GENSCAN 1.0	Date run:  3-Nov-116	Time: 12:15:01

Sequence gi568815582r:8695955_8896591 : 200637 bp : 48.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4157   4170   14  1  2  114   73    15 0.037   0.81
 1.02 Intr +  19108  19294  187  1  1   92   37    78 0.171   2.79
 1.03 Intr +  23508  23579   72  2  0   81   64    42 0.100   0.70
 1.04 Intr +  34145  34245  101  1  2   98   86    28 0.317   2.51
 1.05 Term +  35487  35622  136  0  1   40   33   132 0.484   0.39
 1.06 PlyA +  38448  38453    6                               1.05

 2.00 Prom +  39611  39650   40                              -5.46
 2.01 Init +  39786  39855   70  2  1   96  107   133 0.798  15.29
 2.02 Intr +  50047  50144   98  2  2   87  109    87 0.732  10.43
 2.03 Intr +  52154  52183   30  1  0  105  111     7 0.784   3.03
 2.04 Intr +  54468  54585  118  2  1   71   82   121 0.995   9.84
 2.05 Intr +  61803  61852   50  1  2  100   78    22 0.656   0.80
 2.06 Intr +  68115  68195   81  2  0  106  109    78 0.913  11.53
 2.07 Intr +  68784  68876   93  2  0  136   76   115 0.999  15.26
 2.08 Intr +  70254  70316   63  2  0   88  109    27 0.929   3.71
 2.09 Intr +  72239  72302   64  1  1  117   82    69 0.876   7.49
 2.10 Intr +  72871  73019  149  2  2   52   80   174 0.943  12.95
 2.11 Intr +  76826  76963  138  1  0   54   86   325 0.972  29.56
 2.12 Intr +  78936  79103  168  2  0   86   68   276 0.999  25.54
 2.13 Intr +  80390  80536  147  1  0   80   92   258 0.991  25.83
 2.14 Intr +  83525  83636  112  1  1  106  116    79 0.999  12.45
 2.15 Term +  85355  85476  122  0  2  124   43    41 0.660   1.84
 2.16 PlyA +  87422  87427    6                               1.05

 3.02 PlyA -  87713  87708    6                               1.05
 3.01 Sngl - 100468  99998  471  1  0    1   47   546 0.639  37.92
 3.00 Prom - 101115 101076   40                              -9.75

 4.00 Prom + 101258 101297   40                             -14.13
 4.01 Init + 101659 101994  336  0  0   84  111   150 0.117  14.36
 4.02 Intr + 105845 105956  112  1  1   60   54    74 0.207   1.15
 4.03 Intr + 106336 106407   72  2  0   74   48    92 0.680   3.18
 4.04 Intr + 108813 108889   77  1  2   46   96    56 0.778   1.43
 4.05 Intr + 110362 110453   92  0  2   67   90    30 0.810  -0.11
 4.06 Intr + 115125 115285  161  0  2   59   46   156 0.840   8.13
 4.07 Intr + 117037 117152  116  2  2   65  100    97 0.996   8.77
 4.08 Intr + 118386 118455   70  2  1   95   57    64 0.269   2.75
 4.09 Intr + 135849 135924   76  1  1  100   86   -35 0.022  -3.93
 4.10 Intr + 136167 136346  180  0  0   86   16    96 0.247   1.18
 4.11 Term + 136875 137082  208  0  1  120   44   119 0.393   7.51
 4.12 PlyA + 137542 137547    6                               1.05

 5.09 PlyA - 137912 137907    6                               1.05
 5.08 Term - 139498 139322  177  1  0   75   33   124 0.156   3.29
 5.07 Intr - 145309 145175  135  1  0   60   81    52 0.155   2.46
 5.06 Intr - 148543 148400  144  1  0   74   90    11 0.113   0.38
 5.05 Intr - 152991 152682  310  2  1   44   86   144 0.176   6.12
 5.04 Intr - 159372 159235  138  2  0  106    6   186 0.025  11.78
 5.03 Intr - 162518 162396  123  1  0  101   61   145 0.992  12.80
 5.02 Intr - 163344 163217  128  0  2   68   69    70 0.601   2.58
 5.01 Init - 163447 163442    6  1  0   95   86     0 0.536   1.55
 5.00 Prom - 170014 169975   40                              -8.56

