Result of FASTA (omim) for pF1KB9808
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9808, 241 aa
  1>>>pF1KB9808 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5076+/-0.000342; mu= 13.2974+/- 0.021
 mean_var=67.9101+/-13.355, 0's: 0 Z-trim(114.3): 37  B-trim: 0 in 0/52
 Lambda= 0.155635
 statistics sampled from 24017 (24054) to 24017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.282), width:  16
 Scan time:  4.850

The best scores are:                                      opt bits E(85289)
XP_006710726 (OMIM: 162030,608654) PREDICTED: beta ( 241) 1620 372.5 3.7e-103
NP_002497 (OMIM: 162030,608654) beta-nerve growth  ( 241) 1620 372.5 3.7e-103
XP_011539820 (OMIM: 162030,608654) PREDICTED: beta ( 296) 1620 372.5 4.5e-103
NP_002518 (OMIM: 162660) neurotrophin-3 isoform 2  ( 257)  601 143.7   3e-34
XP_011519265 (OMIM: 162660) PREDICTED: neurotrophi ( 257)  601 143.7   3e-34
NP_001096124 (OMIM: 162660) neurotrophin-3 isoform ( 270)  601 143.7 3.1e-34
NP_001137278 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_001700 (OMIM: 113505,164230,209880,607499,61026 ( 247)  497 120.3 3.1e-27
NP_001137288 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_001137277 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_733929 (OMIM: 113505,164230,209880,607499,61026 ( 247)  497 120.3 3.1e-27
NP_001137280 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_001137285 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_733931 (OMIM: 113505,164230,209880,607499,61026 ( 247)  497 120.3 3.1e-27
NP_001137283 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_001137279 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_733928 (OMIM: 113505,164230,209880,607499,61026 ( 247)  497 120.3 3.1e-27
NP_001137284 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_001137286 (OMIM: 113505,164230,209880,607499,61 ( 247)  497 120.3 3.1e-27
NP_733927 (OMIM: 113505,164230,209880,607499,61026 ( 255)  497 120.3 3.2e-27
NP_733930 (OMIM: 113505,164230,209880,607499,61026 ( 262)  497 120.3 3.2e-27
NP_001137281 (OMIM: 113505,164230,209880,607499,61 ( 276)  497 120.3 3.4e-27
XP_011518582 (OMIM: 113505,164230,209880,607499,61 ( 329)  497 120.4 3.9e-27
NP_001137282 (OMIM: 113505,164230,209880,607499,61 ( 329)  497 120.4 3.9e-27
XP_005259019 (OMIM: 162662,613100) PREDICTED: neur ( 210)  373 92.4 6.4e-19
NP_006170 (OMIM: 162662,613100) neurotrophin-4 pre ( 210)  373 92.4 6.4e-19
XP_011525311 (OMIM: 162662,613100) PREDICTED: neur ( 210)  373 92.4 6.4e-19
XP_011525312 (OMIM: 162662,613100) PREDICTED: neur ( 210)  373 92.4 6.4e-19
XP_006723295 (OMIM: 162662,613100) PREDICTED: neur ( 210)  373 92.4 6.4e-19
XP_011525310 (OMIM: 162662,613100) PREDICTED: neur ( 220)  373 92.4 6.7e-19


>>XP_006710726 (OMIM: 162030,608654) PREDICTED: beta-ner  (241 aa)
 initn: 1620 init1: 1620 opt: 1620  Z-score: 1972.9  bits: 372.5 E(85289): 3.7e-103
Smith-Waterman score: 1620; 99.6% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KB9 MSMLFYTLITAFLIGIQAEPHSESNVPAGHTIPQAHWTKLQHSLDTALRRARSAPAAAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSMLFYTLITAFLIGIQAEPHSESNVPAGHTIPQAHWTKLQHSLDTALRRARSAPAAAIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ARVAGQTRNITVDPRLFKKQRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPFNRTHRSK
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
XP_006 ARVAGQTRNITVDPRLFKKRRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPFNRTHRSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKAVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKAVRR
              190       200       210       220       230       240

        
pF1KB9 A
       :
XP_006 A
        

>>NP_002497 (OMIM: 162030,608654) beta-nerve growth fact  (241 aa)
 initn: 1620 init1: 1620 opt: 1620  Z-score: 1972.9  bits: 372.5 E(85289): 3.7e-103
Smith-Waterman score: 1620; 99.6% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KB9 MSMLFYTLITAFLIGIQAEPHSESNVPAGHTIPQAHWTKLQHSLDTALRRARSAPAAAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSMLFYTLITAFLIGIQAEPHSESNVPAGHTIPQAHWTKLQHSLDTALRRARSAPAAAIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ARVAGQTRNITVDPRLFKKQRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPFNRTHRSK
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_002 ARVAGQTRNITVDPRLFKKRRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPFNRTHRSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKAVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKAVRR
              190       200       210       220       230       240

        
pF1KB9 A
       :
NP_002 A
        

>>XP_011539820 (OMIM: 162030,608654) PREDICTED: beta-ner  (296 aa)
 initn: 1620 init1: 1620 opt: 1620  Z-score: 1971.5  bits: 372.5 E(85289): 4.5e-103
Smith-Waterman score: 1620; 99.6% identity (100.0% similar) in 241 aa overlap (1-241:56-296)

