Result of FASTA (ccds) for pF1KE4538
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4538, 620 aa
  1>>>pF1KE4538     620 - 620 aa - 620 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9610+/-0.00106; mu= 2.9459+/- 0.063
 mean_var=197.8535+/-41.071, 0's: 0 Z-trim(109.4): 53  B-trim: 69 in 1/52
 Lambda= 0.091181
 statistics sampled from 10953 (10991) to 10953 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.329), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(33420)
CCDS32334.1 PRC1 gene_id:9055|Hs109|chr15          ( 620) 4020 541.8  1e-153
CCDS45352.1 PRC1 gene_id:9055|Hs109|chr15          ( 606) 3810 514.2  2e-145
CCDS45353.2 PRC1 gene_id:9055|Hs109|chr15          ( 525) 3064 416.0 6.3e-116


>>CCDS32334.1 PRC1 gene_id:9055|Hs109|chr15               (620 aa)
 initn: 4020 init1: 4020 opt: 4020  Z-score: 2873.6  bits: 541.8 E(33420): 1e-153
Smith-Waterman score: 4020; 99.8% identity (99.8% similar) in 620 aa overlap (1-620:1-620)

               10        20        30        40        50        60
pF1KE4 MRRSEVLAEESIVCLQKALNHLREIWELIGIPEDQRLQRTEVVKKHIKELLDMMIAEEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRRSEVLAEESIVCLQKALNHLREIWELIGIPEDQRLQRTEVVKKHIKELLDMMIAEEES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMRKQKKERKQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMRKQKKERKQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LKLLQEQDQELCEILCMPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LKLLQEQDQELCEILCMPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 IILCMEELDHTPDTSFERDVVCEDEDAFCLSLENIATLQKLLRQLEMQKSQNEAVCEGLR
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IILCMEALDHTPDTSFERDVVCEDEDAFCLSLENIATLQKLLRQLEMQKSQNEAVCEGLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 TQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQLEVDRLEELKMQNMKKVIEAIRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQLEVDRLEELKMQNMKKVIEAIRVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LVQYWDQCFYSQEQRQAFAPFCAEDYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVQYWDQCFYSQEQRQAFAPFCAEDYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 TWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHSKA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 FMVNGQKFMEYVAEQWEMHRLEKERAKQERQLKNKKQTETEMLYGSAPRTPSKRRGLAPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FMVNGQKFMEYVAEQWEMHRLEKERAKQERQLKNKKQTETEMLYGSAPRTPSKRRGLAPN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 TPGKARKLNTTTMSNATANSSIRPIFGGTVYHSPVSRLPPSGSKPVAASTCSGKKTPRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TPGKARKLNTTTMSNATANSSIRPIFGGTVYHSPVSRLPPSGSKPVAASTCSGKKTPRTG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 RHGANKENLELNGSILSGGYPGSAPLQRNFSINSVASTYSEFAKDPSLSDSSTVGLQREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RHGANKENLELNGSILSGGYPGSAPLQRNFSINSVASTYSEFAKDPSLSDSSTVGLQREL
              550       560       570       580       590       600

              610       620
pF1KE4 SKASKSDATSGILNSTNIQS
       ::::::::::::::::::::
CCDS32 SKASKSDATSGILNSTNIQS
              610       620

>>CCDS45352.1 PRC1 gene_id:9055|Hs109|chr15               (606 aa)
 initn: 3849 init1: 3810 opt: 3810  Z-score: 2724.4  bits: 514.2 E(33420): 2e-145
Smith-Waterman score: 3895; 97.6% identity (97.6% similar) in 620 aa overlap (1-620:1-606)

