GENSCAN 1.0	Date run:  5-Nov-116	Time: 13:21:43

Sequence gi568815587r:63474948_63698163 : 223216 bp : 44.51% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6761   6893  133  1  1   78   47    67 0.340   1.90
 1.02 Term +   9615   9955  341  1  2   27   36   303 0.475  13.70
 1.03 PlyA +  10520  10525    6                               1.05

 2.03 PlyA -  12119  12114    6                               1.05
 2.02 Term -  13319  13309   11  0  2   94   40    10 0.050  -4.84
 2.01 Init -  16087  15940  148  1  1   85   76   120 0.893  10.94
 2.00 Prom -  22484  22445   40                              -3.56

 3.00 Prom +  27067  27106   40                              -2.86
 3.01 Init +  31512  31580   69  2  0   44  117    61 0.926   5.65
 3.02 Intr +  33606  33694   89  2  2   72  110    91 0.995   8.47
 3.03 Intr +  33831  34044  214  0  1   24   67   241 0.952  14.32
 3.04 Intr +  34831  34950  120  0  0  113  101   175 0.999  21.99
 3.05 Intr +  35516  35554   39  1  0   93   84    40 0.514   2.52
 3.06 Intr +  36132  36158   27  2  0  102  105    10 0.502   2.41
 3.07 Term +  41300  41446  147  1  0  104   55   197 0.813  15.90
 3.08 PlyA +  41803  41808    6                               1.05

 4.00 Prom +  43392  43431   40                              -6.16
 4.01 Init +  50763  51048  286  2  1   86   22   173 0.373   7.75
 4.02 Term +  53993  54006   14  0  2  148   42    11 0.346   0.86
 4.03 PlyA +  54419  54424    6                               1.05

 5.00 Prom +  60224  60263   40                              -4.66
 5.01 Init +  61922  61930    9  1  0   78  123     5 0.570   3.29
 5.02 Intr +  64569  64677  109  2  1   89   80   119 0.994  11.06
 5.03 Intr +  69653  69942  290  0  2   80  110   270 0.615  25.36
 5.04 Term +  71202  71309  108  2  0   88   48    20 0.322  -3.49
 5.05 PlyA +  71488  71493    6                               1.05

 6.06 PlyA -  73619  73614    6                               1.05
 6.05 Term -  78118  78017  102  1  0  130   35   107 0.963   7.88
 6.04 Intr -  83713  83445  269  2  2   75   57   329 0.992  25.75
 6.03 Intr -  85246  85138  109  1  1  131   80   107 0.911  14.06
 6.02 Intr -  87740  87669   72  2  0   74  119    50 0.987   6.30
 6.01 Init -  88377  88369    9  0  0   84  111    11 0.744   2.87
 6.00 Prom -  98236  98197   40                              -3.06

 7.05 PlyA -  98373  98368    6                               1.05
 7.04 Term - 100099  99998  102  1  0  140   36    84 0.897   6.68
 7.03 Intr - 115421 115153  269  0  2   73   96   468 0.705  43.35
 7.02 Intr - 123216 123114  103  0  1  102   71    65 0.754   5.95
 7.01 Init - 132342 132274   69  0  0   78   75   104 0.536   7.16
 7.00 Prom - 142168 142129   40                              -1.56

 8.11 PlyA - 142645 142640    6                               1.05
 8.10 Term - 147720 147652   69  0  0  109   35    22 0.158  -3.06
 8.09 Intr - 156524 156093  432  2  0  117  111   391 0.704  38.14
 8.08 Intr - 158150 158079   72  2  0   60   94    57 0.890   3.10
 8.07 Intr - 161387 161260  128  0  2   79   94    33 0.925   3.40
 8.06 Intr - 168548 168410  139  2  1   81   93    96 0.992   9.44
 8.05 Intr - 169314 169222   93  0  0   80  111    17 0.879   3.36
 8.04 Intr - 177039 176989   51  0  0   67   76    43 0.494   0.10
 8.03 Intr - 177628 177524  105  1  0  109   98    54 0.991   8.91
 8.02 Intr - 183957 183814  144  0  0   51  116    33 0.857   2.88
 8.01 Init - 184297 184091  207  1  0   85  110   210 0.595  21.72
 8.00 Prom - 188921 188882   40                              -4.16