                                             10        20        30
pF1KB9                               MSMLFYTLITAFLIGIQAEPHSESNVPAGH
                                     ::::::::::::::::::::::::::::::
XP_011 GPKLSSASGPNNSFTKGAAFYPGHTEVHSVMSMLFYTLITAFLIGIQAEPHSESNVPAGH
          30        40        50        60        70        80     

               40        50        60        70        80        90
pF1KB9 TIPQAHWTKLQHSLDTALRRARSAPAAAIAARVAGQTRNITVDPRLFKKQRLRSPRVLFS
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_011 TIPQAHWTKLQHSLDTALRRARSAPAAAIAARVAGQTRNITVDPRLFKKRRLRSPRVLFS
          90       100       110       120       130       140     

              100       110       120       130       140       150
pF1KB9 TQPPREAADTQDLDFEVGGAAPFNRTHRSKRSSSHPIFHRGEFSVCDSVSVWVGDKTTAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPPREAADTQDLDFEVGGAAPFNRTHRSKRSSSHPIFHRGEFSVCDSVSVWVGDKTTAT
         150       160       170       180       190       200     

              160       170       180       190       200       210
pF1KB9 DIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKA
         210       220       230       240       250       260     

              220       230       240 
pF1KB9 LTMDGKQAAWRFIRIDTACVCVLSRKAVRRA
       :::::::::::::::::::::::::::::::
XP_011 LTMDGKQAAWRFIRIDTACVCVLSRKAVRRA
         270       280       290      

>>NP_002518 (OMIM: 162660) neurotrophin-3 isoform 2 prep  (257 aa)
 initn: 464 init1: 402 opt: 601  Z-score: 735.9  bits: 143.7 E(85289): 3e-34
Smith-Waterman score: 634; 42.6% identity (67.4% similar) in 258 aa overlap (1-239:1-256)

               10        20        30                       40     
pF1KB9 MSMLFYTLITAFLIGIQAEPHSESNVPAGHT------IPQAHWTK---------LQHSLD
       ::.:::... :.: :::..  .. ..:          . ::   :         .... .
NP_002 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ
               10        20        30        40        50        60

          50          60        70        80         90       100  
pF1KB9 TALRRARSA--PAAAIAARVAGQTRNITVDPRLFKKQR-LRSPRVLFSTQPPREAADTQD
       ..: .:..   :  .  :. : :   :..: .:...::   :::::.: . : :      
NP_002 STLPKAEAPREPERGGPAKSAFQPV-IAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYL
               70        80         90       100       110         

            110       120       130       140       150       160  
pF1KB9 LDFEVGGAAPFNRTHRSKRSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGE
       ..  ::. .  ::: : :: . :   ::::.::::: :.:: ::..: ::.:..: ::::
NP_002 MEDYVGSPVVANRTSRRKRYAEHKS-HRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGE
     120       130       140        150       160       170        

            170       180       190       200       210        220 
pF1KB9 VNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDG-KQAAWR
       .. .::  ::::.::.:..  :: .::::::.::::: : :..:.:.::: .. : ..::
NP_002 IKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWR
      180       190       200       210       220       230        

             230       240 
pF1KB9 FIRIDTACVCVLSRKAVRRA
       .:::::.:::.::::  :  
NP_002 WIRIDTSCVCALSRKIGRT 
      240       250        

>>XP_011519265 (OMIM: 162660) PREDICTED: neurotrophin-3   (257 aa)
 initn: 464 init1: 402 opt: 601  Z-score: 735.9  bits: 143.7 E(85289): 3e-34
Smith-Waterman score: 634; 42.6% identity (67.4% similar) in 258 aa overlap (1-239:1-256)

               10        20        30                       40     
pF1KB9 MSMLFYTLITAFLIGIQAEPHSESNVPAGHT------IPQAHWTK---------LQHSLD
       ::.:::... :.: :::..  .. ..:          . ::   :         .... .
XP_011 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ
               10        20        30        40        50        60

          50          60        70        80         90       100  
pF1KB9 TALRRARSA--PAAAIAARVAGQTRNITVDPRLFKKQR-LRSPRVLFSTQPPREAADTQD
       ..: .:..   :  .  :. : :   :..: .:...::   :::::.: . : :      
XP_011 STLPKAEAPREPERGGPAKSAFQPV-IAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYL
               70        80         90       100       110         

