Result of FASTA (omim) for pF1KB6986
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6986, 248 aa
  1>>>pF1KB6986 248 - 248 aa - 248 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6489+/-0.000333; mu= 13.4398+/- 0.021
 mean_var=71.2265+/-13.808, 0's: 0 Z-trim(113.5): 27  B-trim: 0 in 0/54
 Lambda= 0.151968
 statistics sampled from 22828 (22854) to 22828 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.268), width:  16
 Scan time:  6.430

The best scores are:                                      opt bits E(85289)
NP_002783 (OMIM: 606607) proteasome subunit alpha  ( 248) 1579 355.1 6.9e-98
NP_002778 (OMIM: 176842) proteasome subunit alpha  ( 234)  548 129.0 7.3e-30
NP_001096137 (OMIM: 176846) proteasome subunit alp ( 261)  528 124.6 1.7e-28
NP_002780 (OMIM: 176846) proteasome subunit alpha  ( 261)  528 124.6 1.7e-28
NP_001317605 (OMIM: 176846) proteasome subunit alp ( 261)  528 124.6 1.7e-28
NP_002781 (OMIM: 176844) proteasome subunit alpha  ( 241)  497 117.8 1.7e-26
NP_002777 (OMIM: 602854) proteasome subunit alpha  ( 263)  466 111.0 2.1e-24
NP_683877 (OMIM: 602854) proteasome subunit alpha  ( 269)  466 111.1 2.1e-24
NP_002782 (OMIM: 602855,608446) proteasome subunit ( 246)  439 105.1 1.2e-22
NP_001317602 (OMIM: 176846) proteasome subunit alp ( 174)  435 104.2 1.6e-22
NP_002779 (OMIM: 176843) proteasome subunit alpha  ( 255)  420 101.0 2.2e-21
NP_687033 (OMIM: 176843) proteasome subunit alpha  ( 248)  399 96.3 5.2e-20
NP_001317604 (OMIM: 176846) proteasome subunit alp ( 230)  393 95.0 1.2e-19
NP_001096138 (OMIM: 176846) proteasome subunit alp ( 190)  358 87.3 2.1e-17
NP_001269163 (OMIM: 602855,608446) proteasome subu ( 227)  354 86.5 4.5e-17
NP_001186703 (OMIM: 176844) proteasome subunit alp ( 183)  312 77.2 2.2e-14
NP_001186701 (OMIM: 176844) proteasome subunit alp ( 183)  312 77.2 2.2e-14
NP_001186702 (OMIM: 176844) proteasome subunit alp ( 183)  312 77.2 2.2e-14
NP_001137409 (OMIM: 602854) proteasome subunit alp ( 130)  263 66.4 2.8e-11
NP_001269162 (OMIM: 602855,608446) proteasome subu ( 167)  249 63.4 2.9e-10
XP_016876957 (OMIM: 602855,608446) PREDICTED: prot ( 167)  249 63.4 2.9e-10
NP_001269161 (OMIM: 602855,608446) proteasome subu ( 167)  249 63.4 2.9e-10
NP_002792 (OMIM: 176847) proteasome subunit beta t ( 273)  187 49.9 5.6e-06
NP_002790 (OMIM: 604030) proteasome subunit beta t ( 277)  159 43.7  0.0004
NP_002788 (OMIM: 600306) proteasome subunit beta t ( 263)  157 43.3 0.00051


>>NP_002783 (OMIM: 606607) proteasome subunit alpha type  (248 aa)
 initn: 1579 init1: 1579 opt: 1579  Z-score: 1878.4  bits: 355.1 E(85289): 6.9e-98
Smith-Waterman score: 1579; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KB6 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENE
              190       200       210       220       230       240

               
pF1KB6 KKKQKKAS
       ::::::::
NP_002 KKKQKKAS
               

>>NP_002778 (OMIM: 176842) proteasome subunit alpha type  (234 aa)
 initn: 491 init1: 352 opt: 548  Z-score: 657.2  bits: 129.0 E(85289): 7.3e-30
Smith-Waterman score: 548; 38.8% identity (72.0% similar) in 232 aa overlap (3-232:6-233)