 9.00 Prom + 189427 189466   40                              -9.55
 9.01 Init + 189988 190086   99  0  0   43   41   111 0.584   2.16
 9.02 Intr + 193303 193354   52  0  1   68   89    43 0.860   0.88
 9.03 Term + 195975 196207  233  1  2   29   46   213 0.881   7.84
 9.04 PlyA + 198739 198744    6                               1.05

10.04 PlyA - 201845 201840    6                               1.05
10.03 Term - 206856 206713  144  0  0  117   48   113 0.148   8.11
10.02 Intr - 216932 216769  164  0  2   90   70    92 0.069   7.29
10.01 Init - 218367 218319   49  0  1   94   58    50 0.883   1.71

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 206690 206831  142  1  1  108   90    75 0.824  10.02
S.002 Term - 216932 216637  296  0  2   90   54   144 0.818   6.67


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_1|157_aa
MEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHRMFSLIDTEIAFDKIQHPFMIK
NLNKISIKGTNLKAIKAIYDKPTANIIVIGEKLKAFPQITGKRRGCPLSPHLFDIVLEVL
ARAIRQEKEIKGIQISKKEVKLLLFADMIIDLENPKA

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_1|474_bp
atggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatg
aagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacaccgcatg
ttctcactcatagacacagaaatagcatttgacaagatccagcatccctttatgattaaa
aacctcaacaaaatcagcataaaagggacaaacctcaaggcaataaaagccatctacgac
aaacccacagccaacattatagtgattggggaaaagttgaaagcattcccccagataact
ggaaaaagacgaggatgcccactttcaccacatttattcgacatagtgctagaagtccta
gccagagcaatcagacaagagaaagaaataaagggcatccaaatcagtaaaaaggaagtc
aaactgttgctgtttgctgatatgatcatagacctggaaaaccctaaagcctaa

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_2|52_aa
MGLSPGAEGEYALRLPRIPPPLPKPASRTASTGPKDQPPALRRSAVPHSGNN

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_2|159_bp
atgggcctgagcccgggcgccgagggggagtacgcgctccgcctccctaggattccccca
cccctccccaaacccgcctcgcgaaccgccagtaccgggcccaaggaccagccgcctgcg
ctcagacgttcagctgtgccccactcaggcaacaactga

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_3|234_aa
MSPGEKLDPIPDSFILQPPVFHPVVPYVTTIFGGLHAGKMVMLQGVVPLDAHRFQVDFQC
GCSLCPRPDIAFHFNPRFHTTKPHVICNTLHGGRWQREARWPHLALRRGSSFLILFLFGN
EEVKVSVNGQHFLHFRYRLPLSHVDTLGIFGDILVEAVGFLNINPFVEGSREYPAGHPFL
LMSPRLVLLLFQEGGLKLALNGQGLGATSMNQQALEQLRELRISGSVQLYCVHS

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_3|705_bp
atgtcacctggagaaaaactggacccaattcctgacagcttcattctgcaaccaccagtc
ttccacccggtggttccttatgtcacgacgatttttggaggcctgcatgcaggcaagatg
gtcatgctgcaaggagtggtccctctagatgcacacaggtttcaggtggacttccagtgt
ggctgcagcctgtgtccccggccagatatcgccttccacttcaaccctcgcttccatacc
accaagccccatgtcatctgcaacaccctgcatggtggacgctggcaaagggaggcccgg
tggccccacctggccctgcgaagaggctccagcttcctcatcctctttctcttcgggaat
gaggaagtgaaggtgagtgtgaatggacagcactttctccacttccgctaccggctccca
ctgtctcatgtggacacgctgggtatatttggtgacatcctggtagaggctgttggattc
ctgaacatcaatccatttgtggagggcagcagagagtacccagctggacatcctttcctg
ctgatgagccccaggctggtgctgctcctgttccaggagggagggctgaagctggcgctc
aatgggcaggggctgggggccaccagcatgaaccagcaggccctggagcagctgcgggag
ctccggatcagtggaagtgtccagctctactgtgtccactcctga

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_4|99_aa
MAIRPKVIYRFNAIPIMLPMTFFTELEKTTLKFIRNQKGAHIAKSILSQKNKAGGIMLPD
FKLYYKTTVTKTAWYWYQNRDIDQWNRTEPSEIMPRKCK

