GENSCAN 1.0	Date run:  5-Nov-116	Time: 02:25:44

Sequence gi568815596f:47303192_47582946 : 279755 bp : 45.32% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3286   3436  151  1  1   67   99    55 0.025   4.66
 1.02 Intr +  22540  22633   94  0  1   80   93    69 0.295   6.14
 1.03 Term +  25990  26012   23  2  2   85   44    37 0.320  -2.53
 1.04 PlyA +  28903  28908    6                               1.05

 2.00 Prom +  32033  32072   40                              -4.66
 2.01 Init +  66315  66390   76  2  1  100  100   180 0.702  19.65
 2.02 Intr +  70272  70379  108  1  0   63   75    77 0.808   4.16
 2.03 Intr +  70617  70857  241  1  1   46   75   180 0.441   9.11
 2.04 Intr +  72043  72108   66  1  0   95  105    69 0.936   7.32
 2.05 Intr +  73823  73886   64  2  1   52   56    12 0.857  -6.88
 2.06 Intr +  75762  75863  102  2  0   62   76    48 0.698   1.37
 2.07 Intr +  76578  76778  201  2  0  110  105   176 0.925  20.98
 2.08 Intr +  81975  82019   45  2  0   90   84    24 0.635   0.81
 2.09 Term +  85134  85235  102  2  0   81   49   115 0.982   5.18
 2.10 PlyA +  88316  88321    6                               1.05

 3.00 Prom +  96700  96739   40                              -6.56
 3.01 Init + 100001 100211  211  1  1   96   94   375 0.913  37.85
 3.02 Intr + 105210 105364  155  1  2   88   86    59 0.986   5.49
 3.03 Intr + 106903 107181  279  0  0   53  115   173 0.882  14.17
 3.04 Intr + 109223 109369  147  1  0   65   88   121 0.999  10.23
 3.05 Intr + 111078 111227  150  2  0   49   98    52 0.766   2.66
 3.06 Intr + 113105 113238  134  1  2   97   87   112 0.999  11.44
 3.07 Intr + 126551 126750  200  2  2   26   87   154 0.879   8.09
 3.08 Intr + 142357 142466  110  2  2   88   85    67 0.731   6.40
 3.09 Intr + 148715 148735   21  1  0  137   72    13 0.501   2.34
 3.10 Intr + 159840 159963  124  2  1   98   91    64 0.923   7.86
 3.11 Intr + 163467 163617  151  1  1   34   41   147 0.995   3.82
 3.12 Intr + 167774 167871   98  2  2   75   97    76 0.976   6.85
 3.13 Intr + 171834 172079  246  1  0   75   58   175 0.981  10.63
 3.14 Intr + 173176 173380  205  2  1   77  111    70 0.981   6.46
 3.15 Intr + 175081 175328  248  1  2   52   95    82 0.958   2.40
 3.16 Intr + 177505 177680  176  2  2  104   68    75 0.952   6.76
 3.17 Term + 179588 179758  171  1  0   56   48   107 0.908   1.33
 3.18 PlyA + 180009 180014    6                               1.05

 4.00 Prom + 180495 180534   40                              -3.86
 4.01 Init + 181301 181385   85  1  1   76  115    43 0.432   6.78
 4.02 Term + 189753 189931  179  1  2   55   49   149 0.511   5.55
 4.03 PlyA + 190507 190512    6                               1.05

 5.00 Prom + 197402 197441   40                              -4.26
 5.01 Init + 207033 207132  100  2  1  104   50    56 0.548   4.06
 5.02 Intr + 209112 209229  118  1  1  130   77    35 0.985   6.12
 5.03 Intr + 214605 214658   54  0  0   78   77    43 0.529   0.29
 5.04 Intr + 216519 216694  176  0  2   97   36   137 0.954   8.98
 5.05 Term + 217000 217070   71  2  2  123   54    29 0.962   1.10
 5.06 PlyA + 217587 217592    6                              -0.45