                  10        20        30        40        50       
pF1KB6    MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDER
            :. ..:.:::.:.: :.:::  ::  :. .::... . :::..:::. . : :::
NP_002 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 TVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQR
       .:.:.  .  .. ....:.  : :....:::   :.. :. ..:. .  ... .::. :.
NP_002 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 YTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT
       ::::.: ::::.: :: :.. .: : :.:.::::.: ::::.:.:..  . . :::: : 
NP_002 YTQSGGVRPFGVSLLICGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY-
              130       140        150       160       170         

       180       190         200       210       220       230     
pF1KB6 DEAIETDDLTIKLVIKALLEVV--QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKE
       .: .: .: .:. .: .: :    :    :::...   . ... :.: :.. :.: :   
NP_002 NEDLELED-AIHTAILTLKESFEGQMTEDNIEVGICN-EAGFRRLTPTEVKDYLAAIA  
      180        190       200       210        220       230      

         240        
pF1KB6 KEENEKKKQKKAS

>>NP_001096137 (OMIM: 176846) proteasome subunit alpha t  (261 aa)
 initn: 544 init1: 295 opt: 528  Z-score: 632.7  bits: 124.6 E(85289): 1.7e-28
Smith-Waterman score: 528; 33.5% identity (71.3% similar) in 251 aa overlap (3-246:5-254)

                 10        20        30        40        50        
pF1KB6   MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERT
           ::   :.:::.:.:.:::::.::. ...: .:. . : :.:..:.... :: ::  
NP_001 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 V-RKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQR
         .::  :....  . ::.:.:: .. :. :.  : . :  ..:.  : ..  . ..:: 
NP_001 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 YTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT
       ::: .:.::::.: : .:.:     .:::.::::.: .:::. :: .. ..  .:...: 
NP_001 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK
              130       140       150       160       170       180

       180       190          200       210          220       230 
pF1KB6 DEAIETDDLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQS---LKILNPEEIEKYVAE
       .  .   . .. :.::.:   ..: . .....:.:.. :...   ...:. .:.:. . .
NP_001 EGEMTLKS-ALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK
               190       200       210       220       230         

             240             
pF1KB6 IEKEKEENEKKKQKKAS     
        :.:. . :..:..:       
NP_001 HEEEEAKAEREKKEKEQKEKDK
     240       250       260 

>>NP_002780 (OMIM: 176846) proteasome subunit alpha type  (261 aa)
 initn: 544 init1: 295 opt: 528  Z-score: 632.7  bits: 124.6 E(85289): 1.7e-28
Smith-Waterman score: 528; 33.5% identity (71.3% similar) in 251 aa overlap (3-246:5-254)

                 10        20        30        40        50        
pF1KB6   MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERT
           ::   :.:::.:.:.:::::.::. ...: .:. . : :.:..:.... :: ::  
NP_002 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 V-RKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQR
         .::  :....  . ::.:.:: .. :. :.  : . :  ..:.  : ..  . ..:: 
NP_002 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 YTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT
       ::: .:.::::.: : .:.:     .:::.::::.: .:::. :: .. ..  .:...: 
NP_002 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK
              130       140       150       160       170       180

       180       190          200       210          220       230 
pF1KB6 DEAIETDDLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQS---LKILNPEEIEKYVAE
       .  .   . .. :.::.:   ..: . .....:.:.. :...   ...:. .:.:. . .
NP_002 EGEMTLKS-ALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK
               190       200       210       220       230         

             240             
pF1KB6 IEKEKEENEKKKQKKAS     
        :.:. . :..:..:       
NP_002 HEEEEAKAEREKKEKEQKEKDK
     240       250       260 

