GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:58:25

Sequence gi568815597r:52672197_52872648 : 200452 bp : 43.18% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2433   2490   58  2  1  114  115   -30 0.764   3.86
 1.02 Intr +   4122   4190   69  1  0   83  106    -1 0.461   0.35
 1.03 Term +   4265   4434  170  0  2   67   46    68 0.396  -1.46
 1.04 PlyA +   4936   4941    6                               1.05

 2.04 PlyA -   5691   5686    6                               1.05
 2.03 Term -  15972  15524  449  1  2  122   35   369 0.840  30.38
 2.02 Intr -  20671  20531  141  2  0   98  116   220 0.989  26.12
 2.01 Init -  26130  26025  106  0  1  102  101   196 0.764  22.68
 2.00 Prom -  41355  41316   40                              -3.86

 3.03 PlyA -  43213  43208    6                               1.05
 3.02 Term -  55092  54987  106  2  1   67   49   166 0.800   8.48
 3.01 Init -  84416  84319   98  2  2   77  113    43 0.681   5.48
 3.00 Prom -  88887  88848   40                              -4.96

 4.00 Prom +  92271  92310   40                              -4.96
 4.01 Init +  93494  93542   49  1  1   65   56    30 0.231  -3.38
 4.02 Intr +  98824  99578  755  2  2  116   72   551 0.028  47.48
 4.03 Intr + 107657 107797  141  1  0   62  116    73 0.218   8.05
 4.04 Intr + 112681 112857  177  0  0   55  115    64 0.135   5.92
 4.05 Intr + 124538 124588   51  1  0   91  110    32 0.961   4.80
 4.06 Intr + 129623 129784  162  1  0   98   50    33 0.585   0.67
 4.07 Intr + 129896 129943   48  1  0   98   91     5 0.593   0.68
 4.08 Intr + 141340 141481  142  0  1  121   51    55 0.596   5.03
 4.09 Term + 149243 149433  191  0  2  114   44    87 0.555   4.51
 4.10 PlyA + 151170 151175    6                               1.05

 5.02 PlyA - 151293 151288    6                               1.05
 5.01 Sngl - 171177 170467  711  0  0   51   41   181 0.512   5.95
 5.00 Prom - 183564 183525   40                              -1.16


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  98824  99590  767  2  2  116   42   541 0.920  45.88
S.002 Sngl - 100452 100108  345  0  0  101   37   187 0.912  10.94
S.003 Intr + 124096 124195  100  1  1  131   77    31 0.879   6.41


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:52672197_52872648|GENSCAN_predicted_peptide_1|98_aa
MPSLSSIFSMTCLAQLLAHEAGSLAEGAQAPTQLCRIFTVTLGCSPLQEAPCTQWAVNEC
CCYYTTPGQLQGQSLMPLMSGVHWGLLEPDRTPSSWGE

>gi568815597r:52672197_52872648|GENSCAN_predicted_CDS_1|297_bp
atgcccagcctatcctccatattttcaatgacgtgtttagcacagctccttgcacacgaa
gcagggtcactggcagagggagcccaggctccaacccagctctgccgcatattcactgtg
actttgggatgttccccacttcaggaggcgccctgcacacagtgggcagttaatgaatgt
tgctgttattacaccaccccagggcagcttcaaggtcaaagcttgatgccactgatgtct
ggagtccactggggcctcctggaacctgatcggacaccgtcatcttggggagagtag

>gi568815597r:52672197_52872648|GENSCAN_predicted_peptide_2|231_aa
MAGMVDFQDEEQVKSFLENMEVECNYHCYHEKDPDGCYRLVDYLEGIRKNFDEAAKVLKF
NCEENQHSDSCYKLGAYYVTGKGGLTQDLKAAARCFLMACEKPGKKSIAACHNVGLLAHD
GQVNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACD
LGHIWACANASRMYKLGDGVDKDEAKAEVLKNRAQQLHKEQQKGVQPLTFG

>gi568815597r:52672197_52872648|GENSCAN_predicted_CDS_2|696_bp
atggccggcatggtggacttccaggatgaggagcaggtcaagtcctttttggagaacatg
gaggtggagtgcaactaccactgctaccacgagaaggacccggacggttgctatcggctg
gtggactatttggaagggatccggaagaattttgatgaggctgccaaggtgttgaagttt
aactgtgaagagaaccagcacagtgatagctgctacaaactgggggcctactatgtgact
ggaaaaggtggtctgacccaggacctgaaagctgccgccaggtgctttttgatggcgtgt
gagaagcctggaaagaagtcaatagcagcatgtcacaacgttggcctcctggcacatgat
ggacaggttaatgaggatggccagcctgacttgggaaaggccagggactactacacaagg
gcctgtgatggtggctatacttccagttgcttcaacctcagtgccatgttcctgcagggt
gccccaggctttcccaaggacatggacctggcatgtaaatactccatgaaagcctgtgac
ctgggtcatatctgggcctgtgccaatgccagtcgcatgtacaagctgggggatggtgtt
gataaggatgaggccaaggccgaggtgctaaaaaatcgagcccagcagctacacaaagaa
cagcagaaaggtgtccaacccttaacatttgggtaa

>gi568815597r:52672197_52872648|GENSCAN_predicted_peptide_3|67_aa
MVRSSRSATSCGNTPGSCRHNVPSCLAEQNFSSSREATVLKLFLLRPLKPVEGNGDSCDG
EPSEDIR

>gi568815597r:52672197_52872648|GENSCAN_predicted_CDS_3|204_bp
atggtccgaagcagtcgatcagccacctcctgtgggaatactccaggttcctgcagacac
aatgttccatcttgtctggctgaacagaacttctcaagctcccgggaagcaacagtcctc
aaattgttcctgcttagacccctgaagcccgtagaaggaaatggggacagctgcgacggc
gaaccgagcgaggacatccgataa

