GENSCAN 1.0	Date run:  4-Nov-116	Time: 03:13:01

Sequence gi568815586r:110392008_110596204 : 204197 bp : 44.04% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.23 Intr -   3213   3094  120  0  0   46  106    52 0.854   3.49
 1.22 Intr -   4423   4259  165  1  0   73   91    84 0.539   7.36
 1.21 Intr -   9451   9346  106  0  1   57   81    44 0.509   0.82
 1.20 Intr -  11813  11520  294  1  0   29   86   234 0.585  13.42
 1.19 Intr -  13601  13469  133  0  1   84   74    40 0.625   1.90
 1.18 Intr -  13964  13854  111  0  0   79   91    34 0.677   3.15
 1.17 Intr -  16528  16447   82  1  1   75  115    66 0.944   7.21
 1.16 Intr -  44197  44103   95  2  2   60  116    30 0.906   2.68
 1.15 Intr -  44676  44550  127  0  1   77   95    41 0.980   3.95
 1.14 Intr -  45145  45077   69  1  0  120   86   -20 0.562   0.38
 1.13 Intr -  48381  48305   77  1  2   77   94   140 0.995  12.73
 1.12 Intr -  53544  53445  100  0  1   77   89    21 0.518   0.78
 1.11 Intr -  61864  61736  129  1  0   38   86   139 0.995   9.59
 1.10 Intr -  63675  63579   97  2  1   70  107    61 0.997   6.21
 1.09 Intr -  63923  63808  116  2  2   96   81   104 0.991   9.75
 1.08 Intr -  65627  65503  125  0  2   47   47    74 0.890  -0.50
 1.07 Intr -  67855  67688  168  2  0   76   68   210 0.929  17.72
 1.06 Intr -  73207  73099  109  1  1   83  119   163 0.619  18.76
 1.05 Intr -  76980  76720  261  0  0   58   52   225 0.455  13.58
 1.04 Intr - 100115 100028   88  1  1  104    9    66 0.008   0.27
 1.03 Intr - 101224 100989  236  1  2   60   92   121 0.911   6.19
 1.02 Intr - 104196 104005  192  0  0   23   49   151 0.135   4.39
 1.01 Init - 110341 110282   60  1  0   81   49    86 0.059   5.48
 1.00 Prom - 112656 112617   40                              -2.06

 2.00 Prom + 113285 113324   40                              -3.86
 2.01 Init + 126209 126216    8  1  2   40  103     0 0.317  -2.87
 2.02 Intr + 127787 127909  123  2  0   69  116    36 0.793   4.20
 2.03 Intr + 130170 130404  235  0  1   73   93    67 0.825   3.39
 2.04 Term + 135365 135514  150  1  0  103   53    77 0.759   3.61
 2.05 PlyA + 135636 135641    6                               1.05

 3.07 PlyA - 138980 138975    6                               1.05
 3.06 Term - 145088 145030   59  0  2   97   37    61 0.700  -0.25
 3.05 Intr - 146266 146137  130  1  1   72   99   114 0.997  11.17
 3.04 Intr - 147938 147815  124  1  1  106   86   119 0.779  14.09
 3.03 Intr - 154071 153873  199  1  1   59   89   177 0.997  13.31
 3.02 Intr - 159961 159782  180  2  0  101  123    22 0.880   6.84
 3.01 Init - 191024 190802  223  2  1   68  109   563 0.892  53.32
 3.00 Prom - 201471 201432   40                              -2.96


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  36834  36990  157  2  1   80   53   130 0.805   8.85
S.002 Term -  43210  43148   63  1  0   72   49    42 0.834  -3.41
S.003 Init -  68373  68346   28  0  1   34   89     1 0.855  -5.44
S.004 Sngl +  68981  69229  249  1  0   75   41   356 0.997  24.68
S.005 Term -  72532  72522   11  2  2  108   40    12 0.925  -3.24
S.006 Intr +  94318  94419  102  0  0   95   32   101 0.836   5.57
S.007 Term +  94527  94697  171  2  0   58   54    93 0.825   0.73
S.008 Term - 100115  99998  118  1  1  104   42    71 0.966   2.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:110392008_110596204|GENSCAN_predicted_peptide_1|1020_aa
MAAIRPKKQARKARLSSTAQLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLC
TKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLAL
LQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVV
TYVYQLIGDDVKRAALQKSYAPSSRTPDPGRASPRRRDREPCAGAAVPASLPRQHACVRL
LVFRRGGSDAGFSPLRSRSDTARTASGERGGQIRDPGVTSTYCATMVQHCEALNRSVQVV
NLDPAAEHFNYSVMADIRELIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGH
VEDDYILFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILA
ALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKA
ICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFKEPKAYHSSLMDPDTKL
IGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYI
SECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQ
LRQETGLRLCEKVFDPQNDKPSKWLKTDTARSPRKPTGPSQTLWVTLTVEGKVEWTNGLL
KTHLTKLSLQLKKDSVKDRAPKLTNQAGSHTPPPIPLEAALKNIAHYLSIPPPKIFAAAT
LYDYFVLFFLLTTTTGAGTRVSFYSGTSVVTSCLGVVPRVDPMDPGDAAILESSLRILYR
LFESVLPPLPAALQSRMNVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPTLGYSHFSTL
RITHQLKAQWLCAISTHMLIECVEEKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL
SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPK

