GENSCAN 1.0	Date run:  5-Nov-116	Time: 06:29:21

Sequence gi568815590f:47943031_48160825 : 217795 bp : 44.18% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  16765  17226  462  2  0   58   74   285 0.845  17.23
 1.02 Intr +  17707  17854  148  2  1   32   73    89 0.907   1.09
 1.03 Intr +  18101  18184   84  2  0   91   77    99 0.933   8.04
 1.04 Intr +  18249  18396  148  0  1  107   89   -43 0.573  -2.06
 1.05 Intr +  18521  18650  130  1  1   42   96    58 0.838   2.27
 1.06 Intr +  19023  19186  164  1  2   69   84    45 0.890   1.89
 1.07 Intr +  19275  19376  102  2  0   90   99    49 0.989   6.57
 1.08 Intr +  19734  19829   96  2  0   52   74    90 0.922   4.21
 1.09 Intr +  19915  20010   96  0  0   90  110    14 0.941   4.01
 1.10 Intr +  21544  21682  139  0  1   72   90   154 0.999  14.04
 1.11 Intr +  23157  23377  221  1  2  126   62   312 0.993  30.42
 1.12 Intr +  24335  24455  121  1  1   74  110    11 0.893   1.97
 1.13 Intr +  26768  27027  260  0  2   73   87   277 0.917  23.28
 1.14 Intr +  27496  27846  351  0  0   46  113   336 0.628  27.42
 1.15 Intr +  28311  28438  128  2  2   71   62    73 0.962   2.48
 1.16 Intr +  29827  30034  208  1  1   67   76   340 0.839  29.78
 1.17 Intr +  31704  31932  229  2  1   46   21   255 0.859  12.04
 1.18 Intr +  32685  32818  134  1  2   68   92   109 0.999   9.66
 1.19 Term +  33656  33748   93  1  0  127   48    95 0.996   7.23
 1.20 PlyA +  33937  33942    6                               1.05

 2.00 Prom +  39205  39244   40                              -3.56
 2.01 Init +  48628  48699   72  0  0   51   82    81 0.505   4.87
 2.02 Intr +  49933  50128  196  0  1   60   37    52 0.385  -3.71
 2.03 Term +  51747  51778   32  1  2   94   47    94 0.746   3.92
 2.04 PlyA +  52050  52055    6                              -0.45

 3.04 PlyA -  54005  54000    6                               1.05
 3.03 Term -  55394  55267  128  0  2   78   38   152 0.664   7.64
 3.02 Intr -  65743  65286  458  0  2   90   18   272 0.033  13.26
 3.01 Init -  87254  87169   86  2  2   41  103    52 0.104   2.29
 3.00 Prom -  88922  88883   40                              -4.56

 4.00 Prom +  89379  89418   40                              -4.36
 4.01 Init +  90343  90391   49  0  1   86   28    26 0.349  -4.49
 4.02 Intr +  91912  92031  120  2  0  102  113    23 0.863   6.67
 4.03 Intr + 100003 100151  149  2  2   58   56   105 0.870   4.25
 4.04 Intr + 106823 106948  126  1  0  100  115    24 0.964   7.18
 4.05 Term + 117652 117798  147  0  0  142   28    75 0.962   4.80
 4.06 PlyA + 118322 118327    6                               1.05

 5.08 PlyA - 118641 118636    6                               1.05
 5.07 Term - 125164 124968  197  2  2   44   32   110 0.254  -1.43
 5.06 Intr - 132621 132498  124  0  1   73   74   136 0.566  10.86
 5.05 Intr - 140898 140645  254  1  2   42   33   191 0.117   6.15
 5.04 Intr - 142446 142286  161  2  2   69  106    36 0.303   3.13
 5.03 Intr - 142784 142654  131  2  2   63   45    74 0.427   0.09
 5.02 Intr - 159275 159201   75  2  0   95   86     2 0.266   0.41
 5.01 Init - 162399 162073  327  0  0   92   52   160 0.290   8.82
 5.00 Prom - 175745 175706   40                              -2.46

 6.09 PlyA - 178943 178938    6                               1.05
 6.08 Term - 183884 183724  161  0  2   54   53   113 0.348   2.50
 6.07 Intr - 187816 187770   47  0  2  108   77    62 0.400   5.15
 6.06 Intr - 190695 190592  104  0  2   19   68    54 0.123  -4.53
 6.05 Intr - 194347 194114  234  1  0   91   93    72 0.153   5.89
 6.04 Intr - 194616 194516  101  1  2   72   10    47 0.010  -4.87
 6.03 Intr - 203249 203115  135  0  0   91   49   102 0.177   7.14
 6.02 Intr - 206933 206848   86  1  2   55   61    91 0.000   2.56
 6.01 Init - 216069 215966  104  0  2   39  110    42 0.001   1.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 169138 169244  107  2  2  120   55    97 0.956   8.17
S.002 Intr + 208391 208527  137  2  2   44   53   154 0.915   7.71
S.003 Intr + 209615 209786  172  0  1   80   44   146 0.957   8.40
S.004 Intr + 210383 210465   83  2  2   93   76   100 0.906   8.58


