GENSCAN 1.0	Date run:  5-Nov-116	Time: 20:16:08

Sequence gi568815597r:115737968_115938372 : 200405 bp : 40.25% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 Intr -    368    257  112  2  1   55  101   198 0.913  16.83
 1.03 Intr -   2861   2761  101  0  2  113   95   132 0.999  15.31
 1.02 Intr -   6945   6861   85  0  1   90  106   144 0.846  14.87
 1.01 Init -   8539   8471   69  1  0   60  116    93 0.927  10.40
 1.00 Prom -  10369  10330   40                              -8.75

 2.00 Prom +  11094  11133   40                              -7.25
 2.01 Init +  14907  14995   89  2  2   52  119    36 0.186   3.26
 2.02 Term +  23402  23582  181  2  1   39   47   441 0.758  31.20
 2.03 PlyA +  24387  24392    6                               1.05

 3.04 PlyA -  25034  25029    6                               1.05
 3.03 Term -  28863  28753  111  0  0   36   49    55 0.181  -6.02
 3.02 Intr -  30521  30341  181  1  1  102  107   142 0.943  16.45
 3.01 Init -  52392  52352   41  0  2   86   69    68 0.006   4.41
 3.00 Prom -  52908  52869   40                              -2.95

 4.03 PlyA -  54786  54781    6                              -0.45
 4.02 Term -  55325  55167  159  2  0  -11   46   189 0.553   1.76
 4.01 Init -  57341  57138  204  2  0   77   98   101 0.654   8.90
 4.00 Prom -  57767  57728   40                              -6.55

 5.04 PlyA -  57801  57796    6                               1.05
 5.03 Term -  59158  58945  214  0  1   99   45   111 0.175   3.62
 5.02 Intr -  59933  59894   40  0  1   73   95    17 0.048  -2.74
 5.01 Init -  76865  76733  133  2  1   65   24   140 0.144   5.65
 5.00 Prom -  82332  82293   40                              -4.55

 6.03 PlyA -  84866  84861    6                               1.05
 6.02 Term -  90394  90211  184  0  1   88   34   197 0.773  10.33
 6.01 Init -  91673  91597   77  2  2   66   94    47 0.536   3.71
 6.00 Prom -  97667  97628   40                              -5.35

 7.03 PlyA -  98415  98410    6                               1.05
 7.02 Term - 100413  99998  416  1  2   88   49   638 0.993  54.34
 7.01 Init - 101377 101242  136  1  1   87   30   130 0.313   5.45
 7.00 Prom - 112730 112691   40                              -3.55

 8.02 PlyA - 113276 113271    6                               1.05
 8.01 Sngl - 119719 119003  717  1  0   15   47   737 0.938  58.27
 8.00 Prom - 120377 120338   40                              -6.85

 9.03 PlyA - 120771 120766    6                               1.05
 9.02 Term - 123786 123656  131  1  2   73   46   118 0.572   3.46
 9.01 Init - 129150 129084   67  0  1   76  116    39 0.688   6.79
 9.00 Prom - 132073 132034   40                              -7.15

10.00 Prom + 132679 132718   40                              -7.35
10.01 Init + 135809 135949  141  1  0   60   37    82 0.149   0.48
10.02 Intr + 140347 140551  205  0  1   76   45   124 0.208   4.75
10.03 Intr + 156322 156497  176  2  2  -20   29   200 0.025   2.04
10.04 Intr + 171102 171269  168  2  0   67   57   123 0.045   6.32
10.05 Term + 175567 175731  165  0  0   39   44   233 0.922  10.93
10.06 PlyA + 176307 176312    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  31992  31916   77  0  2   70   75    46 0.896   2.11
S.002 Term +  34279  34593  315  0  0   84   36   240 0.924  12.36


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_1|123_aa
MVMLRSPDKDVEKLDYSYLAHGKLVAQVLEHKAIGFVMVDAKKEAKLAKKLGFDEEGSLY
ILKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIISSKLEVQAFERIEDYIKLIGFFKSED
SEX

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_1|369_bp
atggttatgctacgaagtcctgacaaagacgtggaaaaactggattattcataccttgct
catgggaagcttgtggcccaggtccttgaacataaagctataggctttgtgatggtggat
gccaagaaagaagccaagcttgccaagaaactgggttttgatgaagaaggaagcctgtat
attcttaagggtgatcgcacaatagagtttgatggcgagtttgcagctgatgtcttggtg
gagttcctcttggatctaattgaagacccagtggagatcatcagcagcaaactggaagtc
caagccttcgaacgcattgaagactacatcaaactcattggctttttcaagagtgaggac
tcagaatnn

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_2|89_aa
MSLISDQDSVSGRKSDTCRWCYKLRISQTCLGNRIRLSQKKKKKKKKKKKKKKKEEEEEE
EGEEEEEEEGEEGEEEEEEEEEEEFIKCT

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_2|270_bp
atgtctctgatctcagaccaagacagtgtcagtgggagaaaaagtgacacgtgcaggtgg
tgctacaagttgagaatcagtcagacctgcctgggcaacagaataagactcagtcaaaaa
aaaaagaagaagaagaagaagaagaagaagaagaagaagaaagaagaagaagaagaagaa
gaaggagaagaagaagaagaagaagaaggagaagaaggagaagaagaagaagaagaagaa
gaagaagaagagttcataaagtgcacatga

