GENSCAN 1.0	Date run:  5-Nov-116	Time: 02:20:11

Sequence gi568815597r:227632395_227835195 : 202801 bp : 45.30% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    442    540   99  0  0   93   89    82 0.520   7.07
 1.02 Intr +  14150  14276  127  1  1  117   68    57 0.655   6.85
 1.03 Term +  21966  23434 1469  1  2   57   42  1233 0.498 106.42
 1.04 PlyA +  23475  23480    6                               1.05

 2.06 PlyA -  23593  23588    6                               1.05
 2.05 Term -  27183  26953  231  0  0   13   44   202 0.215   4.77
 2.04 Intr -  31619  31548   72  2  0   67   74    86 0.198   4.70
 2.03 Intr -  48781  48767   15  1  0  142   81    10 0.021   1.44
 2.02 Intr -  73723  73641   83  2  2   74   92    70 0.976   5.36
 2.01 Init -  74305  74167  139  1  1   48   92   160 0.890  12.70
 2.00 Prom -  77044  77005   40                              -7.36

 3.00 Prom +  77477  77516   40                              -6.76
 3.01 Init +  77804  77924  121  1  1   68   74     7 0.255  -2.35
 3.02 Intr +  81583  81843  261  2  0  101   64   108 0.726   7.16
 3.03 Term +  82132  82514  383  2  2   56   42   206 0.971   7.80
 3.04 PlyA +  83290  83295    6                               1.05

 4.07 PlyA -  85578  85573    6                               1.05
 4.06 Term - 100282  99998  285  1  0   98   42   309 0.891  22.70
 4.05 Intr - 100633 100487  147  1  0   99   75   216 0.858  21.83
 4.04 Intr - 101287 101020  268  0  1   93   55   287 0.857  23.43
 4.03 Intr - 101689 101513  177  0  0   56   81   280 0.785  23.13
 4.02 Intr - 102422 102257  166  0  1   62   95    95 0.983   6.62
 4.01 Init - 103017 102618  400  0  1   50   52   534 0.999  40.83
 4.00 Prom - 106951 106912   40                              -8.06

 5.00 Prom + 108156 108195   40                              -8.46
 5.01 Init + 110535 110576   42  2  0   96   44    80 0.256   3.05
 5.02 Intr + 115298 115839  542  1  2   89   80   656 0.519  56.60
 5.03 Intr + 121353 121514  162  0  0   69   57   114 0.942   5.49
 5.04 Intr + 126850 127091  242  1  2   77   92   298 0.451  26.29
 5.05 Intr + 134565 134689  125  1  2  108  110    20 0.013   6.50
 5.06 Term + 148133 148279  147  1  0  112   50   172 0.988  13.70
 5.07 PlyA + 148810 148815    6                               1.05

 6.00 Prom + 149626 149665   40                             -11.63
 6.01 Init + 149966 150198  233  1  2  111   94    93 0.784   7.95
 6.02 Intr + 153869 153939   71  2  2  104   77    32 0.686   2.53
 6.03 Term + 153989 154209  221  0  2   26   48   171 0.233   4.10
 6.04 PlyA + 158096 158101    6                               1.05

 7.00 Prom + 159765 159804   40                              -5.96
 7.01 Init + 162175 162240   66  0  0   60   90   115 0.731   7.98
 7.02 Intr + 164896 165066  171  0  0  126  111    15 0.614   7.74
 7.03 Term + 165825 166028  204  2  0   52   39   101 0.263  -1.03
 7.04 PlyA + 166519 166524    6                               1.05

 8.00 Prom + 172138 172177   40                              -4.16
 8.01 Init + 183344 183470  127  1  1   86   57   230 0.739  18.02
 8.02 Intr + 183696 183858  163  1  1  106  115   196 0.989  23.13
 8.03 Intr + 184815 185086  272  0  2   93   97   252 0.791  23.79
 8.04 Term + 189288 189337   50  1  2   66   42    71 0.339  -2.23
 8.05 PlyA + 191413 191418    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -   7148   7015  134  2  2   72   93    90 0.860   7.52
S.002 Init + 141152 141299  148  1  1   71   68   108 0.805   5.35
S.003 Term + 143395 143540  146  2  2  118   55    76 0.919   5.37