 6.07 PlyA - 217614 217609    6                               1.05
 6.06 Term - 218617 217716  902  2  2  119   41  2185 0.526 209.41
 6.05 Intr - 240398 240327   72  0  0   86   44    64 0.002   1.18
 6.04 Intr - 260263 260239   25  1  1   85  100    43 0.412   2.80
 6.03 Intr - 266561 266482   80  0  2  103   33    65 0.265   1.77
 6.02 Intr - 267465 266750  716  2  2  -12   71   960 0.388  75.38
 6.01 Intr - 276538 276420  119  1  2   74   82    48 0.200   2.06

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +   3309   3422  114  2  0   79   50   121 0.917   5.97


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:47303192_47582946|GENSCAN_predicted_peptide_1|89_aa
XAPVLVALGQRPAAQEKPSSCWTSGPNCEWFLTHHPLLQHAWKMPLGEKEQRVYGDRMKY
HSGSWMAVLKQVLHMRTFSPAHDVDIEDG

>gi568815596f:47303192_47582946|GENSCAN_predicted_CDS_1|270_bp
nnggctcctgtgctcgtggccctaggacagcgacctgcagcccaagagaaaccatcctcc
tgttggacttctgggcccaattgcgaatggttccttactcaccacccactacttcaacat
gcctggaaaatgccactaggggagaaagaacagagggtttatggggatcgtatgaagtac
cacagtggttcctggatggcagtccttaaacaggtgctacacatgaggacgttttcacca
gcccacgatgtggacatagaagatggatag

>gi568815596f:47303192_47582946|GENSCAN_predicted_peptide_2|334_aa
MAPPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICS
KLAAKCLVMKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTSMCWCVN
TAGVRRTDKDTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPKF
ITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNGEQL
DLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYEKA
EAQKRPGEATPCCKSQIMEQPWMLQEPVKPGHQS

>gi568815596f:47303192_47582946|GENSCAN_predicted_CDS_2|1005_bp
atggcgcccccgcaggtcctcgcgttcgggcttctgcttgccgcggcgacggcgactttt
gccgcagctcaggaagaatgtgtctgtgaaaactacaagctggccgtaaactgctttgtg
aataataatcgtcaatgccagtgtacttcagttggtgcacaaaatactgtcatttgctca
aagctggctgccaaatgtttggtgatgaaggcagaaatgaatggctcaaaacttgggaga
agagcaaaacctgaaggggccctccagaacaatgatgggctttatgatcctgactgcgat
gagagcgggctctttaaggccaagcagtgcaacggcacctccatgtgctggtgtgtgaac
actgctggggtcagaagaacagacaaggacactgaaataacctgctctgagcgagtgaga
acctactggatcatcattgaactaaaacacaaagcaagagaaaaaccttatgatagtaaa
agtttgcggactgcacttcagaaggagatcacaacgcgttatcaactggatccaaaattt
atcacgagtattttgtatgagaataatgttatcactattgatctggttcaaaattcttct
caaaaaactcagaatgatgtggacatagctgatgtggcttattattttgaaaaagatgtt
aaaggtgaatccttgtttcattctaagaaaatggacctgacagtaaatggggaacaactg
gatctggatcctggtcaaactttaatttattatgttgatgaaaaagcacctgaattctca
atgcagggtctaaaagctggtgttattgctgttattgtggttgtggtgatagcagttgtt
gctggaattgttgtgctggttatttccagaaagaagagaatggcaaagtatgagaaggct
gaggcccagaagcgtcctggagaagccaccccatgctgcaagagccagatcatggagcag
ccctggatgctgcaggagcctgtcaagccaggacaccagagctag

>gi568815596f:47303192_47582946|GENSCAN_predicted_peptide_3|941_aa
MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKT
QGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLA
YKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQD
LNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVNSVNILVENHEFLVKPS
FDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVL
RNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQ
TLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPN
DVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVG
AGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK
IGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAEL
ANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKVKQ
MPFTEMSEENITIKLKQLKAEVIAKNNSFVNEIISRIKVTT