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590f:47943031_48160825|GENSCAN_predicted_peptide_1|1104_aa
XGKKQYDKSLYTHTQKFPQESNCCTSKYRHLNTEKRRAARLQNDSGSQDPPAAQLGPVPT
QHRGAAAQDAFLPQAADQLMTGQGSTAAVRSGQGLLQPQQGATHTGSGARHAAESRSRAC
ARSARTRKCPYARRRGCGARRQELSRGPLREGLARGQTIWTKGGRARPTSGLRTGAERSG
TVPPCRCAVAPPGGGATYERRCDWYSEHYVVPGVDPEPPRQPAWKGHPRPDAWQRWVGAR
DPGAQPRAGRCRLVRTDTHSRLWPGCCLIRLPFASVWFGSVRRRGEDSTSTGELQPMPTS
PGVDLQSPAAQDVLFSSPPQMHSSAIPLDFDVSSPLTYGTPSSRVEGTPRSGVRGTPVRQ
RPDLGSAQKGLQVDLQSDGAAAEDIVASEQSLGQKLVIWGTDVNVAACKENFQRFLQRFI
DPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDKNLYRQLISYPQEVI
PTFDMAVNEIFFDRYPDSILEHQIQVRPFNALKTKNMRNLNPEDIDQLITISGMVIRTSQ
LIPEMQEAFFQCQVCAHTTRVEMDRGRIAEPSVCGRCHTTHSMALIHNRSLFSDKQMIKL
QESPEDMPAGQTPHTVILFAHNDLVDKVQPGDRVNVTGIYRAVPIRVNPRVSNVKSVYKT
HIDVIHYRKTDAKRLHGLDEEAEQKLFSEKRVELLKELSRKPDIYERLASALAPSIYEHE
DIKKLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSS
AVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIA
KAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTLLSRFDLIFLLLDPQDEAYD
RRLAHHLVALYYQSEEQAEEELLDMAVLKDYIAYAHSTIMPRLSEEASQALIEAYVDMRK
IGSSRGMVSAYPRQLESLIRLAEAHAKVRLSNKVEAIDVEEAKRLHREALKQSATDPRTG
IVDISILTTGMSATSRKRKEELAEALKKLILSKGKTPALKYQQLFEDIRGQSDIAITKDM
FEEALRALADDDFLTVTGKTVRLL