            110       120       130       140       150       160  
pF1KB9 LDFEVGGAAPFNRTHRSKRSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGE
       ..  ::. .  ::: : :: . :   ::::.::::: :.:: ::..: ::.:..: ::::
XP_011 MEDYVGSPVVANRTSRRKRYAEHKS-HRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGE
     120       130       140        150       160       170        

            170       180       190       200       210        220 
pF1KB9 VNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDG-KQAAWR
       .. .::  ::::.::.:..  :: .::::::.::::: : :..:.:.::: .. : ..::
XP_011 IKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWR
      180       190       200       210       220       230        

             230       240 
pF1KB9 FIRIDTACVCVLSRKAVRRA
       .:::::.:::.::::  :  
XP_011 WIRIDTSCVCALSRKIGRT 
      240       250        

>>NP_001096124 (OMIM: 162660) neurotrophin-3 isoform 1 p  (270 aa)
 initn: 464 init1: 402 opt: 601  Z-score: 735.6  bits: 143.7 E(85289): 3.1e-34
Smith-Waterman score: 634; 42.6% identity (67.4% similar) in 258 aa overlap (1-239:14-269)

                            10        20        30                 
pF1KB9              MSMLFYTLITAFLIGIQAEPHSESNVPAGHT------IPQAHWTK--
                    ::.:::... :.: :::..  .. ..:          . ::   :  
NP_001 MVTFATILQVNKVMSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNK
               10        20        30        40        50        60

             40        50          60        70        80          
pF1KB9 -------LQHSLDTALRRARSA--PAAAIAARVAGQTRNITVDPRLFKKQR-LRSPRVLF
              .... ...: .:..   :  .  :. : :   :..: .:...::   :::::.
NP_001 LSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPV-IAMDTELLRQQRRYNSPRVLL
               70        80        90        100       110         

      90       100       110       120       130       140         
pF1KB9 STQPPREAADTQDLDFEVGGAAPFNRTHRSKRSSSHPIFHRGEFSVCDSVSVWVGDKTTA
       : . : :      ..  ::. .  ::: : :: . :   ::::.::::: :.:: ::..:
NP_001 SDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKS-HRGEYSVCDSESLWVTDKSSA
     120       130       140       150        160       170        

     150       160       170       180       190       200         
pF1KB9 TDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVK
        ::.:..: ::::.. .::  ::::.::.:..  :: .::::::.::::: : :..:.:.
NP_001 IDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVR
      180       190       200       210       220       230        

     210        220       230       240 
pF1KB9 ALTMDG-KQAAWRFIRIDTACVCVLSRKAVRRA
       ::: .. : ..::.:::::.:::.::::  :  
NP_001 ALTSENNKLVGWRWIRIDTSCVCALSRKIGRT 
      240       250       260       270 

>>NP_001137278 (OMIM: 113505,164230,209880,607499,610269  (247 aa)
 initn: 435 init1: 272 opt: 497  Z-score: 610.0  bits: 120.3 E(85289): 3.1e-27
Smith-Waterman score: 497; 36.1% identity (63.5% similar) in 249 aa overlap (1-239:1-247)

               10        20          30        40        50        
pF1KB9 MSMLFYTLITAFLIGIQAEPHSESNV--PAGHTIPQAHWTKLQHSLDTALRRARSAPAAA
       :..:: :.. ...  ..: : .:.:.   .: . : ..     .:..     .:.  . :
NP_001 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB9 -----IAARVAGQTRNITVDPRLFKKQRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPF
            .  ..  . ...  . .  :   : . ::..:.: : :      :.   .     
NP_001 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
               70        80        90       100       110       120

           120       130       140         150       160       170 
pF1KB9 NRTHRSKRSSSHPIFHRGEFSVCDSVSVWV--GDKTTATDIKGKEVMVLGEVNINNSVFK
       : . : .: :. :  .:::.:::::.: ::  .:: ::.:..:  : :: .: .... .:
NP_001 NMSMRVRRHSD-PA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLK
              130         140       150       160       170        

             180       190       200       210        220       230
pF1KB9 QYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQ-AAWRFIRIDTACV
       :::.::::   . .  ::::::..:::: : ::...:.:::::.:.  .::::::::.::
NP_001 QYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCV
      180       190       200       210       220       230        

              240 
pF1KB9 CVLSRKAVRRA
       :.:. :  :  
NP_001 CTLTIKRGR  
      240         

>>NP_001700 (OMIM: 113505,164230,209880,607499,610269) b  (247 aa)
 initn: 435 init1: 272 opt: 497  Z-score: 610.0  bits: 120.3 E(85289): 3.1e-27
Smith-Waterman score: 497; 36.1% identity (63.5% similar) in 249 aa overlap (1-239:1-247)

