Result of FASTA (ccds) for pF1KB5454
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5454, 514 aa
  1>>>pF1KB5454 514 - 514 aa - 514 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6093+/-0.000938; mu= 17.2136+/- 0.057
 mean_var=72.0203+/-14.564, 0's: 0 Z-trim(105.3): 24  B-trim: 262 in 1/49
 Lambda= 0.151129
 statistics sampled from 8353 (8365) to 8353 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.257), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS795.1 SARS gene_id:6301|Hs108|chr1             ( 514) 3406 752.0 3.5e-217
CCDS81356.1 SARS gene_id:6301|Hs108|chr1           ( 536) 2787 617.1 1.6e-176
CCDS33017.1 SARS2 gene_id:54938|Hs108|chr19        ( 518)  590 138.1 2.4e-32
CCDS54265.1 SARS2 gene_id:54938|Hs108|chr19        ( 520)  590 138.1 2.4e-32


>>CCDS795.1 SARS gene_id:6301|Hs108|chr1                  (514 aa)
 initn: 3406 init1: 3406 opt: 3406  Z-score: 4012.5  bits: 752.0 E(32554): 3.5e-217
Smith-Waterman score: 3406; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB5 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP
              430       440       450       460       470       480

              490       500       510    
pF1KB5 SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
       ::::::::::::::::::::::::::::::::::
CCDS79 SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
              490       500       510    

>>CCDS81356.1 SARS gene_id:6301|Hs108|chr1                (536 aa)
 initn: 2787 init1: 2787 opt: 2787  Z-score: 3282.8  bits: 617.1 E(32554): 1.6e-176
Smith-Waterman score: 3352; 95.9% identity (95.9% similar) in 536 aa overlap (1-514:1-536)

               10        20        30        40        50        60
pF1KB5 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KB5 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS81 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKR
              370       380       390       400       410       420

                          420       430       440       450        
pF1KB5 ---------------------VEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKE
                            :::::::::::::::::::::::::::::::::::::::
CCDS81 KNNLHLSTQNKLEASLFSPKKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKE
              430       440       450       460       470       480

      460       470       480       490       500       510    
pF1KB5 FMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
              490       500       510       520       530      

>>CCDS33017.1 SARS2 gene_id:54938|Hs108|chr19             (518 aa)
 initn: 433 init1: 287 opt: 590  Z-score: 694.2  bits: 138.1 E(32554): 2.4e-32
Smith-Waterman score: 596; 30.1% identity (66.4% similar) in 342 aa overlap (123-460:158-485)

            100       110       120       130       140       150  
pF1KB5 DALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVD
                                     .:: . . .  .. :  ::.::.. ::. .
CCDS33 EVQQDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDVPVG-DES-Q
       130       140       150       160       170       180       

            160         170       180       190       200       210
pF1KB5 NKVERIWGDCTVR--KKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQY
        .: .. ::  :   .  .:...   .: .. .. . :.: :.:.:.:. ..:...:...
CCDS33 ARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNF
         190       200       210       220       230       240     

              220       230       240        250       260         
pF1KB5 ALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDE-ELYKVIGKGSEKSDDNSYDEKYLI
       ..  :  ::. :. .: ..:  :..  ..  . .  ..:..        :   . .  : 
CCDS33 TFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI--------DPARFKDLNLA
         250       260       270       280               290       

     270       280       290       300       310       320         
pF1KB5 ATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVY
       .:.:  .:.   :. .  .:::....  :::.: :... :.. ::..:::.: :.:.:  
CCDS33 GTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNT-GQEPRGLYRVHHFTKVEMFGV
       300       310       320       330        340       350      

     330       340       350       360       370       380         
pF1KB5 SSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAF
       ..:  ..: ...::...   :.   ::. ...... .  :.  : .:.:.:::.:: : :
CCDS33 TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF
        360       370       380       390       400       410      

     390       400       410       420       430       440         
pF1KB5 RELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKG
        :..: :::::.:.:::.: . ::.    ...:.: .::: ::. : . :.::. : . :
CCDS33 GEVTSASNCTDFQSRRLHIMF-QTEA--GELQFAHTVNATACAVPRLLIALLESNQQKDG
        420       430        440         450       460       470   

      450       460       470       480       490       500        
pF1KB5 -ITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN
        . ::  :. ..                                                
CCDS33 SVLVPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS               
           480       490       500       510                       

>>CCDS54265.1 SARS2 gene_id:54938|Hs108|chr19             (520 aa)
 initn: 433 init1: 287 opt: 590  Z-score: 694.2  bits: 138.1 E(32554): 2.4e-32
Smith-Waterman score: 596; 30.1% identity (66.4% similar) in 342 aa overlap (123-460:160-487)

            100       110       120       130       140       150  
pF1KB5 DALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVD
                                     .:: . . .  .. :  ::.::.. ::. .
CCDS54 QQVRLDPGAGSIFGPTFLPFPGQLSLLVEAQLEEQFYLQALKLPNQTHPDVPVG-DES-Q
     130       140       150       160       170       180         

            160         170       180       190       200       210
pF1KB5 NKVERIWGDCTVR--KKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQY
        .: .. ::  :   .  .:...   .: .. .. . :.: :.:.:.:. ..:...:...
CCDS54 ARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNF
       190       200       210       220       230       240       

              220       230       240        250       260         
pF1KB5 ALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDE-ELYKVIGKGSEKSDDNSYDEKYLI
       ..  :  ::. :. .: ..:  :..  ..  . .  ..:..        :   . .  : 
CCDS54 TFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI--------DPARFKDLNLA
       250       260       270       280               290         

     270       280       290       300       310       320         
pF1KB5 ATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVY
       .:.:  .:.   :. .  .:::....  :::.: :... :.. ::..:::.: :.:.:  
CCDS54 GTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNT-GQEPRGLYRVHHFTKVEMFGV
     300       310       320       330        340       350        

     330       340       350       360       370       380         
pF1KB5 SSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAF
       ..:  ..: ...::...   :.   ::. ...... .  :.  : .:.:.:::.:: : :
CCDS54 TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF
      360       370       380       390       400       410        

     390       400       410       420       430       440         
pF1KB5 RELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKG
        :..: :::::.:.:::.: . ::.    ...:.: .::: ::. : . :.::. : . :
CCDS54 GEVTSASNCTDFQSRRLHIMF-QTEA--GELQFAHTVNATACAVPRLLIALLESNQQKDG
      420       430        440         450       460       470     

      450       460       470       480       490       500        
pF1KB5 -ITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN
        . ::  :. ..                                                
CCDS54 SVLVPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS               
         480       490       500       510       520               




514 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:50:31 2016 done: Sat Nov  5 12:50:31 2016
 Total Scan time:  3.100 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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