Result of FASTA (omim) for pF1KE0197
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0197, 119 aa
  1>>>pF1KE0197 119 - 119 aa - 119 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0065+/-0.000296; mu= 13.5212+/- 0.019
 mean_var=77.2840+/-14.637, 0's: 0 Z-trim(118.4): 42  B-trim: 177 in 1/53
 Lambda= 0.145891
 statistics sampled from 31194 (31236) to 31194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.366), width:  16
 Scan time:  4.780

The best scores are:                                      opt bits E(85289)
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119)  782 172.8 1.2e-43
NP_954637 (OMIM: 600835,609423) stromal cell-deriv (  89)  592 132.7   1e-31
NP_000600 (OMIM: 600835,609423) stromal cell-deriv (  93)  592 132.7 1.1e-31
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140)  594 133.3 1.1e-31
NP_001264919 (OMIM: 600835,609423) stromal cell-de ( 103)  255 61.8 2.6e-10
NP_000575 (OMIM: 146930) interleukin-8 precursor [ (  99)  164 42.6 0.00015
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125)  158 41.5 0.00042
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107)  153 40.4 0.00077
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107)  152 40.1  0.0009
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso (  91)  147 39.0  0.0017
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114)  142 38.1   0.004
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107)  140 37.6  0.0052


>>NP_001029058 (OMIM: 600835,609423) stromal cell-derive  (119 aa)
 initn: 782 init1: 782 opt: 782  Z-score: 904.8  bits: 172.8 E(85289): 1.2e-43
Smith-Waterman score: 782; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
               70        80        90       100       110         

>>NP_954637 (OMIM: 600835,609423) stromal cell-derived f  (89 aa)
 initn: 592 init1: 592 opt: 592  Z-score: 690.3  bits: 132.7 E(85289): 1e-31
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
       :::::::::::::::::::::::::::::                              
NP_954 ARLKNNNRQVCIDPKLKWIQEYLEKALNK                              
               70        80                                       

>>NP_000600 (OMIM: 600835,609423) stromal cell-derived f  (93 aa)
 initn: 592 init1: 592 opt: 592  Z-score: 690.0  bits: 132.7 E(85289): 1.1e-31
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
       :::::::::::::::::::::::::::::                              
NP_000 ARLKNNNRQVCIDPKLKWIQEYLEKALNKRFKM                          
               70        80        90                             

>>NP_001171605 (OMIM: 600835,609423) stromal cell-derive  (140 aa)
 initn: 627 init1: 591 opt: 594  Z-score: 690.0  bits: 133.3 E(85289): 1.1e-31
Smith-Waterman score: 594; 86.7% identity (90.5% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 
       ::::::::::::::::::::::::::::.      .::.   : .               
NP_001 ARLKNNNRQVCIDPKLKWIQEYLEKALNNLISAAPAGKRVIAGARALHPSPPRACPTARA
               70        80        90       100       110       120

NP_001 LCEIRLWPPPEWSWPSPGDV
              130       140

>>NP_001264919 (OMIM: 600835,609423) stromal cell-derive  (103 aa)
 initn: 265 init1: 255 opt: 255  Z-score: 306.1  bits: 61.8 E(85289): 2.6e-10
Smith-Waterman score: 255; 100.0% identity (100.0% similar) in 38 aa overlap (1-38:1-38)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::                      
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHYCTCLIRVSFHGATPLTQGSWV
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
                                                                  
NP_001 LYSLSCAGGETGLREPGPMVSPRVESHQEGRLGVPGPVNLGKA                
               70        80        90       100                   

>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo  (99 aa)
 initn: 138 init1:  95 opt: 164  Z-score: 202.8  bits: 42.6 E(85289): 0.00015
Smith-Waterman score: 164; 31.2% identity (69.8% similar) in 96 aa overlap (1-89:1-95)

