GENSCAN 1.0	Date run:  3-Nov-116	Time: 21:25:18

Sequence gi568815593f:171320407_171556802 : 236396 bp : 47.98% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1282   1403  122  0  2   93   63    58 0.122   3.09
 1.02 Intr +  15965  16079  115  2  1   69  103    87 0.938   8.75
 1.03 Term +  17865  18026  162  2  0   64   47    62 0.408  -2.36
 1.04 PlyA +  19033  19038    6                               1.05

 2.03 PlyA -  19406  19401    6                               1.05
 2.02 Term -  24905  24590  316  1  1    6   36   354 0.842  16.41
 2.01 Init -  25224  24944  281  0  2   97   -7   390 0.002  26.88
 2.00 Prom -  28352  28313   40                              -3.06

 3.00 Prom +  29886  29925   40                              -8.06
 3.01 Init +  32724  32849  126  2  0   50   89    48 0.020   1.31
 3.02 Intr +  45890  46153  264  1  0   64   55   345 0.171  26.51
 3.03 Intr +  46331  46444  114  1  0   39    4   146 0.368   1.94
 3.04 Term +  50904  51071  168  2  0   58   52   161 0.975   7.38
 3.05 PlyA +  53047  53052    6                               1.05

 4.00 Prom +  55447  55486   40                              -5.86
 4.01 Init +  65367  65379   13  2  1  113  103     8 0.504   3.82
 4.02 Intr +  67209  67284   76  1  1   10   59    72 0.289  -4.93
 4.03 Intr +  67527  67648  122  0  2   53   77   116 0.593   7.14
 4.04 Intr +  69645  69724   80  1  2   97   32   116 0.978   6.17
 4.05 Intr +  70899  71018  120  2  0   86  103    79 0.997   9.89
 4.06 Intr +  71300  71393   94  1  1   99   77    -4 0.991  -0.86
 4.07 Intr +  72304  72410  107  2  2   47   80   139 0.991   8.93
 4.08 Intr +  72508  72572   65  0  2   60   89   223 0.996  17.12
 4.09 Intr +  79747  79804   58  1  1   51   87   135 0.999   8.59
 4.10 Intr +  80433  80519   87  2  0   49  106    69 0.964   4.97
 4.11 Intr +  84896  84997  102  1  0  103   87    98 0.999  11.57
 4.12 Intr +  87294  87368   75  2  0   91   78    55 0.835   4.51
 4.13 Intr +  99556  99825  270  0  0   66   69   136 0.012   7.24
 4.14 Intr +  99966 100037   72  2  0  107   98    42 0.012   6.70
 4.15 Term + 100169 100342  174  1  0   63   47    96 0.016   0.76
 4.16 PlyA + 102839 102844    6                               1.05

 5.00 Prom + 108301 108340   40                              -7.26
 5.01 Init + 108956 109214  259  1  1  101   41   224 0.467  16.52
 5.02 Intr + 113067 113185  119  1  2    3   69    35 0.279  -6.72
 5.03 Intr + 115687 115867  181  0  1   94   80   441 0.989  43.34
 5.04 Intr + 128741 128847  107  0  2   47  113   180 0.561  16.33
 5.05 Term + 136133 136399  267  1  0  115   47   508 0.981  44.89
 5.06 PlyA + 137723 137728    6                               1.05

 6.09 PlyA - 138534 138529    6                               1.05
 6.08 Term - 142230 142084  147  0  0   91   42    54 0.306  -1.00
 6.07 Intr - 147040 146896  145  0  1   77   94   102 0.929   9.98
 6.06 Intr - 151422 151362   61  1  1  102   80    78 0.921   6.19
 6.05 Intr - 154211 154091  121  2  1   77    4    73 0.753  -2.13
 6.04 Intr - 154687 154619   69  1  0   52  109    39 0.509   1.78
 6.03 Intr - 157987 157861  127  0  1   51   34   154 0.769   6.98
 6.02 Intr - 163875 163717  159  2  0   85   82    80 0.597   6.20
 6.01 Init - 167263 167208   56  1  2   65   89    62 0.947   4.87
 6.00 Prom - 175978 175939   40                              -6.16

 7.03 PlyA - 176549 176544    6                               1.05
 7.02 Term - 177345 177196  150  0  0  -38   44   357 0.937  16.61
 7.01 Init - 181440 181372   69  0  0   92  106    51 0.991   8.35
 7.00 Prom - 189950 189911   40                              -4.06

