Result of FASTA (omim) for pF1KE3504
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3504, 863 aa
  1>>>pF1KE3504     863 - 863 aa - 863 aa
Library: /omim/omim.rfq.tfa
  65951994 residues in 93482 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7055+/-0.000348; mu= 19.2791+/- 0.022
 mean_var=86.7005+/-17.673, 0's: 0 Z-trim(114.6): 149  B-trim: 487 in 1/50
 Lambda= 0.137741
 statistics sampled from 25512 (25696) to 25512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.275), width:  16
 Scan time:  5.810

The best scores are:                                      opt bits E(93482)
NP_003931 (OMIM: 603591) ubiquitin carboxyl-termin ( 863) 5891 1181.4       0
XP_016862914 (OMIM: 603591) ubiquitin carboxyl-ter ( 833) 5497 1103.0       0
XP_016862915 (OMIM: 603591) ubiquitin carboxyl-ter ( 821) 5206 1045.2       0
XP_016862916 (OMIM: 603591) ubiquitin carboxyl-ter ( 711) 4803 965.1       0
XP_011511571 (OMIM: 603591) ubiquitin carboxyl-ter ( 854) 4373 879.7       0
NP_001092006 (OMIM: 601447) ubiquitin carboxyl-ter ( 858) 3301 666.7 1.4e-190
NP_003472 (OMIM: 601447) ubiquitin carboxyl-termin ( 835) 2713 549.8 2.1e-155
NP_001332954 (OMIM: 618439) ubiquitin carboxyl-ter ( 755)  181 46.6 0.00056
NP_001332953 (OMIM: 618439) ubiquitin carboxyl-ter ( 756)  179 46.2 0.00074
NP_001273006 (OMIM: 616378) UBX domain-containing  ( 297)  159 42.0  0.0056
XP_016873363 (OMIM: 616378) UBX domain-containing  ( 297)  159 42.0  0.0056
NP_001332959 (OMIM: 618439) ubiquitin carboxyl-ter ( 437)  161 42.5  0.0057
XP_016866875 (OMIM: 618439) ubiquitin carboxyl-ter ( 440)  161 42.5  0.0057
XP_016866874 (OMIM: 618439) ubiquitin carboxyl-ter ( 440)  161 42.5  0.0057
XP_005274090 (OMIM: 616378) UBX domain-containing  ( 312)  159 42.0  0.0058
NP_056937 (OMIM: 616378) UBX domain-containing pro ( 312)  159 42.0  0.0058
NP_001332952 (OMIM: 618439) ubiquitin carboxyl-ter ( 813)  163 43.1  0.0071
NP_001332955 (OMIM: 618439) ubiquitin carboxyl-ter ( 721)  161 42.6  0.0085
NP_001073950 (OMIM: 618439) ubiquitin carboxyl-ter ( 814)  161 42.7  0.0093
NP_001332950 (OMIM: 618439) ubiquitin carboxyl-ter ( 814)  161 42.7  0.0093
NP_001332951 (OMIM: 618439) ubiquitin carboxyl-ter ( 814)  161 42.7  0.0093
XP_005267227 (OMIM: 618439) ubiquitin carboxyl-ter ( 814)  161 42.7  0.0093


>>NP_003931 (OMIM: 603591) ubiquitin carboxyl-terminal h  (863 aa)
 initn: 5891 init1: 5891 opt: 5891  Z-score: 6324.7  bits: 1181.4 E(93482):    0
Smith-Waterman score: 5891; 100.0% identity (100.0% similar) in 863 aa overlap (1-863:1-863)

               10        20        30        40        50        60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE3 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE3 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
              790       800       810       820       830       840

              850       860   
pF1KE3 KVCASERPPKDLGYMYFYRRIPS
       :::::::::::::::::::::::
NP_003 KVCASERPPKDLGYMYFYRRIPS
              850       860   

>>XP_016862914 (OMIM: 603591) ubiquitin carboxyl-termina  (833 aa)
 initn: 5497 init1: 5497 opt: 5497  Z-score: 5901.7  bits: 1103.0 E(93482):    0
Smith-Waterman score: 5497; 100.0% identity (100.0% similar) in 807 aa overlap (57-863:27-833)