>gi568815590f:47943031_48160825|GENSCAN_predicted_CDS_1|3315_bp
nggggtaaaaagcagtatgacaaatccctttatacacatacacagaaattcccccaagaa
tctaattgctgtacttcaaaataccgtcatctaaacacagagaagcgccgggctgcccgg
ctccagaacgactcgggaagccaggacccacccgcggcccagctcgggccggtacccacc
cagcaccgcggggctgctgctcaggacgcattcctgccccaggccgcggatcagttgatg
accggccagggcagcaccgcagcggtccgcagcggacaaggtctcctgcagccgcagcag
ggagcaacgcacaccggctccggagcccgccatgccgccgagtcccgctcccgcgcgtgc
gcccgctcggcccggacccggaaatgcccctacgcgcggaggcggggctgcggggcgcgg
cggcaggaactttcccggggacccctgcgggaaggcctggccaggggtcagaccatctgg
accaaggggggccgagcgaggcctacttctggtttacgcacgggcgctgaaagaagcggc
actgtccccccctgccgatgcgcagtggcgcctcccggaggcggagccacgtacgagcgc
cgctgtgattggtactccgagcactatgtcgtccccggcgtcgaccccgagccgccgcgg
cagccggcgtggaagggccacccccgcccagacgcctggcagcgctgggtgggtgcgcgg
gacccgggcgctcagcctcgggctgggcgctgccgcttggtgcgcacagacacccacagc
aggctgtggcctgggtgctgcttaattcgattgccatttgcctctgtttggtttggttca
gtgagacgtagaggcgaggattccacctccacgggggagttgcagccgatgccaacctcg
cctggagtggacctgcagagccctgctgcgcaggacgtgctgttttccagccctccccaa
atgcattcttcagctatccctcttgactttgatgttagttcaccactgacatacggcact
cccagctctcgggtagagggaaccccaagaagtggtgttaggggcacacctgtgagacag
aggcctgacctgggctctgcacagaagggcctgcaagtggatctgcagtctgacggggca
gcagcagaagatatagtggcaagtgagcagtctctaggccaaaaacttgtgatctgggga
acagatgtaaatgtggcagcatgcaaagaaaactttcagagatttcttcagcgttttatt
gaccctctggctaaagaagaagaaaatgttggcatagatattactgaacctctatacatg
caacgacttggggagattaatgttattggtgagccatttttaaatgtgaactgtgaacac
atcaaatcatttgacaaaaatttgtacagacaactcatctcttacccacaggaagttatt
ccaacttttgacatggctgtcaatgaaatcttctttgaccgttaccctgactcaatctta
gaacatcagattcaagtaagaccattcaacgcattgaagactaagaatatgagaaacctg
aatccagaagacattgaccagctcatcaccatcagcggcatggtgatcaggacatcccag
ctgattcccgagatgcaggaggccttcttccagtgccaagtgtgtgcccacacgacccgg
gtggagatggaccgcggccgcattgcagagcccagtgtgtgcgggcgctgccacaccacc
cacagcatggcactcatccacaaccgctccctcttctctgacaagcagatgatcaagctt
caggagtctccggaagacatgcctgcagggcagacaccacacacagttatcctgtttgct
cacaatgatctcgttgacaaggtccagcctggggacagagtgaatgttacaggcatctat
cgagctgtgcctattcgagtcaatccaagagtgagtaatgtgaagtctgtctacaaaacc
cacattgatgtcattcattatcggaaaacggatgcaaaacgtctgcatggccttgatgaa
gaagcagaacagaaacttttttcagagaaacgtgtggaattgcttaaggaactttccagg
aaaccagacatttatgagaggcttgcttcagccttggctccaagcatttatgaacatgaa
gatataaagaagctctttggcgggacaaggaaggattttagtcacactggaaggggcaaa
tttcgggctgagatcaacatcttgctgtgtggcgaccctggtaccagcaagtcccagctg
ctgcagtacgtgtacaacctcgtccccaggggccagtacacgtctgggaagggctccagt
gcagttggcctcactgcgtacgtaatgaaagaccctgagacaaggcagctggtcctgcag
acaggtgctcttgtcctgagtgacaacggcatctgctgtatcgatgagttcgacaagatg
aatgaaagtacaagatcggtattgcatgaagtcatggaacagcagactctgtccattgca
aaggctgggatcatctgtcagctcaatgcgcgcacctctgtcctggcagcagcaaatccc
attgagtctcagtggaatcctaaaaaaacaaccattgaaaacatccagctgcctcatact
ttattatcaaggtttgatttgatcttcctcttgctggaccctcaggacgaagcctatgac
aggcgtctggctcaccacctggtcgcactgtactaccagagcgaggagcaggcagaggag
gagctcctggacatggcggtgctaaaggactacattgcctacgcgcacagcaccatcatg
ccgcggctaagtgaggaagccagccaggctctcatcgaggcttatgtagacatgaggaag
attggcagtagccggggaatggtttctgcataccctcgacagctagagtcattaatccgc
ttagcagaagcccatgctaaagtaagattgtctaacaaagttgaagccattgatgtggaa
gaggccaaacgcctccatcgggaagctctgaagcagtctgcaactgatccccggactggc
atcgtggacatatctattcttactacggggatgagtgccacctctcgtaaacggaaagaa
gaattagctgaagcattgaaaaagcttattttatctaagggcaaaacaccagctctaaaa
taccagcaactttttgaagatattcggggacaatctgacatagcaattactaaagatatg
tttgaagaagcactgcgtgccctggcagatgatgatttcctgacagtgactgggaagacc
gtgcgcttgctctga

>gi568815590f:47943031_48160825|GENSCAN_predicted_peptide_2|99_aa
MDVRQTQFGPRNVLEYRLEVGEVQLGDVSLVSLSNPSGLKELVNKGAVSDRGPFGSEKSR
LLPDGGVGMKNVIGIFGVCVNIDSSAFGNELKRLLLLAL

>gi568815590f:47943031_48160825|GENSCAN_predicted_CDS_2|300_bp
atggatgtgaggcagactcagtttggcccgaggaatgtgctggaataccgattagaagtt
ggtgaagtgcagttgggagatgtaagcctagtaagtctgagtaatcctagtggcctgaag
gagttggtaaataagggagccgttagtgataggggtccctttggcagtgagaaatcccgt
ctcttgccagatggtggcgtgggaatgaagaatgtgataggcatatttggagtctgtgta
aatattgactcgtctgcctttggaaacgagctaaagcggctgctgctgctagcgctctaa

