FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0416, 352 aa
  1>>>pF1KE0416 352 - 352 aa - 352 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0052+/-0.000853; mu= 14.1212+/- 0.052
 mean_var=110.9587+/-23.161, 0's: 0 Z-trim(108.8): 89  B-trim: 0 in 0/52
 Lambda= 0.121757
 statistics sampled from 10386 (10476) to 10386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.322), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS208.1 MUL1 gene_id:79594|Hs108|chr1            ( 352) 2348 423.2 1.7e-118


>>CCDS208.1 MUL1 gene_id:79594|Hs108|chr1                 (352 aa)
 initn: 2348 init1: 2348 opt: 2348  Z-score: 2241.0  bits: 423.2 E(32554): 1.7e-118
Smith-Waterman score: 2348; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KE0 MESGGRPSLCQFILLGTTSVVTAALYSVYRQKARVSQELKGAKKVHLGEDLKSILSEAPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MESGGRPSLCQFILLGTTSVVTAALYSVYRQKARVSQELKGAKKVHLGEDLKSILSEAPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TNTVPFDLVPHEDGVDVAVRVLKPLDSVDLGLETVYEKFHPSIQSFTDVIGHYISGERPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 TNTVPFDLVPHEDGVDVAVRVLKPLDSVDLGLETVYEKFHPSIQSFTDVIGHYISGERPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GIQETEEMLKVGATLTGVGELVLDNNSVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 GIQETEEMLKVGATLTGVGELVLDNNSVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KVLALVFGFATCATLFFILRKQYLQRQERLRLKQMQEEFQEHEAQLLSRAKPEDRESLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 KVLALVFGFATCATLFFILRKQYLQRQERLRLKQMQEEFQEHEAQLLSRAKPEDRESLKS
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KE0 ACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAITRVIPLYNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAITRVIPLYNS
              310       320       330       340       350  




352 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:28:00 2016 done: Thu Nov  3 11:28:00 2016
 Total Scan time:  2.460 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]