 8.05 PlyA - 190972 190967    6                               1.05
 8.04 Term - 199216 198895  322  0  1   84   54   112 0.252   1.69
 8.03 Intr - 213092 212830  263  2  2   15   87   140 0.082   2.89
 8.02 Intr - 214894 214761  134  2  2  109   86   -12 0.171   1.06
 8.01 Init - 216881 216818   64  2  1   83   75    61 0.464   5.61
 8.00 Prom - 219538 219499   40                              -1.56

 9.07 PlyA - 219763 219758    6                               1.05
 9.06 Term - 223483 223403   81  1  0  111   44    35 0.653  -0.91
 9.05 Intr - 224495 224398   98  0  2  106   98     4 0.457   2.93
 9.04 Intr - 225423 225383   41  2  2   92   93    26 0.799   1.37
 9.03 Intr - 231397 231274  124  2  1   89   74    61 0.709   4.44
 9.02 Intr - 234947 234839  109  2  1   58   62    47 0.723  -1.04
 9.01 Init - 235437 235327  111  0  0   46  105    91 0.901   6.81

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  15179  15369  191  1  2   83   29    83 0.906   0.38
S.002 Init -  25224  24941  284  0  2   97   77   392 0.956  35.51
S.003 Init -  99750  99517  234  0  0   40   66   344 0.935  23.54
S.004 Init - 190493 190441   53  2  2   69  103    58 0.805   6.03


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_1|132_aa
PPEGAALDKGPRPFAQFLLKSIGGKGICVSQLRLRFKDQERDTTTSPSHILKGQEAFATL
GASSSIKCFLNQLDLPLSTLTEDMKEKMRMSTVISLRLVTTPRSRDQELSAPFPSSSHGL
QVNKGLASGVIQ

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_1|399_bp
cctccagaaggagctgccttggacaaaggccccaggccttttgcacagttcctgttgaaa
agcataggagggaagggcatctgtgtctctcaattgcgtctaagatttaaagatcaagaa
agggacacaactacatctccctcccacattctgaagggccaggaagcctttgccacgctt
ggtgcttcttcctccatcaaatgctttctgaatcaactggatctgccgctgagcacgctc
actgaagacatgaaagagaaaatgagaatgagcacagtgatctcgttaaggcttgtaaca
accccaaggagcagagaccaagagttgtcagccccatttccaagcagcagccatgggctc
caagtgaacaagggacttgcatctggggttatccagtga

>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_2|198_aa
MSMLGLQKRPAASVLRYGKKKVWLDPNEANEIASANSRQQIRKLIKDGLIICKPVTVHSQ
AQCRKNTLAHRKGRHMGTGKRKGTANAPMPEKVTRYRDSKKINHHMYHSLYLKVKESVFK
DKQILMEHIHKLKADKAGKKLLADQAEACRPKTKEARKQREECLQAKKEGIINTLSKDEE
MKKQKLPLCLYILAFVIT

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_2|597_bp
atgagcatgctcgggcttcagaagaggcctgccgctagtgtcctccgctatggcaagaag
aaggtctggttggaccccaatgaggccaatgaaatcgccagtgccaactcccgacagcag
atccggaagctgatcaaagatgggctgattatctgtaagcctgtgactgtccattcccag
gctcaatgccggaaaaacaccttggcccaccggaagggcaggcacatgggcacgggtaag
cgaaagggtacagccaatgccccaatgccagagaaggtcacaagataccgtgactctaag
aagatcaatcaccacatgtatcatagcctgtacctgaaggtgaaggagagtgtgttcaaa
gacaagcagattctcatggaacatatccacaagctgaaggcagacaaggccggcaagaag
ctcctggctgaccaggctgaggcctgcaggcctaagaccaaggaagcacgaaagcaacgt
gaagagtgcctccaggccaagaaggaggggatcatcaacactttgtcgaaggacgaagag
atgaagaaacaaaagctccccctttgtctgtacatactggcctttgtgattacatag

>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_3|223_aa
MPWVTAEKASALCHRAAHTPGPGPRGPEREHSERRSQQEVAQCRLRTGMRGAFGKPQGTV
ARVHIGQVIMSICTKLQNKEHVIEALHRAKFKFPGRQKIHISKKWGFIKFNANEFEDMVA
EKRLILDGCGRAELSFAAATGATPIAGHFTPGTFINQVQAAFWELRLLLQIQQSKDEWIV
LTMTRIPLGSVLGRGAISRTQTGVDDPGKVLPGPEEGSWTTSP