 6.00 Prom + 172228 172267   40                             -10.05
 6.01 Init + 172918 173092  175  0  1   99   23   108 0.584   2.96
 6.02 Intr + 173659 173832  174  2  0   85   77   107 0.942   9.21
 6.03 Intr + 187256 187332   77  0  2   84   96    56 0.538   5.23
 6.04 Intr + 188369 188511  143  1  2  113  100   230 0.746  25.85
 6.05 Intr + 189233 189337  105  2  0   60   50   140 0.527   6.73
 6.06 Term + 193316 193445  130  2  1   89   49    68 0.372   0.65
 6.07 PlyA + 194580 194585    6                               1.05

 7.06 PlyA - 196843 196838    6                               1.05
 7.05 Term - 198150 198044  107  1  2  113   34    51 0.584   0.77
 7.04 Intr - 198686 198596   91  2  1   50  107   112 0.998   8.87
 7.03 Intr - 198901 198830   72  1  0   97   75   154 0.999  14.60
 7.02 Intr - 199196 199077  120  2  0   98   85    94 0.915  10.79
 7.01 Intr - 199787 199688  100  1  1  104   55    64 0.964   4.81

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 159372 159210  163  2  1  106   49   198 0.974  15.11
S.002 Term + 173862 174064  203  1  2   70   42    95 0.961   0.65


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:8695955_8896591|GENSCAN_predicted_peptide_1|169_aa
MPSLQNHLDPLTSHVQPTSFSTFARELHFILQGHKEDYSRNYMQNDWLGFLKRQCLLKGK
RAEKWFQFFHRLGNYLPASNDVFVLPGFLIEELPPRALGMKRDGSTAPAESLHIASAQYL
MMLRGHSKLIESCNSQGYNDCSNNVKWQTLDQKATHLSFVKALEAVVVV

>gi568815582r:8695955_8896591|GENSCAN_predicted_CDS_1|510_bp
atgcccagcctgcaaaatcacttggaccctctgacatcacatgtccaaccgacctctttc
tccacatttgcccgtgagctgcacttcattttgcaaggacataaagaagactattcacgc
aactacatgcaaaatgactggctgggattcctaaaacgccaatgtcttttaaaaggcaaa
agggctgagaaatggttccagttttttcacaggctgggtaactacctgcctgctagcaac
gatgtgttcgttctccctggattcctgattgaggagctgcctcctagggctctggggatg
aaacgagatggttctacagcaccagctgagagcctgcacatagcaagtgcccagtacttg
atgatgcttagaggccacagcaaacttatagagagctgcaactctcagggatacaatgac
tgctccaacaatgtgaaatggcagactctggaccagaaggccacacacctgagttttgtc
aaagcactggaagccgtggtagttgtctag

>gi568815582r:8695955_8896591|GENSCAN_predicted_peptide_2|500_aa
MASMLLAQRLACSFQHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMK
QLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQ
NASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYR
SKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS
FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG
DNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMM
TGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLL
DLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVF
RDHHAHLFLNIFSDILADFK