>gi568815596f:47303192_47582946|GENSCAN_predicted_CDS_3|2826_bp
atggcggtgcagccgaaggagacgctgcagttggagagcgcggccgaggtcggcttcgtg
cgcttctttcagggcatgccggagaagccgaccaccacagtgcgccttttcgaccggggc
gacttctatacggcgcacggcgaggacgcgctgctggccgcccgggaggtgttcaagacc
cagggggtgatcaagtacatggggccggcaggagcaaagaatctgcagagtgttgtgctt
agtaaaatgaattttgaatcttttgtaaaagatcttcttctggttcgtcagtatagagtt
gaagtttataagaatagagctggaaataaggcatccaaggagaatgattggtatttggca
tataaggcttctcctggcaatctctctcagtttgaagacattctctttggtaacaatgat
atgtcagcttccattggtgttgtgggtgttaaaatgtccgcagttgatggccagagacag
gttggagttgggtatgtggattccatacagaggaaactaggactgtgtgaattccctgat
aatgatcagttctccaatcttgaggctctcctcatccagattggaccaaaggaatgtgtt
ttacccggaggagagactgctggagacatggggaaactgagacagataattcaaagagga
ggaattctgatcacagaaagaaaaaaagctgacttttccacaaaagacatttatcaggac
ctcaaccggttgttgaaaggcaaaaagggagagcagatgaatagtgctgtattgccagaa
atggagaatcaggttgcagtttcatcactgtctgcggtaatcaagtttttagaactctta
tcagatgattccaactttggacagtttgaactgactacttttgacttcagccagtatatg
aaattggatattgcagcagtcagagcccttaacctttttcagggttctgttgaagatacc
actggctctcagtctctggctgccttgctgaataagtgtaaaacccctcaaggacaaaga
cttgttaaccagtggattaagcagcctctcatggataagaacagaatagaggagagattg
aatttagtggaagcttttgtagaagatgcagaattgaggcagactttacaagaagattta
cttcgtcgattcccagatcttaaccgacttgccaagaagtttcaaagacaagcagcaaac
ttacaagattgttaccgactctatcagggtataaatcaactacctaatgttatacaggct
ctggaaaaacatgaaggaaaacaccagaaattattgttggcagtttttgtgactcctctt
actgatcttcgttctgacttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcaggtaaacagtgttaacatcctggtggaaaaccatgaattccttgtaaaaccttca
tttgatcctaatctcagtgaattaagagaaataatgaatgacttggaaaagaagatgcag
tcaacattaataagtgcagccagagatcttggcttggaccctggcaaacagattaaactg
gattccagtgcacagtttggatattactttcgtgtaacctgtaaggaagaaaaagtcctt
cgtaacaataaaaactttagtactgtagatatccagaagaatggtgttaaatttaccaac
agcaaattgacttctttaaatgaagagtataccaaaaataaaacagaatatgaagaagcc
caggatgccattgttaaagaaattgtcaatatttcttcaggctatgtagaaccaatgcag
acactcaatgatgtgttagctcagctagatgctgttgtcagctttgctcacgtgtcaaat
ggagcacctgttccatatgtacgaccagccattttggagaaaggacaaggaagaattata
ttaaaagcatccaggcatgcttgtgttgaagttcaagatgaaattgcatttattcctaat
gacgtatactttgaaaaagataaacagatgttccacatcattactggccccaatatggga
ggtaaatcaacatatattcgacaaactggggtgatagtactcatggcccaaattgggtgt
tttgtgccatgtgagtcagcagaagtgtccattgtggactgcatcttagcccgagtaggg
gctggtgacagtcaattgaaaggagtctccacgttcatggctgaaatgttggaaactgct
tctatcctcaggtctgcaaccaaagattcattaataatcatagatgaattgggaagagga
acttctacctacgatggatttgggttagcatgggctatatcagaatacattgcaacaaag
attggtgctttttgcatgtttgcaacccattttcatgaacttactgccttggccaatcag
ataccaactgttaataatctacatgtcacagcactcaccactgaagagaccttaactatg
ctttatcaggtgaagaaaggtgtctgtgatcaaagttttgggattcatgttgcagagctt
gctaatttccctaagcatgtaatagagtgtgctaaacagaaagccctggaacttgaggag
tttcagtatattggagaatcgcaaggatatgatatcatggaaccagcagcaaagaagtgc
tatctggaaagagagcaaggtgaaaaaattattcaggagttcctgtccaaggtgaaacaa
atgccctttactgaaatgtcagaagaaaacatcacaataaagttaaaacagctaaaagct
gaagtaatagcaaagaataatagctttgtaaatgaaatcatttcacgaataaaagttact
acgtga