         30        40        50        60        70        80      
pF1KE3 LLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQ
                                     ::::::::::::::::::::::::::::::
XP_016     MKYKSSLFRTARCRSFASSAGQSAGRNSEGGLYVCMNTFLAFGREHVERHFRKTGQ
                   10        20        30        40        50      

         90       100       110       120       130       140      
pF1KE3 SVYMHLKRHVREKVRGASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPDHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVYMHLKRHVREKVRGASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPDHY
         60        70        80        90       100       110      

        150       160       170       180       190       200      
pF1KE3 EIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLTQLDNGVRIPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLTQLDNGVRIPP
        120       130       140       150       160       170      

        210       220       230       240       250       260      
pF1KE3 SGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGTITPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGTITPD
        180       190       200       210       220       230      

        270       280       290       300       310       320      
pF1KE3 GADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDNDIKLRVSEWEVIQESGTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDNDIKLRVSEWEVIQESGTK
        240       250       260       270       280       290      

        330       340       350       360       370       380      
pF1KE3 LKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQ
        300       310       320       330       340       350      

        390       400       410       420       430       440      
pF1KE3 MTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQ
        360       370       380       390       400       410      

        450       460       470       480       490       500      
pF1KE3 DAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAME
        420       430       440       450       460       470      

        510       520       530       540       550       560      
pF1KE3 AATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFSEPENVDDFWSSALQAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFSEPENVDDFWSSALQAKS
        480       490       500       510       520       530      

        570       580       590       600       610       620      
pF1KE3 AGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEEL
        540       550       560       570       580       590      

        630       640       650       660       670       680      
pF1KE3 PDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVA
        600       610       620       630       640       650      

        690       700       710       720       730       740      
pF1KE3 FNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQA
        660       670       680       690       700       710      

        750       760       770       780       790       800      
pF1KE3 IQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPRVKDGSGTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPRVKDGSGTY
        720       730       740       750       760       770      

        810       820       830       840       850       860   
pF1KE3 ELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS
        780       790       800       810       820       830   

>>XP_016862915 (OMIM: 603591) ubiquitin carboxyl-termina  (821 aa)
 initn: 5206 init1: 5206 opt: 5206  Z-score: 5589.3  bits: 1045.2 E(93482):    0
Smith-Waterman score: 5506; 95.1% identity (95.1% similar) in 863 aa overlap (1-863:1-821)

               10        20        30        40        50        60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
XP_016 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSP----
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
                                             ::::::::::::::::::::::
XP_016 --------------------------------------KVRGASGGALPKRRNSKIFLDL
                                               60        70        

              130       140       150       160       170       180
pF1KE3 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
       80        90       100       110       120       130        

              190       200       210       220       230       240
pF1KE3 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
      140       150       160       170       180       190        

              250       260       270       280       290       300
pF1KE3 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
      200       210       220       230       240       250        

              310       320       330       340       350       360
pF1KE3 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
      260       270       280       290       300       310        

              370       380       390       400       410       420
pF1KE3 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
      320       330       340       350       360       370        

              430       440       450       460       470       480
pF1KE3 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
      380       390       400       410       420       430        

              490       500       510       520       530       540
pF1KE3 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
      440       450       460       470       480       490        

              550       560       570       580       590       600
pF1KE3 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
      500       510       520       530       540       550        

              610       620       630       640       650       660
pF1KE3 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
      560       570       580       590       600       610        

              670       680       690       700       710       720
pF1KE3 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
      620       630       640       650       660       670        

              730       740       750       760       770       780
pF1KE3 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
      680       690       700       710       720       730        

              790       800       810       820       830       840
pF1KE3 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
      740       750       760       770       780       790        

              850       860   
pF1KE3 KVCASERPPKDLGYMYFYRRIPS
       :::::::::::::::::::::::
XP_016 KVCASERPPKDLGYMYFYRRIPS
      800       810       820 

>>XP_016862916 (OMIM: 603591) ubiquitin carboxyl-termina  (711 aa)
 initn: 4803 init1: 4803 opt: 4803  Z-score: 5157.4  bits: 965.1 E(93482):    0
Smith-Waterman score: 4803; 100.0% identity (100.0% similar) in 704 aa overlap (160-863:8-711)

     130       140       150       160       170       180         
pF1KE3 DYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVS
                                     ::::::::::::::::::::::::::::::
XP_016                        MRMALCQVTIACDAVLSSKSPYRKQDPDTWENELPVS
                                      10        20        30       