>gi568815597r:52672197_52872648|GENSCAN_predicted_peptide_4|571_aa
MESCNVAQAGLKLLASGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVE
LDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSI
TNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQI
LDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQ
QRPSMQFVGLLATDAGYSEFLTGEGHLKVSGEANETQIAEALKRYSERAFFVREALFHLF
SLTHVMEKTKPEILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLAAGMPVRLLADVTH
LLLKAMEHFPNHQQLSTEQTAQLGTELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNL
TDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFI
DHISSLLHSVEVEVSYFAAGIIAHLISRASRYCSMLIEEGGLQHLYNIKDHEHTDPHVQQ
IAVAILDSLEKHIVRHGRPPPCKKQPQARLN

>gi568815597r:52672197_52872648|GENSCAN_predicted_CDS_4|1716_bp
atggagtcttgcaatgttgcccaggctggtctcaaactcctggcctcgggtctattgaat
gatggaactgtgggtatttttaggggcaaccagatgcgcttaaagcgagcctgcattcgc
aaagcaaagatctctgctgttgctttccggaaagctttctgccaccacaagttagtggaa
cttgatgccacaggtgtgaatgctgatatcacgattacagacattatcagtgggcttggc
agtaacaaatggatccagcagaatctccagtgcctggtgctgaattcattaactctctcc
ctcgaggatccttacgagcgctgcttcagccggctttctggccttcgagctttaagcatc
acgaatgttctcttttacaatgaagacctggctgaagttgcctcattgccaagattagag
agcttggatatttctaacacctcaatcacagacatcactgctctactggcctgcaaagac
cgactcaagtctctaaccatgcaccacttgaaatgtttaaaaatgacaactacccagata
ctggatgtagttcgggaactcaaacatctgaatcatcttgatatctcagatgataaacag
tttacatcagacatagctcttcgcttactagaacaaaaagacatcctacctaaccttgtt
tctctggatgtttctgggagaaagcacgtgacagataaagccgttgaagcctttatacaa
caacgtccaagcatgcaatttgtaggtttgctggctactgatgctggttactctgaattc
ctcacaggcgaaggacatttgaaggtgtctggggaagccaatgaaactcagattgcagaa
gcactgaagcgttacagtgaacgggcattctttgttcgggaagctctatttcatcttttt
agtctgactcatgtgatggaaaaaacaaagccagaaattttaaagcttgtggttactggg
atgagaaaccaccctatgaatttgccagtgcaactggctgcaagcgcctgtgtatttaac
ttaaccaagcaggatcttgctgcagggatgcctgtccgactcctggctgatgtgacccat
ttgctgctcaaagccatggaacattttcccaatcaccagcagctttctacagaacaaact
gcacagcttggtactgagctcttcattgtcaggcaacttcttcaaatagtgaagcagaaa
accaatcaaaattcagtggacactacattgaaatttactttgagtgcactttggaacctc
acagatgaatctccaaccacttgtagacactttattgaaaaccaagggttagaactcttc
atgagggttctagagtctttcccaactgagtcatccattcagcagaaagttctaggactt
ttgaacaatatagctgaagtacaagaattacattctgaattaatgtggaaagattttata
gaccacatcagtagtctcctacacagtgtggaagtggaagtcagttactttgcagctgga
attattgcccatttaatatccagagcttcaaggtattgcagcatgctgattgaagaagga
ggattgcagcatttatacaacatcaaagatcatgaacatactgatccccatgtccaacag
attgctgtggccattctggatagcttagaaaaacacattgtgcgccatgggaggccacct
ccctgtaaaaaacagccccaagccagactaaattga

>gi568815597r:52672197_52872648|GENSCAN_predicted_peptide_5|236_aa
MTAKTPSTTGQAECHALHLRLSSQQPALGRGILRRLAPVSGTGLSPRCLRAQVPRASPGA
EKHPPLRGAQAASPDNAPPQRRLRLEGARHLDRSPARATLPSKCLGSVPGDSPRSPELDV
APRSASPPAPRCSPVPRSSPGHPSERQEGRCSGACGPGARNEPWQPRRRGVKKRAGVEPE
PGSRENQAGGCQDAPTTPARHTELAPRPAGELLKCPARRRARGGRPAADPTPRAAS

>gi568815597r:52672197_52872648|GENSCAN_predicted_CDS_5|711_bp
atgactgcaaaaacaccgtccactacgggccaagccgagtgccatgccctgcacctacgt
ctaagctcacagcagcccgcactggggcgaggaatcctgaggaggctcgccccggtctct
gggactgggctctcgccgcgctgcctcagggcgcaagttccacgcgcttcgccgggcgca
gaaaagcaccccccgctccgcggcgcccaggccgcctcccccgacaacgcacctccgcag
cgacgcctgcgcctggaaggggctcggcatctagaccgcagccccgcgcgggccacactc
cccagcaagtgcctcggcagcgtcccaggagactcgccgcgctcgccggagctggacgtg
gcgccgaggtccgcgtcgccgcccgcaccccggtgctcacctgtaccacgcagcagccca
gggcatccttctgagcgtcaggagggacgatgttccggggcgtgtggcccgggtgcaaga
aatgaaccatggcaaccccggcggcggggcgtcaaaaagagagccggcgtcgagccggag
cccggatcccgcgagaaccaagcgggcggctgccaggacgcgcccaccacgcctgcgagg
cacacggagctagcgccgcgccctgccggcgagcttttgaaatgcccggcgaggcgacgc
gcacgcgggggccggcccgccgcagaccccaccccccgggcggcctcctag