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:227632395_227835195|GENSCAN_predicted_peptide_1|564_aa
MVAGRSQMAASLLFSDLGFLASWIPWNGTLGYVGLLAFSDVVIEFSPEEWACLDPAQRNL
YRDVMFENYRNLVSLDLLPEQDMKDLCQKVTLTRHRSWGLDNLHLVKDWRTVNEGKGQKE
YCNRLTQCSSTKSKIFQCIECGRNFSWRSILTEHKRIHTGEKPYKCEECGKVFNRCSNLT
KHKRIHTGEKPYKCDECGKVFNWWSQLTNHKKIHTGEKPYKCDECDKVFNWWSQLTSHKK
IHSGEKPYPCEECGKAFTQFSNLTQHKRIHTGEKPYKCKECCKAFNKFSNLTQHKRIHTG
EKPYKCEECGNVFNECSHLTRHRRIHTGEKPYKCEECGKAFTQFASLTRHKRIHTGEKPY
QCEECGKTFNRCSHLSSHKRIHTGEKPYKCEECGRTFTQFSNLTQHKRIHTGEKPYKCKE
CGKAFNKFSSLTQHRRIHTGVKPYKCEECGKVFKQCSHLTSHKRIHTGEKPYKCKECGKA
FYQSSILSKHKRIHTEEKPYKCEECGKAFNQFSSLTRHKRIHTGEKRYKCKECGKGFYQS
SIHSKYKRIYTGEEPDKCKKCGSL

>gi568815597r:227632395_227835195|GENSCAN_predicted_CDS_1|1695_bp
atggtggcgggccgctcccaaatggcagcaagccttttgttctctgacctggggttcttg
gcctcatggattccttggaatggaaccttgggctatgtgggactactggcattcagtgat
gtggtcatagaattctctccagaggagtgggcatgcctggaccctgcccagcgaaatttg
tatagggatgtgatgttcgagaactacagaaacctggtctccctggaccttttgccagag
caggatatgaaagatttatgccaaaaagtgacactgacaagacatagaagctggggcctt
gacaatttgcacttagtgaaagactggagaactgtgaatgaaggtaaggggcagaaagaa
tattgcaatagacttactcaatgttcatcaactaaaagcaaaatctttcaatgtattgaa
tgtggcagaaattttagctggaggtcaatccttactgaacataagagaattcatactgga
gagaagccatacaaatgtgaagaatgtggcaaagttttcaatcgatgttcaaacctaaca
aaacataaaagaattcatactggagagaaaccctacaaatgtgacgaatgtggcaaagtt
tttaattggtggtcacaactaactaaccataagaaaattcatactggagagaaaccctac
aaatgtgatgaatgtgacaaagtttttaattggtggtcacaactaactagccataagaaa
attcatagtggagagaaaccatacccatgtgaagaatgtggcaaagcctttacccagttc
tcaaaccttacacaacataagagaattcatactggagagaaaccctacaaatgcaaagaa
tgttgcaaagcctttaacaagttctcaaaccttactcaacataagagaattcatactgga
gagaaaccttacaagtgtgaagaatgtggcaacgtttttaatgagtgctcacacctaact
agacataggagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcc
tttacacagtttgcaagccttactcgtcataaaagaattcatactggagaaaaaccctac
caatgtgaagaatgtggcaaaacttttaatcggtgttcacacctaagtagccataagaga
attcatactggagagaaaccctacaaatgtgaagaatgtggcagaacctttactcaattc
tcaaacctcactcagcataaaagaattcatactggagagaaaccctacaaatgcaaagaa
tgtggcaaagcgtttaacaagttctcaagccttactcaacataggagaattcatactgga
gtgaaaccctacaaatgtgaagaatgtgggaaagtttttaaacagtgctctcacctaact
agccataagagaattcatactggagagaaaccctacaaatgtaaagaatgtggcaaagct
ttttaccaatcctcaatccttagtaagcataagagaattcatactgaagagaaaccctac
aaatgtgaagaatgtggcaaagcctttaaccagttctcaagccttactcgtcataaaaga
attcatactggagagaaacgctacaaatgtaaagaatgtggaaaaggtttttaccaatcc
tcaatccatagtaagtataagagaatttatactggagaggaacctgacaaatgtaaaaaa
tgtggcagtctttaa

>gi568815597r:227632395_227835195|GENSCAN_predicted_peptide_2|179_aa
MPLQELVSFEDVAVGFTWEEWQDLDDAQRTLYRDMMLETYSSLVSLGYHITKPEVIFNLE
QGEPWMVEDTRASQDISELSSMQEINKKLFDGSNYSISLDEGQHVLEPAQNMGVTKGLYG
FHFKFGTPGVSGADADHMDDIKEAGGANSPISGHGVNTEIRFASKITKEIFQSKSSLDL