>gi568815596f:47303192_47582946|GENSCAN_predicted_peptide_4|87_aa
MQIREMQVKTTMSYNFTLITIVKIKKSDGHLMAQDDCQGFNQCIHILGSKNDESAKMLIP
PLKKQKYTASTCIFHGRTESHIYAVGA

>gi568815596f:47303192_47582946|GENSCAN_predicted_CDS_4|264_bp
atgcagatcagggaaatgcaagtcaaaaccacaatgagctacaacttcacactgattacg
atagttaaaatcaaaaagtcagatggtcacctcatggcccaagatgactgccagggcttc
aaccaatgcatccacattttaggcagcaagaacgatgagagtgcaaagatgcttatccca
cctttaaagaaacaaaagtacacagcttccacttgcatcttccatgggagaactgagtca
cacatctatgctgttggagcctag

>gi568815596f:47303192_47582946|GENSCAN_predicted_peptide_5|172_aa
MERMAEREGGASLTDGITVTALAPDHLLQSSGYEPQSDRAKRPVPHFADMEKETSWGKEI
CLQSARETEPGQCSEKAASQDSGFSVATVIWLCMEKTNPLDKQYLERDSIFPDPKHIMAS
GAKYPDICKMASFGFLVLQALVPKDAAGRGALDRPPLEVAALCSVLNGLTLS

>gi568815596f:47303192_47582946|GENSCAN_predicted_CDS_5|519_bp
atggaaaggatggcagagcgggaaggaggagccagccttaccgatggcatcactgtcact
gcgctagccccagaccacctgctccagagttctggttatgaacctcagagtgacagagcc
aaaagaccagtgcctcattttgctgacatggaaaaggaaacttcgtgggggaaagagatc
tgcttgcagtcggccagagagacagaaccagggcagtgctctgagaaggctgctagccaa
gactctggattctctgtggccacagtcatatggctgtgcatggagaagacaaatcctctt
gataaacaatatttagaaagggattctatctttcctgaccccaaacacatcatggcctct
ggagccaaataccctgacatttgcaagatggcttcttttgggttcctggtgctgcaggcc
ctggttcccaaggacgcagctggcagaggtgccctggaccgcccaccattagaagtagct
gccctgtgctctgtgctaaatggactaactctgagctga

>gi568815596f:47303192_47582946|GENSCAN_predicted_peptide_6|637_aa
PIGFGLEKLLTFHLSQLQEYRGTKWREKSHRKVNHDENTRGLAAEPRARERRVRSRGSRR
GVGARRGAPLPGHPLGHGTRVWPERRGGGGGAPLSGLWEGDEGLCEGGEGLRGGPGPLAT
ILTLLLPPGGCRGPGPERRPGPGAELRTMSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHL
NEDTGRFVLLAALIGLYLVAGATVFSALESPGEAEARARWGATLRNFSAAHGVAEPELRA
FLRHYEAALAAGVRADALRPRWDFPGAFYFVGTVVSTIVREESPPLALTPGRLCSNTGRL
CDLTFKSYINIAKEQEHPAIQQSFPRVSTVSSENRKEGFGMTTPATVGGKAFLIAYGLFG
CAGTILFFNLFLERIISLLAFIMRACRERQLRRSGLLPATFRRGSALSEADSLAGWKPSV
YHVLLILGLFAVLLSCCASAMYTSVEGWDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQ
GLYRLGNFLFILLGVCCIYSLFNVISILIKQVLNWMLRKLSCRCCARCCPAPGAPLARRN
AITPGSRLRRRLAALGADPAARDSDAEGRRLSGELISMRDLTASNKVSLALLQKQLSETA
NGYPRSVCVNTRQNGFSGGVGALGIMNNRLAETSASR

