Result of FASTA (ccds) for pF1KB7918
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7918, 346 aa
  1>>>pF1KB7918 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6857+/-0.000812; mu= 8.2205+/- 0.050
 mean_var=165.5357+/-32.876, 0's: 0 Z-trim(113.9): 46  B-trim: 0 in 0/51
 Lambda= 0.099685
 statistics sampled from 14486 (14531) to 14486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.446), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS12452.1 USF2 gene_id:7392|Hs108|chr19          ( 346) 2271 337.8 7.9e-93
CCDS12453.1 USF2 gene_id:7392|Hs108|chr19          ( 279) 1332 202.7   3e-52
CCDS82329.1 USF2 gene_id:7392|Hs108|chr19          ( 215)  937 145.8 3.1e-35
CCDS1214.1 USF1 gene_id:7391|Hs108|chr1            ( 310)  756 119.9 2.8e-27


>>CCDS12452.1 USF2 gene_id:7392|Hs108|chr19               (346 aa)
 initn: 2271 init1: 2271 opt: 2271  Z-score: 1780.1  bits: 337.8 E(32554): 7.9e-93
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
              250       260       270       280       290       300

              310       320       330       340      
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
              310       320       330       340      

>>CCDS12453.1 USF2 gene_id:7392|Hs108|chr19               (279 aa)
 initn: 1332 init1: 1332 opt: 1332  Z-score: 1051.5  bits: 202.7 E(32554): 3e-52
Smith-Waterman score: 1688; 80.6% identity (80.6% similar) in 346 aa overlap (1-346:1-279)

               10        20        30        40        50        60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
       ::::::::::::::::                                            
CCDS12 DHNIQYQFRTETNGGQ--------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
                              :::::::::::::::::::::::::::::::::::::
CCDS12 -----------------------AVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
                                80        90       100       110   

              190       200       210       220       230       240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
           120       130       140       150       160       170   

              250       260       270       280       290       300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
           180       190       200       210       220       230   

              310       320       330       340      
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
           240       250       260       270         

>>CCDS82329.1 USF2 gene_id:7392|Hs108|chr19               (215 aa)
 initn: 928 init1: 928 opt: 937  Z-score: 746.1  bits: 145.8 E(32554): 3.1e-35
Smith-Waterman score: 1149; 62.1% identity (62.1% similar) in 346 aa overlap (1-346:1-215)

               10        20        30        40        50        60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
       ::::::::::::::::                                            
CCDS82 DHNIQYQFRTETNGGQ--------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
                                                                   
CCDS82 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
                                  :::::::::::::::::::::::::::::::::
CCDS82 ---------------------------TGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
                                    80        90       100         

              250       260       270       280       290       300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
     110       120       130       140       150       160         

              310       320       330       340      
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
     170       180       190       200       210     

>>CCDS1214.1 USF1 gene_id:7391|Hs108|chr1                 (310 aa)
 initn: 1000 init1: 749 opt: 756  Z-score: 603.2  bits: 119.9 E(32554): 2.8e-27
Smith-Waterman score: 1005; 51.8% identity (74.4% similar) in 336 aa overlap (22-340:4-304)

               10        20        30         40        50         
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
                            ..:  :.::: :..:::. . : :. :.:::.:.:.:: 
CCDS12                   MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
                                 10        20         30        40 

       60        70        80        90       100       110        
pF1KB7 FGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVG
       : : :..: :::: ::::: :::.::..:::::: . .::.:                 :
CCDS12 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAIS-----------------G
              50         60        70        80                    

      120       130       140       150       160       170        
pF1KB7 VDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGD-
                ::. :.          ::::. :..  .  .:....:....:::...::: 
CCDS12 Y--------PATQSMTQ--------AVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDG
                    90               100       110       120       

              180             190        200       210       220   
pF1KB7 -------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRTIAPRTHPYSP
              .::  :..: ..    :.   : :::.:::.::.::: :.::.::::::::::
CCDS12 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
       130       140       150       160       170       180       

           230       240       250       260       270       280   
pF1KB7 KIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKA
       : .. :: :::.::::::::::::::::::::::::::::::. ...:.: :::::::::
CCDS12 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
       190       200       210       220       230       240       

           290       300       310       320       330       340   
pF1KB7 CDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEG
       ::::.::::.:.:..: ..  ..::.::..::::.:.:::.: ::::::..:.::.:   
CCDS12 CDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKN
       250       260       270       280       290       300       

          
pF1KB7 TRQ
          
CCDS12 DSN
       310




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:56:04 2016 done: Sat Nov  5 01:56:04 2016
 Total Scan time:  3.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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