>gi568815590f:47943031_48160825|GENSCAN_predicted_peptide_3|223_aa
MYKLTADVADTEHRILSPGHYYLVGKTTIAFSLQLGPAPAGTYGGARAGATPPPARRRAA
DARARPANPTAAGASAPVPPGPRLRSAESAAFETAHSGFSRTVSARAPAADGGAEPGRSG
KSRSPAREPTCGDRHLLLQPDAAARTHARTVARHFRERAALHASQRTPPPAGAGRPEGQR
ARTPDTAVTFSIPDKFPRKGNALFHVLVTGSLFFFYVRPYFHS

>gi568815590f:47943031_48160825|GENSCAN_predicted_CDS_3|672_bp
atgtataaactgacagcagatgttgctgatactgaacacagaatcctttccccaggacat
tactatctcgtggggaagacaaccatagccttcagcctacaactcggacccgcgcccgcc
ggaacctacgggggcgcccgcgcgggagccaccccgcccccagcccgccggcgcgcggcc
gacgcgcgagcacgacccgccaacccgacggccgccggggcctcggcgccggtcccaccc
ggtcccaggctacgctctgcggagagcgcggcattcgagacagcgcactcgggcttctcc
cgcacggtcagcgctcgggcgccagcagcagacggaggggcagagccgggtcggagcgga
aaatcacgcagcccggcccgggaaccgacctgtggagaccgccatcttctcctgcagccc
gacgcagccgcccgcacgcacgcacgaaccgtcgcgcgtcacttccgggagcgcgccgcc
ctgcacgcgtcacagcggactccgcccccggcgggcgcggggcgacccgagggacagcgc
gcacggacacctgacacggcggttaccttctctattccagacaagttccccaggaaaggg
aacgccctcttccacgtccttgtcaccggcagtctcttcttcttctacgtgcgcccctac
ttccattcataa

>gi568815590f:47943031_48160825|GENSCAN_predicted_peptide_4|196_aa
MGFHRVGQAGLELLDSTSPGGQLGLPHIPVVSGCSEFLHDGWLPKERKQKLAFLLQGVKV
PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVEC
GPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSK
ENMKLPQPPEGQTYNN

>gi568815590f:47943031_48160825|GENSCAN_predicted_CDS_4|591_bp
atggggtttcaccgtgttggccaggctggtctcgaactcctggactcaacctctccaggt
ggccagttaggacttcctcacatcccggtggtgtcagggtgttcagaattcttacatgat
ggttggcttccaaaagaacgaaagcagaagttagcattcctcttacaaggagttaaagtt
cctcgtaattttcgcttgttggaagaacttgaagaaggacaaaaaggagtaggcgacggt
acagttagctggggccttgaagatgatgaagatatgacacttacaaggtggacaggcatg
attattgggccaccaaggacaaattatgaaaacagaatatatagcctgaaagtagaatgt
ggacctaaatacccagaagctcctccgtcagttagatttgtaacaaaaattaatatgaac
ggaataaataattccagtgggatggtggatgcccggagcataccagtgttagcaaaatgg
caaaattcatatagcattaaagttgtacttcaagagctaagacgtctaatgatgtccaaa
gaaaatatgaagcttccacagccaccagaaggacaaacatacaacaattaa

>gi568815590f:47943031_48160825|GENSCAN_predicted_peptide_5|422_aa
MEDKGRGRGGPVGVAQSTMPTTEETSNTQASRVAQQSTSARLSSATLGPARQAHAESVNG
RRKGGGQRATGPFFQPPLFSVPPTCDSNRHRALYTTTPEMVNQIPGAQKPGWLHLAACLP
PTDSELQGKGVVLKVFWRTHVVLKLPCIRGRGKASYNTDLQISGFEGYKDAAGLRATMPC
PRLLKPTLACWCSDPCRGQQWLERAAGSGCTRELTASYDLGADSEDRTEHLGSHIQPQKS
PSCVPRRPVLLATVTHLPAEEAPLMADITTQVIITPQLGIWTLLPADVAASAHGSVNPSL
SAALRVTLLSVSDTIGGASDTSKEDLSSPYMVTLETERSIFLVGRTNQQGMCQYLGPISY
LFPMDLILMACCWYQSNCAQPEMHPSGPLRQDVQGRPLSSVGASRITNIQKHICSPLTTG
RN