>gi568815582r:8695955_8896591|GENSCAN_predicted_CDS_2|1503_bp
atggcctccatgttgctcgcccagcgcctggcctgcagcttccagcacagctaccgcctg
ctggtgcctggatccagacacattagtcaagctgcagccaaagtcgacgttgaatttgat
tatgatgggcctctgatgaagacggaagtcccagggcctagatctcaggagttaatgaaa
cagctgaatataattcagaatgcagaggctgtgcattttttctgcaattacgaagagagc
cgaggcaattacctggttgatgtggacggcaaccgaatgctggatctttattcccagatc
tcctctgtccccataggttacagccaccccgccctgctgaaactcatccaacagcctcaa
aatgcgagcatgtttgtcaacagacccgccctcggaatcctgcctccggagaactttgtg
gagaagctccggcagtccttgctctcggtggctcccaaagggatgtcccagctcatcacc
atggcctgcggctcctgctccaatgaaaacgccttaaagaccatcttcatgtggtaccgg
agcaaggaaagagggcagaggggcttctcccaggaggagctggagacgtgcatgattaac
caggcccctggctgccccgactacagcatcctctccttcatgggcgcgttccatgggagg
accatgggttgcttagcgaccacgcactctaaagccattcacaagatcgacatcccttcc
tttgactggcccatcgcaccgttcccacggctgaaataccctctggaagagtttgtgaaa
gagaaccaacaggaggaggcccgctgtctggaagaggtggaggatctgattgtgaaatat
cggaaaaagaagaagacggtggccgggatcatcgtggagcccatccagtccgagggtgga
gacaaccacgcatccgatgacttctttcggaagctgagagacatcgccaggaagcatggc
tgcgccttcttggtggacgaggtccagaccggaggaggctgcacgggcaagttctgggcc
catgagcactggggcctggatgacccagcagacgtgatgaccttcagcaagaagatgatg
actgggggcttcttccacaaggaggagttcaggcctaatgctccctaccggatcttcaac
acctggctgggggacccgtccaagaacctgttgctggctgaggtcatcaacatcatcaag
cgggaggacctgctaaataatgcagcccatgccgggaaggccctgctcacaggactgctg
gacctccaggcccggtacccccagttcatcagcagggtgagaggacgaggcaccttttgc
tccttcgatactcccgatgattccatacggaataagctcattttaattgccagaaacaaa
ggtgtggtgttgggtggctgtggtgacaaatccattcgtttccgtcccacgctggtcttc
agggatcaccacgctcacctgttcctcaatattttcagtgacatcttagcagacttcaag
taa

>gi568815582r:8695955_8896591|GENSCAN_predicted_peptide_3|156_aa
MFYRFDAIRTFGFLSRLKLAQTALTVVALPPGYYLYSQGLLTLNTVCLMSGISGFALTML
CWMSYFLRRLVGILYLNESGTMLRVAHLNFWGWRQDTYCPMADVIPLTETKDRPQEMFVR
IQRYSGKQTFYVTLRYGRILDRERFTQVFGVHQMLK

>gi568815582r:8695955_8896591|GENSCAN_predicted_CDS_3|471_bp
atgttttaccgttttgatgccatcagaaccttcgggttcctgtcacgactgaagttggca
cagactgccctgacagtggtagctttgccaccaggctattacttgtactcccagggcctc
ctcactctcaacaccgtgtgcctcatgagtgggatatcgggctttgccctgaccatgctg
tgctggatgagctatttcttacggagactggttggtatcctgtatctgaatgagtctggc
accatgctgcgggtggcccatctgaacttctggggctggcggcaggacacatactgtccc
atggcagatgtgattcccctgacagaaaccaaggaccggcctcaggagatgtttgtgcgt
atccagcggtacagtgggaaacagaccttctacgtcaccctgcgctatggacgcatcctg
gacagagagcgtttcacacaggtgtttggggtacatcagatgctcaagtga

>gi568815582r:8695955_8896591|GENSCAN_predicted_peptide_4|499_aa
MAPPPAAGSKSHRPPEPLRAHARMYKAGVICVAPWELRSRNRGCRYSQALWERSPLLFPT
CPATQRPNPEVPGRVPRANVSCKVRLETGDMAAPGPALCLFDVDGTLTAPRQKITKEMDD
FLQKLRQKIKIGVVGGSDFEKVQEQLGNDESPAQDPEKPERLIDPFTGESDLIVVEKYDY
VFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGM
LNVSPIGRSCSQEERIEFYELDKVRLSEISLVNGWVYGNKIWPGGQISFDVFPDGWDKRY
CLRHVENDGYKTIYFFGDKTMPAGGVGYLAISRPVSGFLAILHLADFGTIRDLNINARIS
LSPGLSLVPVSYSGMQARHSPKKAAPQEGAHHALRVTKKEADPWRERKEGLRQVVFVMQM
LLRAVRLSESGVFSDGHMACALTSLRCQGSLTLQAWQPFPPFAQQGAQELSVDDWSPQGS
CDVVLVCAVSPAAKAMPGG