>gi568815597r:227632395_227835195|GENSCAN_predicted_CDS_2|540_bp
atgccattacaggagttggtgtcctttgaggatgtggctgtgggcttcacctgggaagag
tggcaggacttggatgatgctcaaaggactctgtacagggacatgatgctggagacctac
agcagcttggtgtccttggggtaccacattaccaaacctgaggtgatcttcaacctggag
caaggagaaccttggatggtagaggacaccagagcctcccaggatatttctgaactgagc
tccatgcaggagatcaataaaaagctgtttgatgggtccaactactccatctctttggat
gaagggcagcatgttctagaaccagcacagaacatgggagtcaccaaaggactctatggc
tttcactttaagtttgggacacctggagtttctggtgctgatgctgatcatatggacgac
attaaagaagcaggtggtgctaacagtcccatctctggccatggtgtgaacacagaaatc
aggtttgcatccaaaatcaccaaggaaatatttcaatccaaaagctctctagatctctga

>gi568815597r:227632395_227835195|GENSCAN_predicted_peptide_3|254_aa
MTLNEHAAFKHLFNKGHLAPPLIHSTLSGHSTCFREHRVGALRNPGSPDEWVSPKCSKPP
SPRDSQSAMLNGSCFLCHPTGSDPPAGAVRYPIQERSYWHQVGVPQGQRFQRKEQALAVL
QARVTSPARAQNWTEDEMDEFTEVGFRRRVITNFTEVKEHVLTQCKEVTNLKKRLEELLP
RITSLEMYINDRMELKNTARELRGAYTSINSPINQVEEKISEMEDYLAEIRQADKIREKR
IKRNEQNLQEMWNY

>gi568815597r:227632395_227835195|GENSCAN_predicted_CDS_3|765_bp
atgactcttaacgagcatgctgccttcaagcatctgtttaacaaaggacatcttgcacca
cccttaatccattcaaccctgagtggacacagcacatgtttcagagagcacagggttggg
gctctgaggaatccgggcagcccagacgagtgggtttcccccaaatgcagcaaacctcct
tcaccaagggacagccaaagtgctatgttaaatgggtcctgcttcctgtgccacccaact
gggtcagaccccccagcaggagctgtcagatatcctatacaggagcgttcctactggcat
caggttggtgtccctcaaggtcagagattccagagaaaggagcaggccttggctgttctc
caggctcgagtgacatctccagcaagggcacagaactggacagaggatgagatggacgaa
ttcacagaagtaggcttcagaaggagggtaataacaaacttcactgaggtaaaggagcat
gttctaactcaatgcaaagaagttacaaaccttaaaaaaaggttagaggagctgctacct
agaataaccagtttagagatgtacataaatgaccggatggagctgaaaaacacagcaaga
gaacttcgtggagcatatacaagtatcaatagcccaatcaatcaagtagaagaaaaaata
tcagagatggaagactatcttgctgaaataaggcaggcagacaagattagagaaaaaaga
ataaaaaggaatgaacaaaacctccaagaaatgtggaactattaa

>gi568815597r:227632395_227835195|GENSCAN_predicted_peptide_4|480_aa
MRAGPEPQALAGQKRGALRLLVPRLVLTVSAPAEVRRRVLRPVLSWMDRETRALADSHFR
GLGVDVPGVGQAPGRVAFVSEPGAFSYADFVRGFLLPNLPCVFSSAFTQGWGSRRRWVTP
AGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYITYWKEYIQAGYSSPRGCL
YLKDWHLCSLLVPHVLSVVPLRPPHRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRFV
YAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEALRDRHGNLPYDVTSPALCD
THLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMWRFL
QQELCAVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKVIAEKRLLVLREAAA
EDGAGLGFEQAAFDVGRITEVLASLVAHPDFQRVDTSAFSPQPKELLQQLREAVDAAAAP