>gi568815586r:110392008_110596204|GENSCAN_predicted_CDS_1|3060_bp
atggctgccatccgccctaaaaagcaggctcggaaggcgcgcctcagctcgacggcccag
ttggtgttggtattaggagatctgcacatcccacaccggtgcaacagtttgccagctaaa
ttcaaaaaactcctggtgccaggaaaaattcagcacattctctgcacaggaaacctttgc
accaaagagagttatgactatctcaagactctggctggtgatgttcatattgtgagagga
gacttcgatgagaatctgaattatccagaacagaaagttgtgactgttggacagttcaaa
attggtctgatccatggacatcaagttattccatggggagatatggccagcttagccctg
ttgcagaggcaatttgatgtggacattcttatctcgggacacacacacaaatttgaagca
tttgagcatgaaaataaattctacattaatccaggttctgccactggggcatataatgcc
ttggaaacaaacattattccatcatttgtgttgatggatatccaggcttctacagtggtc
acctatgtgtatcagctaattggagatgatgtgaaacgggcggctctgcagaagagctac
gctccgtccagtcggaccccggaccctggccgggcatctccgcggcgccgagaccgcgag
ccgtgtgcgggagcagctgtcccagcatccctcccccgacagcacgcgtgcgtcaggctg
ctggtattccggagaggcggctcggatgctggcttctcgcccctccgaagccgttcggac
actgcccgaacagcttcgggagagcggggcgggcagatccgcgaccccggagttacgagc
acctactgtgccaccatggtccagcactgtgaagccctcaaccggtctgtccaagttgta
aacctggatccagcagcagaacacttcaactactccgtgatggctgacatccgggaactg
atcgaggtggatgatgtaatggaggatgattctctgcgattcggtcccaacggaggattg
gtattttgcatggagtactttgccaataattttgactggctggagaactgtcttggccat
gtagaggacgactatatcctttttgattgtccaggtcagattgagttgtacactcacctg
cctgtgatgaaacagctggtccagcagctcgagcagtgggagttccgagtctgtggagtt
tttcttgttgattctcagttcatggtggagtcattcaagtttatttctggcatcttggca
gccctgagtgccatgatctctctagaaattccgcaagtcaacatcatgacaaaaatggat
ctgctgagtaaaaaagcaaaaaaggaaattgagaaatttttagatccagacatgtattct
ttattagaagattctacaagtgacttaagaagcaaaaaattcaagaaactgactaaagct
atatgtggactgattgatgactacagcatggttcgatttttaccttacgatcagtcagat
gaagaaagcatgaacattgtattgcagcatattgattttgccattcaatatggagaagac
ctagaatttaaagaaccaaaggcttaccactcttctctcatggatcctgataccaaactc
atcggaaacatggcactgttgcctatcagaagtcaattcaaaggacctgcccccagagag
acaaaagatacagatattgtggatgaagccatctattacttcaaggccaatgtcttcttc
aaaaactatgaaattaagaatgaagctgataggaccttgatatatataactctctacatt
tctgaatgtctgaagaaactgcaaaagtgcaattccaaaagccaaggtgagaaagaaatg
tatacgctgggaatcactaattttcccattcctggagagcctggttttccacttaacgca
atttatgccaaacctgcaaacaaacaggaagatgaagtgatgagagcctatttacaacag
ctaaggcaagagactggactgagactttgtgagaaagttttcgaccctcagaatgataaa
cccagcaagtggctgaagactgacactgcccgatcacctcggaagcctacaggaccatca
cagacgctttgggtaactcttacagtggaaggaaaggtagaatggactaatggtctttta
aaaacacacctcaccaagctcagcctccaacttaaaaaggactctgtcaaggatagagcc
ccaaaactcaccaaccaagcaggttcccacacaccacccccaatcccacttgaagcagcc
ctgaaaaacatcgcccattatctctccataccacccccaaaaattttcgctgccgcaaca
ctttacgactatttcgttttattcttcttgttaacgaccacgacaggagcagggactcga
gtttctttttattcgggcacttcagtagttacctcttgcttgggggtggtgccgcgtgtg
gacccgatggaccccggcgacgccgccattttggagtcttccctaaggatcctctaccgg
cttttcgagtcagtgctgccgccgctgcccgcggctttgcagagcaggatgaatgtgata
gaccacgtgcgggacatggcggccgcggggctgcactccaacgtgcggctcctcagcagc
ttgttacttacaatgagtaataacaacccgactctcgggtactcccacttttctaccctt
cgcatcacccaccaattgaaagcgcagtggctgtgcgcaataagcactcacatgcttatt
gagtgtgttgaggaaaagtaccagcttttggtgtatcatgcagattctctctttcatgat
aaggaatatcggaatgctgtgagtaagtataccatggctttacagcagaagaaagcgcta
agtaaaacttcaaaagtgagaccttcaactggaaattctgcatctactccacaaagtcag
tgtcttccatctgaaattgaagtgaaatacaaaatggctgaatgttatacaatgctaaaa
caagataaagatgccattgctatacttgatgggatcccttcaagacaaagaactcccaaa