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_4|300_bp
atggccatacggcccaaggtaatttatagattcaatgccatccccatcatgctaccaatg
actttcttcacagaattggaaaaaactactttaaagttcatacggaaccaaaaaggagcc
cacatcgccaagtcaatcctaagccaaaagaacaaagccggaggcatcatgctacctgac
ttcaaactatactacaagactacagtaaccaaaacagcatggtactggtaccaaaacaga
gatatagatcaatggaacagaacagagccctcagaaataatgccacgtaagtgtaagtaa

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_5|171_aa
MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPMRVPLIAGEYPGAGSSSVFSV
LSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNC
EHFVTQLRYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_5|516_bp
atggcttcgccacaccaagagcccaaacctggagacctgattgagattttccgccttggc
tatgagcactgggccctgtatataggagatggctacgtgatccatctggctcctccaatg
agagtgcctctgattgcaggtgagtaccccggggctggctcctccagtgtcttctcagtc
ctgagcaacagtgcagaggtgaaacgggagcgcctggaagatgtggtgggaggctgttgc
tatcgggtcaacaacagcttggaccatgagtaccaaccacggcccgtggaggtgatcatc
agttctgcgaaggagatggttggtcagaagatgaagtacagtattgtgagcaggaactgt
gagcactttgtcacccagctgagatatggcaagtcccgctgtaaacaggtggaaaaggcc
aaggttgaagtcggtgtggccacggcgcttggaatcctggttgttgctggatgctctttt
gcgattaggagataccaaaaaaaagcgacagcctga

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_6|186_aa
MALVVNKQSYEVGIITANFMDRRNDILARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHL
APASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRA
EELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAAGLLAAASLVGILLAR
SKRERQ

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_6|561_bp
atggctttggtagttaataagcaatcctatgaagtaggcataattactgccaacttcatg
gataggaggaatgatatactggccagaccaagaccgagacttggagacctgattgagatt
tctcgctttggctatgcacactgggccatctacgtgggagatggctatgtggtccatctg
gctccggcaagtgaaattgctggagctggtgcggccagtgtcctgtctgccctgaccaac
aaagccatagtgaagaaggaactgctgtctgtggtggctgggggagacaactacagggtc
aataacaagcacgatgacagatacacaccactgccttccaacaaaatcgtcaagcgggca
gaggagttggtggggcaggagttgccttattcgctgaccagtgacaactgcgagcacttc
gtgaaccatctgcgctatggcgtctcccgcagtgaccaggtcactggtgcagtcacgaca
gtaggtgtggcagcaggcctgctggctgccgcaagccttgtggggatcctgctggccaga
agcaagcgggaaaggcaataa

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_7|180_aa
MTPSSILMCALCPRLSLGYPLPSPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEV
AGAGAASVMSALTDKAIVKKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQ
EVLYKLTSENCEHFVNELRYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_7|543_bp
atgacccctagctccatactgatgtgtgcgctgtgtccccgcctctcgttgggatacccg
ctgcccagcccagagcctaagcctggagacctgattgagatttttcgccctttctacaga
cactgggccatctatgttggcgatggatatgtggttcatctggcccctccaagtgaggtc
gcaggagctggtgcagccagtgtcatgtccgccctgactgacaaggccatcgtgaagaag
gaattgctgtatgatgtggccgggagtgacaagtaccaggtcaacaacaaacatgatgac
aagtactcgccgctgccctgcagcaaaatcatccagcgggcggaggagctggtggggcag
gaggtgctctacaagctgaccagtgagaactgcgagcactttgtgaatgagctgcgctat
ggagtcgcccgcagtgaccaggtcagagatgtcatcatcgctgcaagcgttgcaggaatg
ggcttggcagccatgagccttattggagtcatgttctcaagaaacaagcgacaaaagcaa
taa

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_8|479_aa
MESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILD
FMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAV
VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQTLMFLVRDWSF
PYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPD
FDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKATAEANNLAAA
ASAKDIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQE
LEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCM
VGLLLIALLTWGYIRYSGQYRELGGAIDFGAAYVLEQIGFLHAPGEDRHQWFQVYVIPL