>gi568815597r:227632395_227835195|GENSCAN_predicted_CDS_4|1443_bp
atgcgtgcaggcccggagccccaggcgctggcggggcagaaacgcggcgccctgcgtctt
ctggttccgaggctggtcctcaccgtttccgctccggcggaagtgaggaggagggtcctt
cgacccgtgctgagctggatggaccgcgagacgcgcgccctcgccgacagccacttccga
ggcctgggggtcgatgtccccggcgtcggccaggctccgggccgggtagccttcgtctcg
gagccgggcgccttctcctacgccgactttgtgcggggcttcttgctgcccaacctgccc
tgcgtgttttccagcgccttcacgcagggctggggcagccggcggcgctgggtgacgccc
gcggggaggcccgacttcgaccacctgctacggacctacggagacgtggttgtaccagtt
gcaaactgtggggtccaggaatacaactcgaaccccaaagagcacatgactctcagagac
tacatcacctactggaaagagtacatacaggcgggctactcctctcccaggggctgtctc
tacctcaaagactggcacttgtgcagtctcctcgtgcctcacgtgctgtcggtggtgccc
ttgcgccctcctcacagggactttccggtggaggacgttttcaccctgcctgtgtacttc
tcgtccgactggctgaatgagttctgggatgcactggatgtggatgactaccgctttgtc
tacgcggggcctgcgggcagctggtccccgttccatgctgacatcttccgctccttcagc
tggtctgtcaatgtctgtgggaggaagaagtggctcctcttccccccagggcaggaagag
gccctgcgggaccgccacggcaacctgccctacgacgtgacctccccagcactctgcgac
acacacctgcacccacggaaccagcttgctggcccacccttggagatcacgcaggaagcg
ggcgagatggtgtttgtgcccagtggctggcaccaccaggtgcacaacctggatgacacc
atctccatcaaccacaactgggtcaatggcttcaacctggccaacatgtggcgcttcttg
cagcaggagctatgcgccgtgcaggaggaggtcagcgagtggagggactccatgcccgac
tggcaccaccactgccaggtcatcatgaggtcctgctcgggcatcaactttgaagagttt
taccacttcctcaaggtcatcgctgagaagaggctcctggtcctgagggaggcagccgct
gaggacggtgctgggttgggtttcgaacaggcagcctttgatgttgggcgcatcacagag
gtgctggcctccttggttgcgcaccccgacttccagagagtggacaccagcgcgttctca
ccacagcccaaagagctgctgcagcagctgagagaggctgttgatgctgctgcggcccca
tag

>gi568815597r:227632395_227835195|GENSCAN_predicted_peptide_5|419_aa
MGPVCGLPTLAMALRQKRPGPWRTQTQEQMSRDVCIHTWPCTYYLEPKRRWVTGQLSLTS
LSLRFMTDSTGEILVSFPLSSIVEIKKEASHFIFSSITILEKGHAKHWFSSLRPSRNVVF
SIIEHFWRELLLSQPGAVADASVPRTRGEELTGLMAGSQKRLEDTARVLHHQGQQLDSVM
RGLDKMESDLEVADRAFNRALKPATEATAGFSALLPKPPRGAYRQAGYGSPTPRQHLGVD
VYCSWSPSGFEREDVDDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQFSK
KMELLEDALVLRSARTSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPA
LSEADTQELTQILRRMKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMKRLT

>gi568815597r:227632395_227835195|GENSCAN_predicted_CDS_5|1260_bp
atgggtcctgtgtgtggcctgccgaccctcgccatggccctgaggcagaagaggcctgga
ccttggcgcacacagacccaggaacagatgagcagggatgtctgcatccacacctggccg
tgcacctactacctggagcccaagaggcgatgggttactggacagctgtccttaacatcg
ctgtcgctcaggttcatgactgacagcactggagagattctggtcagcttccccctctcc
agcatagttgagatcaagaaggaggcttcacattttatcttcagctccatcaccatcctg
gagaagggccatgccaagcactggttcagctccctgcggccaagtcgaaatgtggtcttc
agcatcatcgagcatttctggagggagctgctgctgtctcagcctggagccgtggcagac
gcatctgtcccaaggacccggggcgaggagctgacgggactcatggctggatcccagaaa
cgcctggaggacacggcgagggtcctgcaccaccagggccagcagctggacagcgtcatg
agaggcctggacaagatggagtcagacctggaggtggcggacagggcattcaacagggca
ctgaagccagccactgaagccacggctggcttcagtgccctgctgcccaaacctcctagg
ggagcatacagacaggcaggctatgggtctccaaccccacgacagcatctaggggtggat
gtttactgctcctggagccccagtgggtttgaaagagaagacgtggacgacatcaaggtc
cactcaccttacgaaattagcatccgccagcggtttattggaaagccagacatggcctat
cgtttgatatctgccaagatgccagaggttatccccattttagaagtgcagttcagcaag
aagatggagctgttagaagatgcattggtgctcagaagcgcaagaacctcttcccccgca
gagaagagctgctcagtctggcatgcagcatctgggctgatgggccgtaccctgcaccgt
gagccacccgcaggagaccaggagggcacagcactgcacctgcagacaagcctgccagcc
ctttctgaggcagatacccaggaactaacccagatcctgaggaggatgaaggggctggcc
ctggaggccgagagtgagctggagagacaagacgaagccctggatggcgttgcagcagct
gtggacagggcaaccttgaccatcgacaagcacaacaggcggatgaagaggctgacctag