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_3|672_bp
atgccgtgggttactgcagaaaaagccagtgccctctgccacagagctgcacatacacct
ggcccaggccccagagggcctgaaagagaacattcggagaggcgaagccagcaagaggtg
gcacaatgtaggctccggacaggcatgcgaggtgcctttggaaagccccagggcactgtg
gccagggttcacattggccaagttatcatgtccatctgtaccaagctgcagaacaaggag
catgtgatagaagccctgcacagggccaagttcaagtttcctggccgccagaagatccac
atctcaaagaagtggggcttcatcaagttcaatgccaatgaatttgaggacatggtggct
gagaagcggctcatcctagatggctgtgggcgggctgagctgagctttgctgctgccaca
ggagccactcctattgctggccacttcacccctggaaccttcattaaccaggtccaggca
gccttctgggagctgcgtctgttgctgcaaattcagcaatccaaggatgagtggattgtt
ctcaccatgaccagaattcccctgggatctgtgctcggcagaggtgccatctcccgaacc
cagactggagttgatgatccagggaaggtgcttccgggtcctgaagagggctcctggacc
accagcccctga

>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_4|504_aa
MAHACDSSGGVGPVYECACSVGARGVPGRSACRHPMEDSMDMDMSPLRPQNYLFGNCWGE
LERGRAGPGGGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEG
SPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEE
EEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK
APVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKA
KMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEPLRQPGGRSAREEPRGALMPQGAPRSA
PEQQSLQQQQPARREQQQRRRRRRRRRRRPVPAARSGHVQAGLGAAASLPPSDVFSALRL
HLPVPLTASPSVSRRCLHFLLLCFQVQGAEGRLRVRPAPAGNRPRARGSAAGPEEALAVA
ATVGLGWEEIPQSRRAQPQQYTQL

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_4|1515_bp
atggctcacgcatgcgacagcagcggaggggtggggccagtgtacgagtgcgcgtgctcg
gtgggagcccgcggagtacctggaaggagtgcgtgccgccacccgatggaagattcgatg
gacatggacatgagccccctgaggccccagaactatcttttcggtaactgctggggggag
ctggagcgaggccgagcggggcctggtggcggttgtgaactaaaggccgacaaagattat
cactttaaggtggataatgatgaaaatgagcaccagttatctttaagaacggtcagttta
ggggctggtgcaaaggatgagttgcacattgttgaagcagaggcaatgaattacgaaggc
agtccaattaaagtaacactggcaactttgaaaatgtctgtacagccaacggtttccctt
gggggctttgaaataacaccaccagtggtcttaaggttgaagtgtggttcagggccagtg
catattagtggacagcacttagtagctgtggaggaagatgcagagtcagaagatgaagag
gaggaggatgtgaaactcttaagtatatctggaaagcggtctgcccctggaggtggtagc
aaggttccacagaaaaaagtaaaacttgctgctgatgaagatgatgacgatgatgatgaa
gaggatgatgatgaagatgatgatgatgatgattttgatgatgaggaagctgaagaaaaa
gcgccagtgaagaaatctatacgagatactccagccaaaaatgcacaaaagtcaaatcag
aatggaaaagactcaaaaccatcatcaacaccaagatcaaaaggacaagaatccttcaag
aaacaggaaaaaactcctaaaacaccaaaaggacctagttctgtagaagacattaaagca
aaaatgcaagcaagtatagaaaaaggtggttctcttcccaaagtggaagccaaattcatc
aattatgtgaagaattgcttccggatgactgaccaagagcccctgcgccagcccggaggg
cgcagcgctcgggaggagccgcgcggggcgctgatgccgcagggcgcgccgcggagcgcc
ccggagcagcagagtctgcagcagcagcagccggcgaggagggagcagcagcagcggcgg
cggcggcggcggcggcggcggaggcgcccggtcccggccgcgcggagcggacatgtgcag
gctgggctaggagccgccgcctccctcccgcccagcgatgtattcagcgccctccgcctg
cacttgcctgtcccactgaccgcttctccatctgtttcccgcaggtgtttacacttcctg
ctgctgtgcttccaggtacagggcgcggaagggcggctccgcgtgcgccctgcgccggcg
gggaaccggccaagggcaaggggctctgccgcggggcccgaggaggcgctggctgtcgcg
gccactgtcggcctcggctgggaggagatcccgcagagccggcgggctcagccgcaacaa
tatacccagctctaa