>gi568815590f:47943031_48160825|GENSCAN_predicted_CDS_5|1269_bp
atggaggacaaaggaaggggccgcggcggccctgtgggagtggcacagagcaccatgccc
accacagaagagacatccaacacccaggcaagcagagtggctcagcagtcgacatcagcg
cgtctgtcatcagccaccttggggccggcacggcaggcacatgcagagagtgtcaacggt
agaaggaaaggtggaggccaaagggccacagggccattcttccaaccaccgctgttcagt
gtgccacccacttgtgacagcaaccgacacagggccctgtacaccaccacgccagagatg
gtcaaccagatccctggggcacagaagccaggctggctccacctcgccgcatgtcttccg
ccaacagactcagaactacaagggaagggagtcgtactcaaggtcttttggcgaacacac
gtggttcttaaactgccatgcatcaggggcaggggcaaggcttcttacaacacagatctg
cagatctccgggtttgagggttacaaggatgctgctggtctcagggccacaatgccctgc
ccacggctacttaagcccaccctggcctgctggtgctcagatccttgcaggggacagcag
tggttagagcgtgctgctggttctgggtgcacccgggagctcaccgcatcctatgacctg
ggagcggattcagaggacaggacagaacacttggggtcccacatccagccacagaagagc
ccctcctgcgttccacgcaggcctgtccttcttgctactgtcacacacttgccagcagaa
gaggcccctctaatggccgacatcaccacccaggttatcattacccctcagctgggcatc
tggaccctcctgcctgccgatgtggctgccagcgcccatggcagtgtgaaccccagtctg
tctgcagccctgcgggtgaccctcctgtctgtcagtgacactattggtggtgcatctgac
acatccaaagaggacctgtctagcccctacatggttaccctggagactgaaaggtctata
tttctggtgggccgcaccaaccagcagggcatgtgccaatacctgggccccataagttac
ctctttccaatggacctcatcttaatggcctgctgctggtaccaaagcaattgtgcccaa
cctgagatgcatccatcagggcccctgcggcaagacgtgcaggggcgtcctctcagcagt
gtgggggcatcaagaatcacaaacatccagaagcatatctgttcacctttgaccacgggc
agaaattaa

>gi568815590f:47943031_48160825|GENSCAN_predicted_peptide_6|323_aa
MCHEVGPKGRRQELSDHIAWEILHIIAFCGDSTCSSVTLSKSYGHGHRQHESNTTYPAYL
AVQSLSIVYPEHKSRSCMRALHIGSFDATTCADASHREGQIKEETCRPGDVAQLSMNKGA
FSITLSQVAQSLVYTGAHGETSVAASNSLHLPRFALHLFAQIFWSPYQGGTYDEMANLLS
LLKRQQCMESSCFESLSLLPQLFLELPAVTGSCDNSSPAQKNEDVYPHKRFYTIVHGSLI
CDSQKLETTQMSYGRPHPDAAADTLIFSIHRNKVLCRQKHTASRTLPIFLQDCLQKHMNM
LPLRFINVHIERNSNDLPEMLNG

>gi568815590f:47943031_48160825|GENSCAN_predicted_CDS_6|972_bp
atgtgtcatgaagtgggcccaaaaggaaggcgacaagagctcagcgaccacatagcctgg
gaaatactgcatattatagccttctgtggagattccacctgcagctccgtgaccttgagc
aagtcatatggccatggccaccgacaacacgagagcaacaccacctaccctgcctatctg
gctgtacagagtctctccatagtttacccagagcacaaatctcgaagctgcatgagagca
ttacacattggcagttttgatgccacaacctgtgctgatgcttcacaccgagaaggacag
atcaaagaagaaacatgccggccgggtgatgtggcccaactttccatgaataaaggagct
ttctctattacactgagtcaagtagctcagagcttggtttacaccggagctcatggagag
actagtgttgctgccagcaatagcctccaccttcctagatttgccctacatttgtttgcg
cagattttctggtcaccatatcagggaggcacatatgatgaaatggcaaaccttctcagc
ttactgaagcggcagcagtgcatggaatcctcatgctttgaatctctctcacttctgccg
cagctctttcttgagctccctgctgttacgggctcctgtgataacagtagccccgcccag
aaaaatgaagatgtatacccacacaaaagattctacacaattgttcatggtagccttatt
tgtgatagccaaaaactagaaacaactcaaatgtcctacggcaggccacatcctgacgca
gctgctgacaccctcatattcagcatccaccgaaataaggttctgtgccgccagaaacat
acagcttcccgaaccctgcctattttccttcaagactgtcttcagaaacacatgaatatg
cttcctctgcgctttattaatgttcatattgagagaaatagcaacgacctgccagagatg
ctaaatgggtga