>>NP_001317605 (OMIM: 176846) proteasome subunit alpha t  (261 aa)
 initn: 544 init1: 295 opt: 528  Z-score: 632.7  bits: 124.6 E(85289): 1.7e-28
Smith-Waterman score: 528; 33.5% identity (71.3% similar) in 251 aa overlap (3-246:5-254)

                 10        20        30        40        50        
pF1KB6   MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERT
           ::   :.:::.:.:.:::::.::. ...: .:. . : :.:..:.... :: ::  
NP_001 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 V-RKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQR
         .::  :....  . ::.:.:: .. :. :.  : . :  ..:.  : ..  . ..:: 
NP_001 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 YTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT
       ::: .:.::::.: : .:.:     .:::.::::.: .:::. :: .. ..  .:...: 
NP_001 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK
              130       140       150       160       170       180

       180       190          200       210          220       230 
pF1KB6 DEAIETDDLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQS---LKILNPEEIEKYVAE
       .  .   . .. :.::.:   ..: . .....:.:.. :...   ...:. .:.:. . .
NP_001 EGEMTLKS-ALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK
               190       200       210       220       230         

             240             
pF1KB6 IEKEKEENEKKKQKKAS     
        :.:. . :..:..:       
NP_001 HEEEEAKAEREKKEKEQKEKDK
     240       250       260 

>>NP_002781 (OMIM: 176844) proteasome subunit alpha type  (241 aa)
 initn: 505 init1: 337 opt: 497  Z-score: 596.5  bits: 117.8 E(85289): 1.7e-26
Smith-Waterman score: 506; 37.9% identity (71.7% similar) in 240 aa overlap (3-232:8-241)

                    10        20        30        40        50     
pF1KB6      MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQD
              :::....:::.:.::::::: ::.: ::::.:..  . : :.:::. .. :..
NP_002 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB6 ERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLK
         ...::  .: ..  :..:: :::. .:..:::: :.: .: .. .::: .:. ...: 
NP_002 PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA
               70        80        90       100       110       120

         120            130       140       150       160          
pF1KB6 QRYTQSNG-----RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG---RGAKS
        .. . ..      ::::.. :. : :  : :.:.. :::::.    : :::   .::.:
NP_002 LQFGEEDADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQS
              130       140       150        160       170         

        170        180       190       200       210       220     
pF1KB6 -VREFLEKNYT-DEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEI
        ..:  .:..:  :::... . .: :..  :...     :::::...  :...... ::.
NP_002 SLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNAT-----NIELATVQPGQNFHMFTKEEL
     180       190       200       210            220       230    

         230       240        
pF1KB6 EKYVAEIEKEKEENEKKKQKKAS
       :. . .:                
NP_002 EEVIKDI                
          240                 

>>NP_002777 (OMIM: 602854) proteasome subunit alpha type  (263 aa)
 initn: 425 init1: 206 opt: 466  Z-score: 559.2  bits: 111.0 E(85289): 2.1e-24
Smith-Waterman score: 466; 32.8% identity (68.8% similar) in 247 aa overlap (3-244:6-248)

                  10        20        30        40        50       
pF1KB6    MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDER
            ::  .::.::.:.. :.:::.::::.::..::....  .:: . :.. ..:  ..
NP_002 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 TVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQR
         .::  .:... ...::::::::.. :  : :: . :.. . :. :  ..  :.:  : 
NP_002 --KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI
                 70        80        90       100       110        

       120       130       140       150       160       170       
pF1KB6 YTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT
        ::  ::::.:.. ::.:.: :  :...:: ::..:   .: .::  ..:.: .::....
NP_002 PTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMS
      120       130        140       150       160       170       

       180        190       200           210       220       230  
pF1KB6 DEAIETD-DLTIKLVIKALLEVVQS----GGKNIELAVMRRDQSLKILNPEEIEKYVAEI
        : .: . .  .:  ..:: :.. .      ::. .... .:  . : . ...  ..  .
NP_002 -EFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL
        180       190       200       210       220       230      

            240                   
pF1KB6 EKEKEENEKKKQKKAS           
       :.. ... .  :               
NP_002 EERPQRKAQPAQPADEPAEKADEPMEH
        240       250       260   