>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_5|310_aa
MGPGMGASAQPVGANVSFTLNDSNPESVPWARVQEELGELRFQVERVADFIGNPHWRGVK
VSSLNPEFGEALKALAGPMLLLLEEPGRSKAMGGESSGQMPTRCGPQEHWSSSVPEQQDV
EGGGTQVLVAEENVDFRIHVENQTRARDDVSRKQLRLYQLYSRTSGKHIQVLGRRISARG
EDGDKYAQLLVETDTFGSQVRIKGKETEFYLCMNRKGKLVGKPDGTSKECVFIEKVLENN
YTALMSAKYSGWYVGFTKKGRPRKGPKTRENQQDVHFMKRYPKGQPELQKPFKYTTVTKR
SRRIRPTHPA

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_5|933_bp
atgggccctggcatgggggcaagtgcccagccagtgggagccaacgtgagcttcactctc
aatgacagtaatccagagagcgtcccttgggccagagtccaggaagagttaggggagctg
cgttttcaggtggagagagtggctgactttatcgggaacccccactggagaggagtgaag
gtctccagtttgaatccagagtttggagaagctctgaaagccttggctggcccgatgctg
ctgctgctggaggagccaggaaggtcaaaggccatgggtggggagtcttccggacaaatg
cccaccaggtgtgggcctcaggagcactggagttcttctgtccctgagcagcaggatgtg
gaaggaggcgggacccaggtgctggttgccgaggagaacgtggacttccgcatccacgtg
gagaaccagacgcgggctcgggacgatgtgagccgtaagcagctgcggctgtaccagctc
tacagccggaccagtgggaaacacatccaggtcctgggccgcaggatcagtgcccgcggc
gaggatggggacaagtatgcccagctcctagtggagacagacaccttcggtagtcaagtc
cggatcaagggcaaggagacggaattctacctgtgcatgaaccgcaaaggcaagctcgtg
gggaagcccgatggcaccagcaaggagtgtgtgttcatcgagaaggttctggagaacaac
tacacggccctgatgtcggctaagtactccggctggtacgtgggcttcaccaagaagggg
cggccgcggaagggccccaagacccgggagaaccagcaggacgtgcatttcatgaagcgc
taccccaaggggcagccggagcttcagaagcccttcaagtacacgacggtgaccaagagg
tcccgtcggatccggcccacacaccctgcctag

>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_6|294_aa
MDPCGNKRLQLMEAATTARHTLTTILPVHFTDGKTEAHRGKGALLRSHRTSKAERMPAPE
LQVQCSLLHTTSHYEIQASLESSARFPYWRSANKQEKDVMEDCVEHFVGWPRSHPAGKME
GKTGQKKTRDEFAVVVQASSAENIQRCKHDDFIKVRALGDTCAGDGSPSNRGNSDLGGTL
ERTPVEEEEPLKRNEGAGMFGSVPGLSPLDASGSPPAPSCDNWGVGDNQRCLHALPKWPW
GTKSPQSWKPQPGSQAVLGQQGRALPPSGPQFGGLMFVTDLQANCMVGEQPSHL

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_6|885_bp
atggacccatgtggcaacaagagactgcagctgatggaagctgccaccaccgccagacac
accctcactaccatcctcccagtccattttacggatggaaaaaccgaggcccacagaggt
aaaggcgctctcctgcggtcacacaggacatccaaggcagaacgcatgccagcacctgag
ctccaggtccagtgctctctgctccacactacaagtcattatgagatccaggcctccttg
gagtcttctgctagattcccctactggaggtcggccaacaagcaagagaaggacgtcatg
gaggactgcgtggaacattttgtgggctggcccagaagtcaccctgctggaaagatggaa
ggcaagacagggcaaaagaagactagagatgagtttgcggtggtggtccaggcatcatct
gcagagaatattcaaagatgtaaacatgatgatttcatcaaggtccgcgcgttaggggac
acatgtgcaggcgatggcagcccatcaaaccgtggaaattctgacctaggaggtacattg
gagaggacaccggttgaagaagaggagcccctcaagaggaatgaaggggccgggatgttc
ggcagcgtccctggactctctccactagatgccagtggcagtcccccggctcccagttgt
gacaactggggagttggagacaaccaacgttgtctccacgcactgccgaaatggccctgg
ggaacaaaatcgccccagagctggaaacctcagccaggaagccaggccgtcttgggacag
caagggcgagccttgccgccatctggtccccagttcggcggcctaatgtttgtaacagac
ctgcaagctaattgcatggttggggagcagccttcacatctttag