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_8|1440_bp
atggagagcagcaagcctggtccagtgcaggttgttttggttcagaaagatcaacattcc
tttgagctagatgagaaagccttggccagcatcctcttgcaggaccacatccgagatctt
gatgtggtggtggtttcagtggctggtgccttccgaaagggcaagtccttcattctggat
tttatgctacgatacttatattctcagaaggaaagtggccattcaaattggttgggtgac
ccagaagaaccgttaacaggattttcctggagagggggatctgatccagaaaccactggg
attcaaatctggagtgaagttttcactgtggagaagccaggtgggaagaaggttgcagtt
gttctgatggatacccagggggcatttgacagccagtcaactgtgaaagactgtgctacc
atctttgctctaagcactatgactagttctgttcagatttataatttatctcagaacatt
caagaagatgatcttcaacagctgcagacactgatgtttttggttagagattggagtttc
ccttatgaatatagctatggactccaaggaggaatggcatttttggataagcgtttacag
gtgaaggaacatcaacatgaagaaattcagaatgttcgaaatcacattcactcatgtttc
tccgatgtcacctgctttctcttaccacatccaggactccaggtggccacaagccctgac
tttgatgggaaattaaaagatattgctggtgaattcaaagagcagttacaggcactgata
ccgtatgtattaaacccatctaagttaatggaaaaggagatcaatggctcaaaggtcacc
tgtcggggactactggagtattttaaggccactgctgaagccaacaacttagcagctgca
gcctctgccaaggacatttattataacaacatggaagaggtttgtgggggagagaaacct
tatttgtctccagacattctagaggagaagcactgtgaattcaaacaacttgctctggac
cattttaagaagaccaagaagatgggtgggaaggatttcagctttcgttaccagcaggag
ctggaggaggaaatcaaggaattatatgagaacttctgcaagcacaatggtagcaagaac
gtcttcagcaccttccgaacccctgcagtgctgttcacgggcattgtagctttgtacata
gcctcaggcctcactggcttcataggtcttgaggttgtagcccagttgttcaactgtatg
gttggactactgttaatagcactcctcacctggggctacatcaggtattctggtcaatat
cgtgagctgggcggagctattgattttggtgccgcatatgtgttggagcagataggtttc
ctccatgccccaggggaggacaggcaccagtggttccaggtttatgtcatcccactttaa

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_9|127_aa
MYHNVVEGYNPKDPSGIVRAVDMEDKVTWLQDGSLRFLTDKARENIITGKRRGSAGPKLR
TPPTGTTGPWAAQGQLQPRGGAGGAPGGTRARALTAAAPGRKVRKVPPSLDQLGPKRGPP
TTNSETE

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_9|384_bp
atgtaccataatgtggttgaaggctacaacccaaaggatccaagtggcattgtcagagca
gtagacatggaagataaagttacgtggttacaagatgggtctttaaggtttctaactgac
aaagccagagaaaacatcatcacaggcaagaggcggggctcggcggggccgaagctccgg
acgccgcccacggggaccaccggcccttgggccgcccaggggcagctgcagcccagggga
ggagctggaggagcccccggcggcaccagggcccgagccctgacggcggccgcccccggc
cgaaaagtaaggaaggtgccgccctcgctggaccagctgggcccgaagaggggccccccc
accacaaattcggaaaccgagtga

>gi568815587r:63474948_63698163|GENSCAN_predicted_peptide_10|118_aa
MAFLHVGQAGLELLTSGLYQLLCGKWTEERQRRKQGDQIGGIYNNPRELAWTRVVAMEID
RIGQTLDIFLKGGGSPRALPAQEELQLFVPRAGQAPGLPPPPGADGSAPKDDEEMEWD

>gi568815587r:63474948_63698163|GENSCAN_predicted_CDS_10|357_bp
atggcgtttctccatgttggtcaggctggtctcgaactcctgacctcaggcttataccag
ctgctgtgtggaaaatggactgaagagaggcaaaggagaaagcagggagaccagataggc
ggcatctacaataacccaagagagctagcctggaccagggtggtagcaatggagattgac
agaattggtcagactttggatatctttttgaagggcgggggctccccgcgcgccttaccc
gcacaggaggagctgcagctcttcgtccccagggcggggcaggctcctgggctcccgccg
ccgccgggcgcggacggctcggctccgaaggacgacgaggagatggaatgggactga