>gi568815596f:47303192_47582946|GENSCAN_predicted_CDS_6|1914_bp
cctattggttttggattggaaaagttattgacatttcatctctcccaattgcaagaatat
agaggaaccaagtggagggaaaaatcccacaggaaagtcaaccatgatgagaacacaagg
ggcctagctgcggagccccgcgcccgagagcggcgggtaaggagccgcgggagccggcga
ggcgtcggggcgcgcagaggagcgcccctgcccgggcacccgctgggccacgggactcgc
gtgtggcctgagcgccggggaggaggcggaggcgcccctctgtccgggctctgggaaggc
gacgaggggctctgcgaaggcggcgaggggctccgcggcggccccggacccctggccacc
atcctcacgctcctgctcccgccggggggatgtcgtggcccgggccccgagcgccgcccc
ggccccggggctgagctccggaccatgtcctcccgcagcccccggcccccgccccgccgt
agccgccgccgcctgccgcgcccctcctgctgctgctgctgctgccgccgttcgcacctc
aacgaggacaccggccgcttcgtgctgctggcggcgctcatcggcctctacctggtggcg
ggtgccacagtcttctcggcgctcgagagccccggcgaggcggaggcgcgggcgcgctgg
ggcgccacgctgcgcaacttcagcgctgcgcacggcgtggccgagccagagctgcgcgcc
ttcctccggcactacgaggccgcgctggccgccggcgtccgcgccgacgcgctgcgcccg
cgctgggacttccccggcgccttctacttcgtgggcaccgtggtgtcaaccatagtgagg
gaagaaagcccacctctggcgctcaccccgggccgcctgtgctccaacactggccggctc
tgtgatctgacctttaagagttacatcaatattgccaaagaacaggagcacccagcaata
cagcagagcttcccacgggtttctacagtgtcttcagagaaccgcaaggagggtttcggc
atgaccacccccgcgacggtgggcgggaaggccttcctcatcgcctacgggctgttcggc
tgcgctgggaccatcctgttcttcaacctcttcctggagcgcatcatctcgctgctggcc
ttcatcatgcgcgcctgccgggagcgccagctgcgccgcagcggcctgctgcccgccacc
ttccgccgcggctccgcgctctcggaggccgacagcctggcgggctggaagccctcggtg
taccacgtgctgctcatcctgggcctgttcgccgtgctgctgtcctgctgcgcctcggcc
atgtacaccagcgtggagggctgggactacgtggactcgctctacttctgcttcgtcacc
ttcagcaccatcggcttcggggacctggtgagcagccagcacgccgcctaccggaaccag
gggctctaccgcctgggcaacttcctcttcatcctgctcggcgtgtgctgcatttactcg
ctcttcaacgtcatctccatcctcatcaagcaggtgctcaactggatgctgcgcaagctg
agctgccgctgctgcgcgcgctgctgcccggctcctggcgcgcccctggcccggcgcaat
gccatcaccccaggctcccggctgcgccgccgcctggccgcgctcggtgccgaccccgcg
gcccgcgacagcgacgccgagggccgccgcctctcgggcgagctcatctccatgcgcgac
ctcacggcctccaacaaggtgtcgctggcgctgctgcagaagcagctgtcggagacggcc
aacggctacccgcgcagcgtgtgcgtcaacacgcgccagaacggcttctcgggcggcgtg
ggcgcgctgggcatcatgaacaaccggctggccgagaccagcgcctccaggtag