     190       200       210       220       230       240         
pF1KE3 KYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHY
        40        50        60        70        80        90       

     250       260       270       280       290       300         
pF1KE3 RDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDND
       100       110       120       130       140       150       

     310       320       330       340       350       360         
pF1KE3 IKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLP
       160       170       180       190       200       210       

     370       380       390       400       410       420         
pF1KE3 RIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMF
       220       230       240       250       260       270       

     430       440       450       460       470       480         
pF1KE3 KAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKV
       280       290       300       310       320       330       

     490       500       510       520       530       540         
pF1KE3 RYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFS
       340       350       360       370       380       390       

     550       560       570       580       590       600         
pF1KE3 EPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLL
       400       410       420       430       440       450       

     610       620       630       640       650       660         
pF1KE3 DINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLE
       460       470       480       490       500       510       

     670       680       690       700       710       720         
pF1KE3 ACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPP
       520       530       540       550       560       570       

     730       740       750       760       770       780         
pF1KE3 EEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANII
       580       590       600       610       620       630       

     790       800       810       820       830       840         
pF1KE3 SEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPP
       640       650       660       670       680       690       

     850       860   
pF1KE3 KDLGYMYFYRRIPS
       ::::::::::::::
XP_016 KDLGYMYFYRRIPS
       700       710 

>>XP_011511571 (OMIM: 603591) ubiquitin carboxyl-termina  (854 aa)
 initn: 4373 init1: 4373 opt: 4373  Z-score: 4694.4  bits: 879.7 E(93482):    0
Smith-Waterman score: 5793; 98.8% identity (98.8% similar) in 863 aa overlap (1-863:1-854)

               10        20        30        40        50        60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
       ::::::::::::::::::::::::::::::::::::::::          ::::::::::
XP_011 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSK---------ASDIDESSVMQ
              610       620       630       640                650 

              670       680       690       700       710       720
pF1KE3 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
             660       670       680       690       700       710 

              730       740       750       760       770       780
pF1KE3 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
             720       730       740       750       760       770 

              790       800       810       820       830       840
pF1KE3 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
             780       790       800       810       820       830 

              850       860   
pF1KE3 KVCASERPPKDLGYMYFYRRIPS
       :::::::::::::::::::::::
XP_011 KVCASERPPKDLGYMYFYRRIPS
             840       850    

>>NP_001092006 (OMIM: 601447) ubiquitin carboxyl-termina  (858 aa)
 initn: 3463 init1: 1583 opt: 3301  Z-score: 3543.1  bits: 666.7 E(93482): 1.4e-190
Smith-Waterman score: 3598; 60.6% identity (84.0% similar) in 862 aa overlap (26-863:7-858)

               10        20        30        40        50        60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
                                : :.  .::::::..::::.:.:::::.:.:.:::
NP_001                    MAELSEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEG
                                  10        20        30        40 

               70        80        90       100         110        
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRG-ASG-GALPKRRNSKIFL
       :::.::::::.::...::::: :::: ::.::.:  : : .  :.: :  :... ... .
NP_001 GLYICMNTFLGFGKQYVERHFNKTGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAI
              50        60        70        80        90       100 

      120       130       140       150       160           170    
pF1KE3 DLDTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALV----TIACDAVLSSKSPY
        ..   ::. . .: ....:.::.::. :::  ..  :: .:    : : .:.::. :  
NP_001 GVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSAS
             110       120       130       140       150       160 

          180        190       200       210       220       230   
pF1KE3 RKQDPDTWENEL-PVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGK
       :::. ..:..:.  :::.: .: :::: .:::: ::::..::.::::::::::::.:::.
NP_001 RKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGR
             170       180       190       200       210       220 

           240       250       260       270       280       290   
pF1KE3 WFFDSSGGNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGI
        .::.::::.::.::::. ::::::::::::::::::::..:.. :::: ::.::.::::
NP_001 RYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGI
             230       240       250       260       270       280 

           300       310         320       330       340       350 
pF1KE3 DMLHMHGTENGLQDNDIKL--RVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVM
       :::.:. :.. . . .: .  :..:::.:::::. :::..::::::..::::::::.::.
NP_001 DMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVV
             290       300       310       320       330       340 