               10        20        30        40        50        60
pF1KE4 MRRSEVLAEESIVCLQKALNHLREIWELIGIPEDQRLQRTEVVKKHIKELLDMMIAEEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRRSEVLAEESIVCLQKALNHLREIWELIGIPEDQRLQRTEVVKKHIKELLDMMIAEEES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMRKQKKERKQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMRKQKKERKQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LKLLQEQDQELCEILCMPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LKLLQEQDQELCEILCMPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 IILCMEELDHTPDTSFERDVVCEDEDAFCLSLENIATLQKLLRQLEMQKSQNEAVCEGLR
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IILCMEALDHTPDTSFERDVVCEDEDAFCLSLENIATLQKLLRQLEMQKSQNEAVCEGLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 TQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQLEVDRLEELKMQNMKKVIEAIRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQLEVDRLEELKMQNMKKVIEAIRVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LVQYWDQCFYSQEQRQAFAPFCAEDYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVQYWDQCFYSQEQRQAFAPFCAEDYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 TWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHSKA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 FMVNGQKFMEYVAEQWEMHRLEKERAKQERQLKNKKQTETEMLYGSAPRTPSKRRGLAPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FMVNGQKFMEYVAEQWEMHRLEKERAKQERQLKNKKQTETEMLYGSAPRTPSKRRGLAPN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 TPGKARKLNTTTMSNATANSSIRPIFGGTVYHSPVSRLPPSGSKPVAASTCSGKKTPRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TPGKARKLNTTTMSNATANSSIRPIFGGTVYHSPVSRLPPSGSKPVAASTCSGKKTPRTG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 RHGANKENLELNGSILSGGYPGSAPLQRNFSINSVASTYSEFAKDPSLSDSSTVGLQREL
       :::::::::::::::::::::::::::::::::::::::::::              :::
CCDS45 RHGANKENLELNGSILSGGYPGSAPLQRNFSINSVASTYSEFA--------------REL
              550       560       570       580                    

              610       620
pF1KE4 SKASKSDATSGILNSTNIQS
       ::::::::::::::::::::
CCDS45 SKASKSDATSGILNSTNIQS
        590       600      

>>CCDS45353.2 PRC1 gene_id:9055|Hs109|chr15               (525 aa)
 initn: 3063 init1: 3063 opt: 3064  Z-score: 2195.0  bits: 416.0 E(33420): 6.3e-116
Smith-Waterman score: 3279; 92.5% identity (92.5% similar) in 557 aa overlap (1-557:1-516)

               10        20        30        40        50        60
pF1KE4 MRRSEVLAEESIVCLQKALNHLREIWELIGIPEDQRLQRTEVVKKHIKELLDMMIAEEES
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS45 MRRSEVLAEESIVCLQKALNHLREIWELIGIPEDQRLQRTEVVKKHIKE-----------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE4 LKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMRKQKKERKQE
                                     ::::::::::::::::::::::::::::::
CCDS45 ------------------------------EGETTILQLEKDLRTQVELMRKQKKERKQE
                                    50        60        70         

              130       140       150       160       170       180
pF1KE4 LKLLQEQDQELCEILCMPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LKLLQEQDQELCEILCMPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQ
      80        90       100       110       120       130         

              190       200       210       220       230       240
pF1KE4 IILCMEELDHTPDTSFERDVVCEDEDAFCLSLENIATLQKLLRQLEMQKSQNEAVCEGLR
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IILCMEALDHTPDTSFERDVVCEDEDAFCLSLENIATLQKLLRQLEMQKSQNEAVCEGLR
     140       150       160       170       180       190         

              250       260       270       280       290       300
pF1KE4 TQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQLEVDRLEELKMQNMKKVIEAIRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQLEVDRLEELKMQNMKKVIEAIRVE
     200       210       220       230       240       250         

              310       320       330       340       350       360
pF1KE4 LVQYWDQCFYSQEQRQAFAPFCAEDYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVQYWDQCFYSQEQRQAFAPFCAEDYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEE
     260       270       280       290       300       310         

              370       380       390       400       410       420
pF1KE4 TWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TWRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHSKA
     320       330       340       350       360       370         

              430       440       450       460       470       480
pF1KE4 FMVNGQKFMEYVAEQWEMHRLEKERAKQERQLKNKKQTETEMLYGSAPRTPSKRRGLAPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FMVNGQKFMEYVAEQWEMHRLEKERAKQERQLKNKKQTETEMLYGSAPRTPSKRRGLAPN
     380       390       400       410       420       430         

              490       500       510       520       530       540
pF1KE4 TPGKARKLNTTTMSNATANSSIRPIFGGTVYHSPVSRLPPSGSKPVAASTCSGKKTPRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TPGKARKLNTTTMSNATANSSIRPIFGGTVYHSPVSRLPPSGSKPVAASTCSGKKTPRTG
     440       450       460       470       480       490         

              550       560       570       580       590       600
pF1KE4 RHGANKENLELNGSILSGGYPGSAPLQRNFSINSVASTYSEFAKDPSLSDSSTVGLQREL
       :::::::::::::::::                                           
CCDS45 RHGANKENLELNGSILSARTFKGFQI                                  
     500       510       520                                       




620 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:26:43 2019 done: Thu Oct 24 21:26:43 2019
 Total Scan time:  1.750 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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