagcgattcccccacctctttgcctgagaataatatgtctgatgtgtcgcagtta aagagcgaggagtccagtgacgatgagtctcatcccttacgagaagaggcatgttcttca cagtcccaggaaagtggagaattctcactgcagagttcaaatgcatcaaagctttctcag tgctctagtaaggactctgattcagaggttcctgggctatataagtccagttctgcagac tctctttctacaaccaagatcaaacctctaggacctgccagagccagtgggctgagcaag aagccggcaagcatccagaagagaaagcatcataatgccgagaacaagccggggttacag atcaaactcaatgagctctggaaaaactttggatttaaaaaagattctgaaaagcttcct ccttgtaagaaacccctgtccccagtcagagataacatccaactaactccagaagcggaa gaggatatatttaacaaacctgaatgtggccgtgttcaaagagcaatattccaccttgaa gattctgaaagtggaggtttcttaagcagatacagagctaatggccaggtttcttgggag tacattacaataaatgcaagaggtgcagaaagcaagaaattgctctggatcttagaaaaa tgggcttggagctccattagtgtctgctaccttctgcaacccagattccaaattgttttc cagacttgtgttagagttattggtgtcagaacatcttttttcatccccagggataagaca caaacacctgcaaagctgactcatgaaaggagacaaggcactactatgacagtggattgt gggagctgtgagaaagacccctgtgtgaggagcacacgtgtgaccttctggagcgtctgg gcactcctctctgctacagaactacaaatgctgtttggagaccaggagcaggagaccaaa agactgacaccaggtggcaaagggaatctaagagatgcagcaggcagtgccccagccctc tcagtaattagcagtgcacagaagggagcagaggaaaaaagcaggaagcttccaatcatg gtagaaggcaaaggaggagtggggcaggccacatggcgaaagcaggagcaagagatgggg gcagtgccacatacttgtaaacacacagatctccaccagaacccacttactgtcacaagg acagcatcaaggaccactgagtcagccatgaagaagagagaagacaacacacttgtgtac attgtggatgttaaagccaacaagcgtcagatcaagcaggctgcgagaaagctcactaat actagtgtggtcaaagtccacaccccgatcaggctgatggagagaagaaggcggagcccc aggagactggaaggagtggagaggcccctgatgaggcataccgggtccttccctgatgtc ctctgggtactattgctttgtctggatgagccacaatttacgtcatccaccttaatgaac ctggacctgcctatagattttgctgttgcaaataacaatgcgtgggatagaaccacaggc acaggctttggagcaagcactgaccagggtttgctcattgcaagtggaatgaccttgagc atgtttttctttccaagcctcagttttatcatttataaacctactcagtgtgaagatgat gaggatgaagacctttatgaagactcagttctgcttaatcaatag >gi568815597f:241750426_241989597|GENSCAN_predicted_peptide_5|115_aa MSLFDVNANPKDPESITPEERAAETLKTTFLRTPGAAMATGGLNEVISKQGKWLRWTTGA ETGREDSNHQEGNENHGSEKDGIAGNRIKFFTAVKLQSQHFSRAFGWKSRKKALN >gi568815597f:241750426_241989597|GENSCAN_predicted_CDS_5|348_bp atgagtctctttgatgtgaatgctaacccaaaagatcccgaatcaatcaccccagaggaa agagctgccgagaccttgaaaacaacattcctccgaactcctggtgctgccatggcaact ggagggctgaatgaggtcatctcaaagcagggcaagtggctcaggtggaccacgggagca gagactgggcgtgaggactcaaaccaccaggagggaaatgaaaaccacggcagcgaaaag gatggaattgccggtaacagaataaaattcttcacagctgtgaagctacagtcacaacat tttagcagagcttttggctggaaaagtcggaaaaaggcactgaattga >gi568815597f:241750426_241989597|GENSCAN_predicted_peptide_6|431_aa MSSIRFLCQRCHQALKLSGSSESRSLPAAPAPTSGQAEPGDTREPGVTTREVTDAEEQQD GASSRSPPGDGSVSKGHANIFTLLGELGAMHMLSSIQKAAGDIFDIVSGQAVVDHPLCEE CTDSLLEQLDIQLALTEADSQNYQRCLETGELATSEDEAAALRAELRDLELEEARLVQEL EDVDRNNARAAADLQAAQAEAAELDQQERQHYRDYSALKRQQLELLDQLGNVENQLQYAR VQRDRLKEINCFTATFEIWVEGPLGVINNFRLGRLPTVRVGWNEINTAWGQAALLLLTLA NTIGLQFQRYRLIPCGNHSYLKSLTDDRTELPLFCYGGQDVFLNNKYDRAMVAFLDCMQQ FKEEAEKGELGLSLPYGIQVETGLMEDVGGRGECYSIRTHLNTQELWTKALKFMLINFKW SLIWVASRYQK >gi568815597f:241750426_241989597|GENSCAN_predicted_CDS_6|1296_bp atgtcttccatccgcttcctgtgccagcgctgccaccaggccctgaagctgagcggctcc tcggagtctaggagcctccctgcagccccggcgcccacctctgggcaggctgagcccgga gacacccgggagcccggcgtcaccaccagggaggtgacagacgctgaggagcaacaggac ggtgcctctagcagatcccctccaggcgatggcagtgtgtccaagggccatgccaacatc ttcaccctgctgggggagcttggcgccatgcacatgctcagtagcatccagaaggcagct ggtgacatttttgacatagtctctggccaagcagttgtggaccatcccctgtgtgaagaa tgcaccgacagtcttttagagcagctggacatccagctcgctctcacagaagctgacagt cagaactaccaacgctgcctggagaccggggagctggcgaccagcgaggacgaggcggcg gcgctgcgggcggagctgcgggacctggagctggaggaggccaggctggtgcaggagctg gaggatgtggacaggaacaatgcaagagcagcggcggatctccaggcagcccaggcagag gctgcggagctggaccagcaggagaggcagcactacagggactacagtgccttgaagcgg cagcagctggaactgcttgatcagctggggaacgtggagaaccagctgcagtatgccagg gtccagagggaccggctgaaggaaatcaactgtttcaccgccacgtttgagatctgggtg gagggccccttgggcgtcatcaataacttcaggttgggccgcctccccactgtccgtgtg ggctggaatgagattaacactgcctggggacaggcggccttgctgctccttaccctggcc aatacaattggactgcagtttcagaggtatcgactcatcccctgcggaaaccattcgtat ctgaagtctttaacagatgaccgcactgagctgccgttgttctgttatggggggcaggat gttttcctcaataacaagtatgaccgcgcgatggtggccttcctggactgcatgcagcag ttcaaggaagaggctgagaagggtgagctgggcctctctctgccctacgggatccaggtg gagacaggcctgatggaggacgttggcggccgaggggaatgctattccatcagaacccat ctgaacacgcaggagctgtggacaaaggcactcaagttcatgcttataaatttcaagtgg agtctcatctgggttgcctcaaggtatcaaaagtag >gi568815597f:241750426_241989597|GENSCAN_predicted_peptide_7|91_aa MARAPVRPGAALHSHGSVSPVVNCACEGSGLRAPRETLMPDDLRGSNFIPKPSPIPPPLP SDRILSSTKLVPGVKKYFPIINDTGERQDSG >gi568815597f:241750426_241989597|GENSCAN_predicted_CDS_7|276_bp atggccagagctccggtcagaccaggggcggcgttacattctcacgggagtgtgagtcct gtcgtgaactgcgcgtgtgagggctccgggttacgcgctcctcgtgagactctgatgcct gatgatctcagggggagcaatttcatccccaaaccatcccccatcccaccacctctgccc tcggaccggattttgtcttccacaaaactggtccctggtgtcaaaaagtatttccccatc ataaatgacaccggtgaacgacaagacagtggatga