>>NP_683877 (OMIM: 602854) proteasome subunit alpha type  (269 aa)
 initn: 425 init1: 206 opt: 466  Z-score: 559.1  bits: 111.1 E(85289): 2.1e-24
Smith-Waterman score: 466; 32.8% identity (68.8% similar) in 247 aa overlap (3-244:12-254)

                        10        20        30        40        50 
pF1KB6          MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVA
                  ::  .::.::.:.. :.:::.::::.::..::....  .:: . :.. .
NP_683 MQLSKVKFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQS
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KB6 KLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYI
       .:  ..  .::  .:... ...::::::::.. :  : :: . :.. . :. :  ..  :
NP_683 ELAAHQ--KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI
                 70        80        90       100       110        

             120       130       140       150       160       170 
pF1KB6 ASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREF
       .:  :  ::  ::::.:.. ::.:.: :  :...:: ::..:   .: .::  ..:.: .
NP_683 GSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTY
      120       130       140        150       160       170       

             180        190       200           210       220      
pF1KB6 LEKNYTDEAIETD-DLTIKLVIKALLEVVQS----GGKNIELAVMRRDQSLKILNPEEIE
       ::.... : .: . .  .:  ..:: :.. .      ::. .... .:  . : . ... 
NP_683 LERHMS-EFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVS
       180        190       200       210       220       230      

        230       240                   
pF1KB6 KYVAEIEKEKEENEKKKQKKAS           
        ..  .:.. ... .  :               
NP_683 PFLEGLEERPQRKAQPAQPADEPAEKADEPMEH
        240       250       260         

>>NP_002782 (OMIM: 602855,608446) proteasome subunit alp  (246 aa)
 initn: 410 init1: 308 opt: 439  Z-score: 527.7  bits: 105.1 E(85289): 1.2e-22
Smith-Waterman score: 439; 34.5% identity (66.0% similar) in 238 aa overlap (3-235:9-246)

                     10        20        30         40        50   
pF1KB6       MSYDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKL
               .:: ::.:::.:.:.::::: .:...:. :.:.:::.: .:. ..::   ::
NP_002 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB6 QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIAS
        :  :: ..  . .:.  ...:.:::.:  ..::: :  . .      . :... . ::.
NP_002 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB6 LKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE
       ..: :::.   ::.:   ...:.: .  :..:. ::.: : ..::.: :        :::
NP_002 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
              130       140       150       160       170       180

           180       190       200         210        220          
pF1KB6 KNYTDEAIETDDLTIKLVIKALLEVVQSGGK--NIELAVMR-RDQSLKILNPEEIEKY-V
       :.   .   : . :.. .:  :  :..   :  .::..:.  .. ...::.  ::. . :
NP_002 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
              190       200       210       220       230       240

     230       240        
pF1KB6 AEIEKEKEENEKKKQKKAS
       :  :..             
NP_002 ALAERD             
                          

>>NP_001317602 (OMIM: 176846) proteasome subunit alpha t  (174 aa)
 initn: 439 init1: 280 opt: 435  Z-score: 525.2  bits: 104.2 E(85289): 1.6e-22
Smith-Waterman score: 435; 41.0% identity (72.0% similar) in 161 aa overlap (3-162:5-165)

                 10        20        30        40        50        
pF1KB6   MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERT
           ::   :.:::.:.:.:::::.::. ...: .:. . : :.:..:.... :: ::  
NP_001 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 V-RKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQR
         .::  :....  . ::.:.:: .. :. :.  : . :  ..:.  : ..  . ..:: 
NP_001 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 YTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT
       ::: .:.::::.: : .:.:     .:::.::::.: .:::. ::               
NP_001 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAWKLQH      
              130       140       150       160       170          

       180       190       200       210       220       230       
pF1KB6 DEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKE




248 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:24:39 2016 done: Fri Nov  4 10:24:40 2016
 Total Scan time:  6.430 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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