>gi568815597r:227632395_227835195|GENSCAN_predicted_peptide_6|174_aa
MAPPPVSAGSRQQGLTMPAATVQTPIKPGRGCTLSSGPHSVSGVSSVPDPSLFSGLHSVG
GVSPVPDLSLSASPCNISSGADGDVLMPLLMVTCVQTSHRGGRWKARSALWRDLAAEKHV
APVIGPSGCYKFPGMAAAGWQPARKARMGQGGVAAHSNCKPQEKKGCFCSVDLL

>gi568815597r:227632395_227835195|GENSCAN_predicted_CDS_6|525_bp
atggccccccctcctgtcagtgctgggagccggcagcaagggctcaccatgcctgcagcc
accgtgcagacccccatcaagcctggaagaggctgcaccctgtcctcaggacctcacagt
gtgagtggggtctcctctgtccctgacccctcgctgttctcaggacttcacagtgtgggt
ggggtctcccctgtccctgacctctcactgtcagcaagtccttgcaatatcagctcaggg
gctgatggagatgtactgatgcctctcctgatggtcacttgtgttcagacgtcccacaga
ggtgggaggtggaaggcacgcagcgcactgtggagagaccttgctgctgagaagcacgtg
gcacctgtcataggcccctctggctgctacaagttcccgggcatggcggctgcagggtgg
cagccagcccggaaagccaggatgggccagggaggtgtggcggcccacagcaactgcaag
ccccaggaaaagaagggctgcttctgctctgttgacttgctgtga

>gi568815597r:227632395_227835195|GENSCAN_predicted_peptide_7|146_aa
MPWAATALQELEVRLASSQGAEVGAVRASRERGHRRKVGAVMAQGPPAAPAGLDNGRVCG
AMALLQDWGRFAPECSPAQRDLGPGSSGFSGAMRDALGLSRFEAWEASKMPQELRASEWG
LAGQLCTWTAGCLPFLAVGSVDPIHF

>gi568815597r:227632395_227835195|GENSCAN_predicted_CDS_7|441_bp
atgccgtgggcggccacggctctgcaggagctggaagtcaggctggcctccagtcaggga
gccgaggtgggggctgtgagagcctcgagggaaagaggacacaggaggaaggtgggtgcg
gtgatggctcagggaccacctgcagctccagctggcctggataatggcagggtctgtggg
gcaatggccctgctacaggactggggccgctttgctcctgaatgctcacctgcccagagg
gacctgggtcctgggagctctggcttcagtggagccatgcgtgatgctctaggcctgtcc
cgctttgaagcttgggaggcatctaagatgccacaggagcttcgtgcctctgagtggggc
cttgctgggcagctgtgcacctggacagcagggtgtcttccgtttctggcagtaggctct
gtggatcccattcacttctaa

>gi568815597r:227632395_227835195|GENSCAN_predicted_peptide_8|203_aa
MGPLGPSALGLLLLLLVVAPPRVAALVHRQPENQGISLTGSVACGRPSMEGKILGGVPAP
ERKWPWQVSVHYAGLHVCGGSILNEYWVLSAAHCFHRDKNIKIYDMYVGLVNLRVAGNHT
QWYEVNRVILHPTYEMYHPIGGDVALVQLKTRIVFSESVLPVCLATPEVNLTSANCWATG
WGLVSKQVFYEKLAINLIEDPCT

>gi568815597r:227632395_227835195|GENSCAN_predicted_CDS_8|612_bp
atgggcccactcgggccctctgccctgggccttctgctgctgctcctggtggtggcccct
ccccgggtcgcagcattggtccacagacagccagagaaccagggaatctccctaactggc
agcgtggcctgtggtcggcccagcatggaggggaaaatcctgggcggcgtccctgcgccc
gagaggaagtggccgtggcaggtcagcgtgcactacgcaggcctccacgtctgcggcggc
tccatcctcaatgagtactgggtgctgtcagctgcgcactgctttcacagggacaagaat
atcaaaatctatgacatgtacgtaggcctcgtaaacctcagggtggccggcaaccacacc
cagtggtatgaggtgaacagggtgatcctgcaccccacatatgagatgtaccaccccatc
ggaggtgacgtggccctggtgcagctgaagacccgcattgtgttttctgagtccgtgctc
ccggtttgccttgcaactccagaagtgaaccttaccagtgccaattgctgggctacggga
tggggactagtctcaaaacaagttttttatgagaaattggctattaatctgattgaggat
ccttgtacatga