             360       370       380       390       400       410 
pF1KE3 QAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQ
       :..::::.::: :: .: .::. .: ::::::.::..:::::::::.::::  .:   :.
NP_001 QVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER
             350       360       370       380       390       400 

             420       430       440       450       460       470 
pF1KE3 VMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSD
       :   :.:  :.::.::::::...:.:::::.:::::::::::::.:.::::  .::::..
NP_001 V--PEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNE
               410       420       430       440       450         

             480       490       500       510       520       530 
pF1KE3 VFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPL
       ::::::::.:.:  :.::.::.::::.::::: :.:: ::.::. ::  .:.:: ..  :
NP_001 VFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMAL
     460       470       480       490       500       510         

             540       550       560       570       580       590 
pF1KE3 PELVRAKIPFSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFG
       ::::::..:::.::.:.. ::.::::::.::::::..:::.::::::.:::.::::::::
NP_001 PELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFG
     520       530       540       550       560       570         

             600       610       620       630       640           
pF1KE3 LDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLM---NQLI
       :::::::.::::.::. :::..::. ::::::::::::.::.: ::. :  :    :.  
NP_001 LDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGFYGNEDE
     580       590       600       610       620       630         

               650         660       670       680       690       
pF1KE3 D---------PSD--IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEP
       :         :..  .::: ..::.:::::..:::::::.::: :::.:.::.. ::..:
NP_001 DSFCSPHFSSPTSPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP
     640       650       660       670       680       690         

       700       710       720       730       740       750       
pF1KE3 DFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNL
       :::.:: .:: .: .:..:..       . :::. :. :.::::.:.::..:::::::.:
NP_001 DFANPLILPGSSGPGSTSAAA-------DPPPEDCVTTIVSMGFSRDQALKALRATNNSL
     700       710       720              730       740       750  

       760       770       780        790       800       810      
pF1KE3 ERALDWIFSHPEFEEDSDFVIEM-ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMG
       :::.:::::: . . :.. .... :. . :. :::. : ::.:.:: : :.:::::::::
NP_001 ERAVDWIFSHID-DLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMG
            760        770       780       790       800       810 

        820       830       840       850       860   
pF1KE3 TSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS
       :::: :::.::::::::::::::.::::::.:::::::.:::.:. :
NP_001 TSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS
             820       830       840       850        

>>NP_003472 (OMIM: 601447) ubiquitin carboxyl-terminal h  (835 aa)
 initn: 3402 init1: 1580 opt: 2713  Z-score: 2911.8  bits: 549.8 E(93482): 2.1e-155
Smith-Waterman score: 3606; 61.1% identity (84.7% similar) in 848 aa overlap (26-863:7-835)

               10        20        30        40        50        60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
                                : :.  .::::::..::::.:.:::::.:.:.:::
NP_003                    MAELSEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEG
                                  10        20        30        40 

               70        80        90       100         110        
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRG-ASG-GALPKRRNSKIFL
       :::.::::::.::...::::: :::: ::.::.:  : : .  :.: :  :... ... .
NP_003 GLYICMNTFLGFGKQYVERHFNKTGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAI
              50        60        70        80        90       100 

      120       130       140       150       160           170    
pF1KE3 DLDTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALV----TIACDAVLSSKSPY
        ..   ::. . .: ....:.::.::. :::  ..  :: .:    : : .:.::. :  
NP_003 GVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSAS
             110       120       130       140       150       160 

          180        190       200       210       220       230   
pF1KE3 RKQDPDTWENEL-PVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGK
       :::. ..:..:.  :::.: .: :::: .:::: ::::..::.::::::::::::.:::.
NP_003 RKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGR
             170       180       190       200       210       220 

           240       250       260       270       280       290   
pF1KE3 WFFDSSGGNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGI
        .::.::::.::.::::. ::::::::::::::::::::..:.. :::: ::.::.::::
NP_003 RYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGI
             230       240       250       260       270       280 

           300       310         320       330       340       350 
pF1KE3 DMLHMHGTENGLQDNDIKL--RVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVM
       :::.:. :.. . . .: .  :..:::.:::::. :::..::::::..::::::::.::.
NP_003 DMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVV
             290       300       310       320       330       340 

             360       370       380       390       400       410 
pF1KE3 QAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQ
       :..::::.::: :: .: .::. .: ::::::.::..:::::::::.::::  .:   :.
NP_003 QVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER
             350       360       370       380       390       400 