               10        20          30        40        50        
pF1KB9 MSMLFYTLITAFLIGIQAEPHSESNV--PAGHTIPQAHWTKLQHSLDTALRRARSAPAAA
       :..:: :.. ...  ..: : .:.:.   .: . : ..     .:..     .:.  . :
NP_001 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB9 -----IAARVAGQTRNITVDPRLFKKQRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPF
            .  ..  . ...  . .  :   : . ::..:.: : :      :.   .     
NP_001 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
               70        80        90       100       110       120

           120       130       140         150       160       170 
pF1KB9 NRTHRSKRSSSHPIFHRGEFSVCDSVSVWV--GDKTTATDIKGKEVMVLGEVNINNSVFK
       : . : .: :. :  .:::.:::::.: ::  .:: ::.:..:  : :: .: .... .:
NP_001 NMSMRVRRHSD-PA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLK
              130         140       150       160       170        

             180       190       200       210        220       230
pF1KB9 QYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQ-AAWRFIRIDTACV
       :::.::::   . .  ::::::..:::: : ::...:.:::::.:.  .::::::::.::
NP_001 QYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCV
      180       190       200       210       220       230        

              240 
pF1KB9 CVLSRKAVRRA
       :.:. :  :  
NP_001 CTLTIKRGR  
      240         

>>NP_001137288 (OMIM: 113505,164230,209880,607499,610269  (247 aa)
 initn: 435 init1: 272 opt: 497  Z-score: 610.0  bits: 120.3 E(85289): 3.1e-27
Smith-Waterman score: 497; 36.1% identity (63.5% similar) in 249 aa overlap (1-239:1-247)

               10        20          30        40        50        
pF1KB9 MSMLFYTLITAFLIGIQAEPHSESNV--PAGHTIPQAHWTKLQHSLDTALRRARSAPAAA
       :..:: :.. ...  ..: : .:.:.   .: . : ..     .:..     .:.  . :
NP_001 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB9 -----IAARVAGQTRNITVDPRLFKKQRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPF
            .  ..  . ...  . .  :   : . ::..:.: : :      :.   .     
NP_001 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
               70        80        90       100       110       120

           120       130       140         150       160       170 
pF1KB9 NRTHRSKRSSSHPIFHRGEFSVCDSVSVWV--GDKTTATDIKGKEVMVLGEVNINNSVFK
       : . : .: :. :  .:::.:::::.: ::  .:: ::.:..:  : :: .: .... .:
NP_001 NMSMRVRRHSD-PA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLK
              130         140       150       160       170        

             180       190       200       210        220       230
pF1KB9 QYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQ-AAWRFIRIDTACV
       :::.::::   . .  ::::::..:::: : ::...:.:::::.:.  .::::::::.::
NP_001 QYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCV
      180       190       200       210       220       230        

              240 
pF1KB9 CVLSRKAVRRA
       :.:. :  :  
NP_001 CTLTIKRGR  
      240         

>>NP_001137277 (OMIM: 113505,164230,209880,607499,610269  (247 aa)
 initn: 435 init1: 272 opt: 497  Z-score: 610.0  bits: 120.3 E(85289): 3.1e-27
Smith-Waterman score: 497; 36.1% identity (63.5% similar) in 249 aa overlap (1-239:1-247)

               10        20          30        40        50        
pF1KB9 MSMLFYTLITAFLIGIQAEPHSESNV--PAGHTIPQAHWTKLQHSLDTALRRARSAPAAA
       :..:: :.. ...  ..: : .:.:.   .: . : ..     .:..     .:.  . :
NP_001 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB9 -----IAARVAGQTRNITVDPRLFKKQRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPF
            .  ..  . ...  . .  :   : . ::..:.: : :      :.   .     
NP_001 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
               70        80        90       100       110       120

           120       130       140         150       160       170 
pF1KB9 NRTHRSKRSSSHPIFHRGEFSVCDSVSVWV--GDKTTATDIKGKEVMVLGEVNINNSVFK
       : . : .: :. :  .:::.:::::.: ::  .:: ::.:..:  : :: .: .... .:
NP_001 NMSMRVRRHSD-PA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLK
              130         140       150       160       170        

             180       190       200       210        220       230
pF1KB9 QYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQ-AAWRFIRIDTACV
       :::.::::   . .  ::::::..:::: : ::...:.:::::.:.  .::::::::.::
NP_001 QYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCV
      180       190       200       210       220       230        

              240 
pF1KB9 CVLSRKAVRRA
       :.:. :  :  
NP_001 CTLTIKRGR  
      240         




241 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:00:40 2016 done: Sat Nov  5 02:00:41 2016
 Total Scan time:  4.850 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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