               10           20         30         40        50     
pF1KE0 MNAKVVVVLV---LVLTALCLSDGKPVSLS-YRCPC-RFFESHVARANVKHLKILNT-PN
       :..:..:.:.   :. .::: .   : : .  :: : . . .      .:.:..... :.
NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE0 CA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKA
       ::  .:...: ...:..:.::: .:.:. .:: :..                        
NP_000 CANTEIIVKL-SDGRELCLDPKENWVQRVVEKFLKRAENS                    
               70         80        90                             

             
pF1KE0 AQKRKN

>>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu  (125 aa)
 initn: 146 init1:  52 opt: 158  Z-score: 194.7  bits: 41.5 E(85289): 0.00042
Smith-Waterman score: 158; 30.8% identity (62.5% similar) in 120 aa overlap (5-118:6-121)

                10        20        30         40        50        
pF1KE0  MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPC-RFFESHVARANVKHLKILN-TPNCA-
            :. .: ..: .:   .: ::  . :: :    .. .   ..: :: .  .:.:  
NP_002 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
               10        20        30        40        50        60

         60        70        80           90       100       110   
pF1KE0 LQIVARLKNNNRQVCIDPKLKWIQEYL---EKALNKGRREEKVGKKEKIGKKKRQKKRKA
       ..:.: :::.  :.:..:    ..: .   :: ... ....: :::..  :::  : ::.
NP_002 IEIIATLKNGV-QTCLNPDSADVKELIKKWEKQVSQ-KKKQKNGKKHQ--KKKVLKVRKS
               70         80        90        100         110      

                
pF1KE0 AQKRKN   
        ..:.    
NP_002 QRSRQKKTT
        120     

>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu  (107 aa)
 initn: 133 init1: 103 opt: 153  Z-score: 189.9  bits: 40.4 E(85289): 0.00077
Smith-Waterman score: 153; 29.2% identity (62.9% similar) in 89 aa overlap (4-90:17-104)

                            10        20        30        40       
pF1KE0              MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHL
                       .:...:.:...:   . :  :    :: :    . .   :.. .
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV
               10        20        30        40        50        60

        50          60        70        80        90       100     
pF1KE0 KILNT-PNCA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKK
       .. .  :.::  ...: :::. ...:..:    .:. .:: ::::               
NP_002 NVRSPGPHCAQTEVIATLKNG-KKACLNPASPMVQKIIEKILNKGSTN            
               70        80         90       100                   

         110         
pF1KE0 KRQKKRKAAQKRKN

>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu  (107 aa)
 initn:  93 init1:  75 opt: 152  Z-score: 188.7  bits: 40.1 E(85289): 0.0009
Smith-Waterman score: 152; 26.7% identity (65.6% similar) in 90 aa overlap (4-91:17-105)

                            10        20        30        40       
pF1KE0              MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHL
                       .:...:.:...:   . : :..   :: :    . .   :.. .
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
               10        20        30        40        50        60

        50          60        70        80        90       100     
pF1KE0 KILNT-PNCA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKK
       :. .  :.::  ...: :::. ...:..:    ... .:: :..:.              
NP_002 KVKSPGPHCAQTEVIATLKNG-QKACLNPASPMVKKIIEKMLKNGKSN            
               70        80         90       100                   

         110         
pF1KE0 KRQKKRKAAQKRKN

>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform  (91 aa)
 initn: 116 init1:  90 opt: 147  Z-score: 184.0  bits: 39.0 E(85289): 0.0017
Smith-Waterman score: 147; 33.3% identity (66.7% similar) in 81 aa overlap (7-83:8-85)

                10         20        30        40           50     
pF1KE0  MNAKVVVVLVLVLTALCL-SDGKPVSLSYRCPCRFFESHVARANVK-HLK--ILNTPNC
              ....:. ::::  ....: : :   :: :  ...::   . :.:  . .. .:
NP_002 MKVSAAALAVILIATALCAPASASPYS-SDTTPCCF--AYIARPLPRAHIKEYFYTSGKC
               10        20         30          40        50       

          60        70        80        90       100       110     
pF1KE0 ALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQ
       .   :. .  .::::: .:. ::..::.                                
NP_002 SNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS                          
        60        70        80        90                           




119 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:21:06 2016 done: Sat Nov  5 01:21:07 2016
 Total Scan time:  4.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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