>gi568815582r:8695955_8896591|GENSCAN_predicted_CDS_4|1500_bp
atggccccaccacctgctgccggaagtaaatcccaccggcccccggaacccctaagagcg
catgctcgaatgtacaaggcgggcgtgatctgcgttgcaccctgggagttgcggtccagg
aatcgtggctgccgctactcccaggcgttatgggaacggagtcccctcctcttcccgacg
tgccctgcgactcagcggccgaacccggaagttccgggccgagttcctcgtgccaacgtg
tcttgtaaggtgcggctagaaactggggacatggcagcgcctggcccagcgctctgcctc
ttcgacgtggatgggaccctcaccgccccgcggcagaaaattaccaaagaaatggatgac
ttcctacaaaaattgaggcagaagatcaaaatcggagtggtaggcggatcggactttgag
aaagtgcaggagcaactgggaaatgatgaatctccagcacaggaccccgaaaaaccagag
aggcttattgaccccttcactggagagtctgacttgatagtggttgaaaaatacgattat
gtgtttccagaaaatggcttggtagcatacaaagatgggaaactcttgtgtagacagaat
attcaaagtcatctgggtgaggccctaatccaagatttaatcaactactgtctgagctac
attgcgaaaattaaactcccgaagaagaggggtactttcattgaattccgaaatgggatg
ttaaacgtgtcccctattggaagaagctgcagccaagaagaacgcattgagttctacgaa
ctcgataaagtacgtctttctgaaatatctttggtgaatggctgggtttatggaaataag
atatggcctggaggccagatcagctttgatgtctttcctgatggatgggacaagagatac
tgtctgcgacatgtggaaaatgacggttataagaccatttatttctttggagacaaaact
atgccagctgggggtgttggttaccttgccatcagcaggcccgtgtcaggctttctcgcc
atcctgcacctagcagactttgggactattagggatttaaatattaatgcgcggatttca
ctgagccctggcctctctttggtgcctgtcagctactctggtatgcaagctcgacacagc
cccaagaaggctgcaccccaggaaggagcccaccatgctctgagagtcacaaagaaagaa
gcagacccttggcgggagagaaaggaaggcctgaggcaggttgtgtttgtgatgcagatg
ctcctgcgagccgtgcggctctctgaaagcggcgtcttctctgatggccacatggcctgt
gccctcacgtccctcagatgccagggttccctcaccctccaggcctggcagcccttccct
ccctttgctcaacaaggcgcccaagagctgtctgttgatgactggtctccccagggcagc
tgtgatgtggttttggtttgcgccgtatccccagctgctaaagcaatgcctggcgggtag

>gi568815582r:8695955_8896591|GENSCAN_predicted_peptide_5|386_aa
MGPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCK
CFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVI
THLAPGTKHETWKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKA
WVSADRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWGQEPP
NPFSFTLSGKSRFSGGEASTPNSYLCAPIPYFHAPTPFPLFWRSDNGPAFTSQITQAVSQ
ALSIQWNLHIPYSPQSSGKVERTNGLLKLDDPDTHQAQQITWAVRPQGFTDSPHYFSQAQ
ISSPSVTYLGIILIKTHVLSLLIVSD

>gi568815582r:8695955_8896591|GENSCAN_predicted_CDS_5|1161_bp
atggggccccccacccatcaagcttcagtcgggctgctggacacccctcggagccgtgag
cgctcaccatcccctctgcggggcaacgtggtcccaagcccactgcccactcgccggacg
aggaccttctcggcgacggtgcgggcttcacagggccccgtctacaaaggagtctgcaaa
tgcttctgccggtccaagggccatggcttcattactccagctgatggcggccccgacatc
ttcctgcacatctctgatgtggaaggggagtatgtcccagtggaaggcgacgaggtcacc
tataaaatgtgctccatcccacccaagaatgagaagctgcaggccgtggaggtcgtcatc
actcacctggcaccaggcaccaagcatgagacctggaaagttctcttccaccgtgttcta
gctgagacccgggatccttccagtttcacgaagaacgtgcagaagatgaaaagagtgagg
gacgcggacctagctgtagctgcactcagccgcctccgtggtaaagtctgggtgaaggcc
tgggtgagtgcagataggagagcagctcctcttactgttctctggctgggctctcgctcc
atccctgagaaactagaggcgaacgcctccaggaagccagccaggggcaaccagaaagtc
cttttggtgaagtctgacatcccgcgttggtttctctggacctgggggcaagaacccccc
aaccccttctccttcacccttagcggcaagtcccgcttttctgggggagaggcaagtacc
ccaaactcgtatctctgtgccccaatcccttatttccatgccccaacccctttcccgctt
ttctggaggtctgataacggaccagcctttactagtcaaatcacccaagcagtttctcag
gctcttagtattcagtggaaccttcatatcccttacagtcctcaatcttcaggaaaggta
gaacggactaatggtcttttaaagttagatgaccctgacacccatcaggctcagcaaatt
acctgggctgtacggccacaaggcttcacagacagcccccactacttcagtcaagcccaa
atttcatccccatctgttacctatctcggcataattctcataaaaacacacgtgctctcc
ctgttgatcgtgtctgattaa