>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_7|72_aa
MNENNNEWKHIREAGKLPIKGQKKKEEEKEGEKEEEEEEEEEEEEEEEEEEEEGEGEGEG
EEEGEEEEEGGT

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_7|219_bp
atgaatgaaaacaacaatgaatggaaacacatcagagaagctggcaaacttcctataaag
ggccagaaaaagaaagaagaagaaaaagaaggggagaaggaggaagaggaagaggaggag
gaggaagaggaagaggaggaagaggaagaagaagaagaaggagaaggagaaggagaagga
gaagaagaaggagaagaagaagaagaaggcggcacttag

>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_8|260_aa
MTHPQGKDIINMDELRALLDGVLNLLNYWSCLIMVQPYNRINTENDVKEACLLTWKVIHN
ILLINKKYKSLYHRYIHTYVHHSTIDSIKDMEPTPTSIVNQIKKMWYIYTMKHYAAIKKE
IMSFAATWIQLEAIILIELMREQKPKYHKLSHEFLLGTLHSLRSPPTASLAIALGRFDTL
TDIPLNVLAPLSWTSSSPVPLLHPESAIRTSHHRNCTTSTIKDPISTFFTGSPLSVSGAR
ELLYCPLRPQTVLKHISLCL

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_8|783_bp
atgacacatccccagggtaaggacatcatcaacatggatgaactcagggctctgttagat
ggagtcctgaatcttctgaattactggtcatgcttaattatggtacaaccatacaataga
ataaacactgaaaatgatgttaaagaagcatgtctattgacatggaaagtcattcacaat
atattgctaattaacaagaaatataaatcattgtaccacagatacattcacacgtatgtt
catcatagcactattgacagtatcaaagacatggaaccaacaccgacatcaatagtgaac
cagataaagaaaatgtggtacatatataccatgaaacactatgcagccataaaaaaggag
atcatgtcctttgcagcaacatggatacagctggaggccattatcctaatcgaattaatg
cgagaacagaaacccaaataccacaagctctcacatgaattcctcttgggcactcttcac
tccctgaggagccccccaactgcatctcttgccattgccctgggtcgctttgacaccctc
acagacatccctctcaatgtcctggcccctctgtcttggacttcctcgtcaccagtgccc
ctcctccaccccgaatcagccatcaggactagtcatcacagaaactgcaccacttccacc
atcaaggacccaatcagtaccttcttcaccggcagccctctctctgtctctggggctcgg
gagctcctgtactgcccgctccgtccccagactgttctcaaacacatctctctctgcctc
tga

>gi568815593f:171320407_171556802|GENSCAN_predicted_peptide_9|187_aa
MNLSVLIEDAKSRFCHYKVAQSTPGNELTLDSGNELEHCSSPGQIQDTSETQRGQMTYPR
SHCEDAVDSDLNTASHHPEEVVQKENVSVCTHDSLQRNLESIDTERQSLIAPQPQAPREL
SHLVPPGPALFPLPALSGITFQINMCAHILLSESVVCGLEGVLTKANSPSSEVTFQVFQE
ASLTCQA

>gi568815593f:171320407_171556802|GENSCAN_predicted_CDS_9|564_bp
atgaatctgtctgttctcattgaggatgcaaaatcaagattttgccactacaaggtggca
caaagtaccccgggcaatgaattgaccctggacagtggcaatgagctcgagcactgttca
tcccctgggcaaattcaggacacgtctgagacccagaggggccaaatgacttacccaaga
tcacattgtgaggacgcagtggactcggatttgaacacagcttcacaccaccctgaggaa
gtggttcagaaagaaaatgtcagtgtttgtactcatgacagtcttcaaagaaatttggaa
agcatagacactgaacggcagtccttaattgccccccaaccccaggccccaagagaactg
agccacctggtgcctccaggacctgccctgttccccttgccagcactttctggaattacc
ttccaaataaacatgtgtgctcacatcctcctttcagaatcagttgtgtgcgggctggag
ggggtcctgactaaagccaactcacccagctcagaggttaccttccaggtcttccaagaa
gcttccctgacctgccaagcctga