>gi568815586r:110392008_110596204|GENSCAN_predicted_peptide_2|171_aa
MCIPLALSIDDMLVEANFILATLADEQSRASSPQSLCLSQKRKRSDLIEKKAGKNVTGQA
LECISKKAAPRRLYPKETLTNISALENCGSPAMKRVDGDVSEVSESSVSNTEEVPGSLCL
RKCDITSSEVHGLSTWTSGNHFPACHSQYHGYLESRFNSCKASLAEGIFTF

>gi568815586r:110392008_110596204|GENSCAN_predicted_CDS_2|516_bp
atgtgcatacctctggctttgagtattgatgatatgttagtggaagctaactttattttg
gccacattagctgatgaacaaagtagagcatcttcaccacagtcactgtgtctttcacag
aaacgaaaaaggtcagatctgattgaaaaaaaggctggcaaaaatgtaactggccaggcc
ctggaatgtatttcaaaaaaagcagcaccaagaaggctttatcctaaggagactctcaca
aacatatctgcattggaaaactgtggcagccctgcaatgaaaagagtggatggagatgtc
agtgaagtatcagaaagcagtgtcagcaacacagaggaagtgccagggtctctgtgtctc
agaaagtgtgacataacatcttcagaggttcatgggcttagtacatggacctctgggaac
cattttcctgcctgccacagccagtatcacggctatctggagagcaggttcaacagctgc
aaggcaagccttgcagagggcatcttcaccttctga

>gi568815586r:110392008_110596204|GENSCAN_predicted_peptide_3|304_aa
MFSVLSYGRLVARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGD
DACFVARHRSADVLGVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILT
TSYCELLQNKVPLLGSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYF
NTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKK
LKNSNYESIQQTARSIAEQAHELAYDPNYMSPFAQFACDNGLNVRGGKPDDITVLLSIVA
EYTD

>gi568815586r:110392008_110596204|GENSCAN_predicted_CDS_3|915_bp
atgttctcggtcctctcgtacgggcggctggtggcccgcgccgtgctcggcggcctctcg
cagaccgaccccagggccggcggcggcggcggcggcgactacggactggtgacggccggc
tgcggcttcgggaaggacttccgtaagggcctcctcaagaagggcgcgtgctacggggac
gacgcgtgcttcgtggcccggcaccgttccgcggacgtgctcggggttgcagatggtgta
ggaggctggagagactatggagttgatccatctcaattctcagggactttaatgcggacg
tgtgaacgtttagtaaaagaaggacggttcgtacctagtaatcccattggaattctcacc
acaagctactgtgagttgctgcaaaataaagtccctttgctcggtagcagcaccgcctgc
attgtggtgctggacagaaccagccaccgcttacacacagcaaacctgggcgattcaggc
ttcctggttgtcaggggtggtgaagtcgtgcaccgatcagatgagcagcagcattacttc
aacactccattccagctctcaatcgctccccctgaagccgagggagtcgtcttgagcgac
agtccggatgctgctgatagcacgtctttcgatgtccagctaggagacattatcctgacg
gcaacagatggactctttgacaacatgcctgattatatgattcttcaggagctaaaaaag
ttaaagaattcaaattatgagagtatacaacagactgccagaagcattgctgagcaagct
catgagctggcctatgacccaaattatatgtcaccttttgcacagtttgcatgtgacaat
ggattgaatgtgagaggtggaaagccagatgacatcaccgtccttctttcaatagtggct
gagtatacagactag