>gi568815582r:8695955_8896591|GENSCAN_predicted_peptide_6|267_aa
MEAEEAEAPPLRLPGPRARGAYPGVPEKSSLPCNPFCSASRFAPTESAELGRGRGPRGGE
ETEAQRGDQPMGTASREQPLKASLDPGTRVSLVFEGRGEGERSPELARDNRAPGGGDPYP
AGPPPPYGPPHQMYFEGPQVVQLYAGMSVVGTSMPVQAVCPYCGNRIITVTTFVPGALTW
LLCTTLFLFGYVLGCCFLAFCIRSLMDVKHSCPVCQRELFYYHRLAGLFPSFGACQRGGP
PLADELGKLLNPHLKLGTAPILPRMEG

>gi568815582r:8695955_8896591|GENSCAN_predicted_CDS_6|804_bp
atggaggcagaggaggccgaggccccacccctgcggctcccggggccgcgggccaggggc
gcctatcctggggtccccgagaagagctccctaccctgcaatccgttctgctccgccagc
cgcttcgctccgactgagagcgcggagctggggagggggcgtggcccgagggggggagag
gaaactgaggcacagagaggcgaccagcccatgggcacggccagtcgagagcagcccctg
aaggcgagcctagatcccgggaccagggtcagcttggtatttgaggggcgcggggaagga
gagaggtccccggagctcgcccgggacaacagggcccccggaggcggcgatccttatcct
gctggtccccctcctccctatggtcctcctcaccagatgtactttgaaggcccccaagtt
gttcagctgtatgccggcatgtccgtggtggggacgtccatgccggtgcaggccgtgtgt
ccctactgtggaaaccgcatcatcacggtgacgacctttgtcccgggtgccctcacctgg
ctgctgtgtaccaccctcttcctgttcgggtacgtcctgggctgctgcttcctggcattc
tgcataaggagcctaatggacgtgaagcactcgtgtcccgtgtgtcagcgcgagctcttc
tactaccaccgcctggccggcctcttccccagcttcggggcctgtcagaggggcggccca
ccactggcagatgagcttggcaagttgctgaaccctcatttgaaactggggacagccccc
atcctaccccgcatggagggctga

>gi568815582r:8695955_8896591|GENSCAN_predicted_peptide_7|163_aa
XLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEV
FGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVN
LKDFEPQPGNMSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN

>gi568815582r:8695955_8896591|GENSCAN_predicted_CDS_7|492_bp
nngctgctagaaattgtaagctacaaaatcattggtgttcatcaagaagatgaactatta
gaatgtttatctcctgcaacgagccggacgtttcgaatagaggaaatccctttggaccag
gtggacatagacaaagagaatgagatgcttgtcacagtggcgcatttccacaaagaggtc
ttcggaacgttcggaatcccgtttttgctgaggatacaccagggcgagcattttcgagaa
gtgatgaagcgaatccagagcctgctggacatccaggagaaggagtttgagaagtttaaa
tttgcaattgtaatgatgggccgacaccagtacataaatgaagacgagtatgaagtaaat
ttgaaagactttgagccacagcccggtaatatgtctcatcctcggccttggctagggctc
gaccacttcaacaaagccccaaagaggagtcgctacacttaccttgaaaaggccattaaa
atccataactga