             420       430       440       450       460       470 
pF1KE3 VMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSD
       :   :.:  :.::.::::::...:.:::::.:::::::::::::.:.::::  .::::..
NP_003 V--PEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNE
               410       420       430       440       450         

             480       490       500       510       520       530 
pF1KE3 VFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPL
       ::::::::.:.:  :.::.::.::::.::::: :.:: ::.::. ::  .:.:: ..  :
NP_003 VFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMAL
     460       470       480       490       500       510         

             540       550       560       570       580       590 
pF1KE3 PELVRAKIPFSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFG
       ::::::..:::.::.:.. ::.::::::.::::::..:::.::::::.:::.::::::::
NP_003 PELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFG
     520       530       540       550       560       570         

             600       610       620       630       640       650 
pF1KE3 LDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPS
       :::::::.::::.::. :::..::. ::::::::::::.::.: ::. :  ..       
NP_003 LDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPML-------
     580       590       600       610       620       630         

             660       670       680       690       700       710 
pF1KE3 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGA
         ::: ..::.:::::..:::::::.::: :::.:.::.. ::..::::.:: .:: .: 
NP_003 --DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGP
              640       650       660       670       680       690

             720       730       740       750       760       770 
pF1KE3 ASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFE
       .:..:..       . :::. :. :.::::.:.::..:::::::.::::.:::::: . .
NP_003 GSTSAAA-------DPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHID-D
                     700       710       720       730       740   

             780        790       800       810       820       830
pF1KE3 EDSDFVIEM-ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKK
        :.. .... :. . :. :::. : ::.:.:: : :.::::::::::::: :::.:::::
NP_003 LDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK
            750       760       770       780       790       800  

              840       850       860   
pF1KE3 EGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS
       :::::::::.::::::.:::::::.:::.:. :
NP_003 EGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS
            810       820       830     

>>NP_001332954 (OMIM: 618439) ubiquitin carboxyl-termina  (755 aa)
 initn: 165 init1:  74 opt: 181  Z-score: 193.1  bits: 46.6 E(93482): 0.00056
Smith-Waterman score: 207; 24.2% identity (57.5% similar) in 339 aa overlap (170-481:17-330)

     140       150       160       170       180        190        
pF1KE3 VIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVS-KYANNLTQL
                                     :: :   .: :. ..   .. .....  ..
NP_001               MRVKDPTKALPEKAKRSKRPTVPHDEDSSDDIAGLTCQHVSHAISV
                             10        20        30        40      

      200        210        220           230       240            
pF1KE3 DNGVR-IPPSGWK-CARCDLRENLW----LNLTDGSVLCGKWFFDSSGGNG---HALEHY
       ..  : :  . :. :..: :.:  .    : ::.   :: :  :.. : :.   :.:.:.
NP_001 NHVKRAIAENLWSVCSEC-LKERRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHF
         50        60         70        80        90       100     

        250       260       270       280       290       300      
pF1KE3 ---RDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG--TENG
          :   . . ..:.:       .. .. .:  :. :  :..    .:.:. :.  :...
NP_001 KSSRTEPHCIIINLSTWI-----IWCYECDEK-LSTHCNKKVLAQIVDFLQKHASKTQTS
         110       120            130        140       150         

          310         320       330       340       350            
pF1KE3 LQDNDIKL--RVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAI---FSIPE
         .  .::  .  : . ::..: : . .   .  :. ::::.:....::: .   ... .
NP_001 AFSRIMKLCEEKCETDEIQKGG-KCRNL---SVRGITNLGNTCFFNAVMQNLAQTYTLTD
     160       170       180           190       200       210     

     360       370       380       390       400        410        
pF1KE3 FQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKP-PVKSELIE--QVMKEE
       ..     .  ..  .    :..:  .:.  :       . :.: :. : :.   . ::: 
NP_001 LMNEIKESSTKLKIF----PSSD--SQLDPL-----VVELSRPGPLTSALFLFLHSMKET
         220       230             240            250       260    

        420       430       440       450         460        470   
pF1KE3 HKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLV--ERNRIGS-ENPS-DV
       .:   . .::...   . .. :.:.. .:::.::.. .:.. :  :...:.. ..:  :.
NP_001 EK---GPLSPKVLFNQLCQKAPRFKDFQQQDSQELLHYLLDAVRTEETKISTVKDPFIDI
             270       280       290       300       310       320 

