Result of FASTA (omim) for pF1KE0410
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0410, 185 aa
  1>>>pF1KE0410 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5318+/-0.000283; mu= 17.6775+/- 0.018
 mean_var=65.1612+/-12.598, 0's: 0 Z-trim(118.3): 15  B-trim: 16 in 1/56
 Lambda= 0.158884
 statistics sampled from 31190 (31205) to 31190 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.366), width:  16
 Scan time:  6.150

The best scores are:                                      opt bits E(85289)
NP_001275493 (OMIM: 616877) transmembrane protein  ( 183) 1217 286.8 1.3e-77
NP_057540 (OMIM: 616877) transmembrane protein 9 i ( 183) 1217 286.8 1.3e-77
NP_001275494 (OMIM: 616877) transmembrane protein  ( 183) 1217 286.8 1.3e-77
NP_001275495 (OMIM: 616877) transmembrane protein  ( 183) 1217 286.8 1.3e-77
NP_001275496 (OMIM: 616877) transmembrane protein  ( 183) 1217 286.8 1.3e-77
NP_001275498 (OMIM: 616877) transmembrane protein  ( 183) 1217 286.8 1.3e-77
NP_001275497 (OMIM: 616877) transmembrane protein  ( 183) 1217 286.8 1.3e-77
XP_011507687 (OMIM: 616877) PREDICTED: transmembra ( 186) 1201 283.2 1.7e-76
NP_001275499 (OMIM: 616877) transmembrane protein  ( 186) 1201 283.2 1.7e-76
XP_011507688 (OMIM: 616877) PREDICTED: transmembra ( 186) 1201 283.2 1.7e-76
XP_011507689 (OMIM: 616877) PREDICTED: transmembra ( 186) 1201 283.2 1.7e-76
NP_001275500 (OMIM: 616877) transmembrane protein  ( 208) 1081 255.7 3.5e-68


>>NP_001275493 (OMIM: 616877) transmembrane protein 9 is  (183 aa)
 initn: 859 init1: 859 opt: 1217  Z-score: 1514.3  bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)

               10        20        30        40        50        60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
      120       130       140       150       160       170        

            
pF1KE0 HKMLS
       :::::
NP_001 HKMLS
      180   

>>NP_057540 (OMIM: 616877) transmembrane protein 9 isofo  (183 aa)
 initn: 859 init1: 859 opt: 1217  Z-score: 1514.3  bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)

               10        20        30        40        50        60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  :::::
NP_057 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
      120       130       140       150       160       170        

            
pF1KE0 HKMLS
       :::::
NP_057 HKMLS
      180   

>>NP_001275494 (OMIM: 616877) transmembrane protein 9 is  (183 aa)
 initn: 859 init1: 859 opt: 1217  Z-score: 1514.3  bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)

               10        20        30        40        50        60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
      120       130       140       150       160       170        

            
pF1KE0 HKMLS
       :::::
NP_001 HKMLS
      180   

>>NP_001275495 (OMIM: 616877) transmembrane protein 9 is  (183 aa)
 initn: 859 init1: 859 opt: 1217  Z-score: 1514.3  bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)

               10        20        30        40        50        60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
      120       130       140       150       160       170        

            
pF1KE0 HKMLS
       :::::
NP_001 HKMLS
      180   

>>NP_001275496 (OMIM: 616877) transmembrane protein 9 is  (183 aa)
 initn: 859 init1: 859 opt: 1217  Z-score: 1514.3  bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)

               10        20        30        40        50        60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
      120       130       140       150       160       170        

            
pF1KE0 HKMLS
       :::::
NP_001 HKMLS
      180   

>>NP_001275498 (OMIM: 616877) transmembrane protein 9 is  (183 aa)
 initn: 859 init1: 859 opt: 1217  Z-score: 1514.3  bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)

               10        20        30        40        50        60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
      120       130       140       150       160       170        

            
pF1KE0 HKMLS
       :::::
NP_001 HKMLS
      180   

>>NP_001275497 (OMIM: 616877) transmembrane protein 9 is  (183 aa)
 initn: 859 init1: 859 opt: 1217  Z-score: 1514.3  bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)

               10        20        30        40        50        60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
      120       130       140       150       160       170        

            
pF1KE0 HKMLS
       :::::
NP_001 HKMLS
      180   

>>XP_011507687 (OMIM: 616877) PREDICTED: transmembrane p  (186 aa)
 initn: 986 init1: 859 opt: 1201  Z-score: 1494.4  bits: 283.2 E(85289): 1.7e-76
Smith-Waterman score: 1201; 97.3% identity (97.3% similar) in 188 aa overlap (1-185:1-186)

               10        20           30        40        50       
pF1KE0 MKLLSLVAVVGCLLVPPAEANK---SSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNC
       ::::::::::::::::::::::   :::::::::::::::::::::::::::::::  ::
XP_011 MKLLSLVAVVGCLLVPPAEANKVRESSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NC
               10        20        30        40        50          

        60        70        80        90       100       110       
pF1KE0 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
       60        70        80        90       100       110        

       120       130       140       150       160       170       
pF1KE0 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
      120       130       140       150       160       170        

       180     
pF1KE0 FDRHKMLS
       ::::::::
XP_011 FDRHKMLS
      180      

>>NP_001275499 (OMIM: 616877) transmembrane protein 9 is  (186 aa)
 initn: 986 init1: 859 opt: 1201  Z-score: 1494.4  bits: 283.2 E(85289): 1.7e-76
Smith-Waterman score: 1201; 97.3% identity (97.3% similar) in 188 aa overlap (1-185:1-186)

               10        20           30        40        50       
pF1KE0 MKLLSLVAVVGCLLVPPAEANK---SSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNC
       ::::::::::::::::::::::   :::::::::::::::::::::::::::::::  ::
NP_001 MKLLSLVAVVGCLLVPPAEANKVRESSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NC
               10        20        30        40        50          

        60        70        80        90       100       110       
pF1KE0 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
       60        70        80        90       100       110        

       120       130       140       150       160       170       
pF1KE0 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
      120       130       140       150       160       170        

       180     
pF1KE0 FDRHKMLS
       ::::::::
NP_001 FDRHKMLS
      180      

>>XP_011507688 (OMIM: 616877) PREDICTED: transmembrane p  (186 aa)
 initn: 986 init1: 859 opt: 1201  Z-score: 1494.4  bits: 283.2 E(85289): 1.7e-76
Smith-Waterman score: 1201; 97.3% identity (97.3% similar) in 188 aa overlap (1-185:1-186)

               10        20           30        40        50       
pF1KE0 MKLLSLVAVVGCLLVPPAEANK---SSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNC
       ::::::::::::::::::::::   :::::::::::::::::::::::::::::::  ::
XP_011 MKLLSLVAVVGCLLVPPAEANKVRESSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NC
               10        20        30        40        50          

        60        70        80        90       100       110       
pF1KE0 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
       60        70        80        90       100       110        

       120       130       140       150       160       170       
pF1KE0 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
      120       130       140       150       160       170        

       180     
pF1KE0 FDRHKMLS
       ::::::::
XP_011 FDRHKMLS
      180      




185 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:52:02 2016 done: Thu Nov  3 11:52:02 2016
 Total Scan time:  6.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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