            480       490       500       510       520       530  
pF1KE3 FRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLP
          ..:::.                                                   
NP_001 SLPIIEERVSKPLLWGRMNKYRSLRETDHDRYSGNVTIENIHQPRAAKKHSSSKDKSQLI
             330       340       350       360       370       380 

>>NP_001332953 (OMIM: 618439) ubiquitin carboxyl-termina  (756 aa)
 initn: 165 init1:  74 opt: 179  Z-score: 191.0  bits: 46.2 E(93482): 0.00074
Smith-Waterman score: 205; 24.3% identity (57.5% similar) in 341 aa overlap (170-481:17-331)

     140       150       160       170       180          190      
pF1KE3 VIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVS---KYANNLT
                                     :: :   .: :.  ... :.   .....  
NP_001               MRVKDPTKALPEKAKRSKRPTVPHDEDS-SDDIAVGLTCQHVSHAI
                             10        20         30        40     

        200        210        220           230       240          
pF1KE3 QLDNGVR-IPPSGWK-CARCDLRENLW----LNLTDGSVLCGKWFFDSSGGNG---HALE
       ....  : :  . :. :..: :.:  .    : ::.   :: :  :.. : :.   :.:.
NP_001 SVNHVKRAIAENLWSVCSEC-LKERRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLK
          50        60         70        80        90       100    

          250       260       270       280       290       300    
pF1KE3 HY---RDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG--TE
       :.   :   . . ..:.:       .. .. .:  :. :  :..    .:.:. :.  :.
NP_001 HFKSSRTEPHCIIINLSTWI-----IWCYECDEK-LSTHCNKKVLAQIVDFLQKHASKTQ
          110       120            130        140       150        

            310         320       330       340       350          
pF1KE3 NGLQDNDIKL--RVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAI---FSI
       ..  .  .::  .  : . ::..: : . .   .  :. ::::.:....::: .   ...
NP_001 TSAFSRIMKLCEEKCETDEIQKGG-KCRNL---SVRGITNLGNTCFFNAVMQNLAQTYTL
      160       170       180           190       200       210    

       360       370       380       390       400        410      
pF1KE3 PEFQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKP-PVKSELIE--QVMK
        ...     .  ..  .    :..:  .:.  :       . :.: :. : :.   . ::
NP_001 TDLMNEIKESSTKLKIF----PSSD--SQLDPL-----VVELSRPGPLTSALFLFLHSMK
          220       230             240            250       260   

          420       430       440       450         460        470 
pF1KE3 EEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLV--ERNRIGS-ENPS-
       : .:   . .::...   . .. :.:.. .:::.::.. .:.. :  :...:.. ..:  
NP_001 ETEK---GPLSPKVLFNQLCQKAPRFKDFQQQDSQELLHYLLDAVRTEETKISTVKDPFI
              270       280       290       300       310       320

              480       490       500       510       520       530
pF1KE3 DVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRP
       :.   ..:::.                                                 
NP_001 DISLPIIEERVSKPLLWGRMNKYRSLRETDHDRYSGNVTIENIHQPRAAKKHSSSKDKSQ
              330       340       350       360       370       380

>>NP_001273006 (OMIM: 616378) UBX domain-containing prot  (297 aa)
 initn: 180 init1: 153 opt: 159  Z-score: 175.2  bits: 42.0 E(93482): 0.0056
Smith-Waterman score: 159; 43.1% identity (72.5% similar) in 51 aa overlap (656-706:5-55)

         630       640       650       660       670       680     
pF1KE3 LPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEV
                                     ... .: :::::    .::. .:::.: :.
NP_001                           MAELTALESLIEMGFPRGRAEKALALTGNQGIEA
                                         10        20        30    

         690       700       710       720       730       740     
pF1KE3 AFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQ
       :..:.. : ..::  :::  :                                       
NP_001 AMDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQ
           40        50        60        70        80        90    




863 residues in 1 query   sequences
65951994 residues in 93482 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jun 20 10:38:59 2019 done: Thu Jun 20 10:39:00 2019
 Total Scan time:  5.810 Total Display time:  0.170

Function used was FASTA [36.3.4 Apr, 2011]
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