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_3|110_aa
MAAGRRLLREEGGKAEEGLNFPTYDGKDRVVSLSEKNFKQVLKKYDLLCLYYHEPVSSDK
VTQKQFQLKEIVLETMQNHEQKLPLGLPSLQTPLIQECPFHSGCRPSRDR

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_3|333_bp
atggctgctggcagaaggctactacgagaagaagggggaaaggcagaagaggggcttaat
ttccccacatatgatgggaaggaccgagtggtaagtctttccgagaagaacttcaagcag
gttttaaagaaatatgacttgctttgcctctactaccatgagccggtgtcttcagataag
gtcacgcaaaaacagttccaactgaaagaaatcgtgcttgagactatgcaaaatcatgaa
cagaaacttcccctgggcttaccatccctccagacacctttgatccaagagtgccctttt
cacagtgggtgccggcccagcagagaccgataa

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_4|120_aa
MIREEQRQYRLESHEVVNPREVTPVWWVKGISCCRNSENALAEVINTSRFRLCLLGNTYI
ILGTWTGKMRVKTSDGRENKGRKVAAATKHLASGRLPIRPYSLTDPLKPGLLNKKPVFQT

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_4|363_bp
atgatcagagaagaacaaagacaatacagactggaaagccatgaagtggtgaatccgagg
gaagtaactccagtgtggtgggtgaaaggcatctcatgctgcaggaattctgaaaatgcc
ctggcagaggtcattaatacaagcaggtttcgcctctgcttgttggggaacacatacatc
attttaggtacttggactggcaagatgagggttaaaaccagtgatggtagagaaaacaaa
ggaaggaaagtggcagctgctaccaaacacctggccagtggacggctcccaatccgtcct
tattcactcacagaccctctgaagccagggctgcttaataagaaaccggtgtttcagacc
tag

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_5|128_aa
MGTELEKFSVGGVLIIKGLQCCAQEFELHSIDSCGPVEASKQRNDKRKLIANSPSHRCLL
FEQMGLGKLGEESHSVLINSPHTQTQPGLQGLRNGTAPTPLPLRPDVPRYKESQAEDPHH
RINETANQ

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_5|387_bp
atggggacagagctggaaaagttcagtgtaggtggagttctgatcatcaagggccttcaa
tgctgtgctcaggaatttgaacttcattccatagacagttgtggaccagtggaagcttct
aagcagaggaatgataaaagaaaactgattgcaaattcaccttcccatagatgccttttg
tttgaacagatgggattggggaagctaggggaagaaagccattctgttctcattaactct
ccccatacacaaacacaacctgggcttcagggactcagaaacgggacagctcccactcca
ttgccattgagacctgatgtaccgagatacaaagaaagccaggctgaagacccacatcac
cgtatcaacgagacagctaaccagtga

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_6|86_aa
MGPAQWTCPLVPLGESETSKGLQSSRVQTSGRAGGRGRRRWDRGHGTLEVTRRLSDVTGD
NDDTSLSAAVSGERPSTEGPSGAQQC

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_6|261_bp
atgggccctgctcagtggacttgtcctctggtgccactcggagagtccgaaacttcaaag
ggactgcaaagcagcagggtgcagacctcagggagagcgggcggacgcggacgccgcagg
tgggatcgcggccacgggaccttggaagtcactcggaggctgtcggacgtaaccggcgat
aatgatgacacctcgctgtctgcggcagtctcgggagagcgtccctccaccgaaggcccc
agtggggcgcagcagtgttag

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_7|183_aa
MQLPPGQHALHPLVPACPAPGPSLLFPSLCILSSLSGPAAGIFPQASKMMLSPDQAADSD
HPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRRR
RATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHV
LDV

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_7|552_bp
atgcagctcccgccgggacaacacgcgctgcacccgctagtccccgcctgccccgccccg
ggcccttcccttctcttcccttccctctgcatcctctcctccctcagcggcccggctgcc
ggcattttcccgcaagcctccaaaatgatgctgagtccggaccaagcagcagattcggac
catcccagctcggcgcactcggatccggagtccctgggcggcacggacaccaaggtgctc
ggcagcgtgtcggacctggagccggtggaggaggccgagggcgacggcaagggcggcagc
cgagccgcgctctacccgcacccgcagcagctgagccgcgaggagaagcgccgccgccgg
cgcgccacggccaagtaccgctcggcccacgccacccgcgagcgcatccgcgtggaagcc
ttcaacttggccttcgccgagctccgcaaattgctgcccacgctgcccccggacaagaag
ctctccaagatcgagatcctgcgcctggccatctgctacatctcctatctcaaccacgtc
ctggacgtgtag

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_8|238_aa
MRDPNTKLSRGFGFVTYTTVEEVDAAMNARPHEVDGRVVEPKRAVSREDSQRPGAHLTVK
KIFVGGIKEDTEEHHLRDYFELCGKMELIEIITDRGSGKKRGFAFVTFDDYDSMDKTVIQ
KCYTVNGHNCEVRKALSKQEMSSASSSQRGRSGSGNFGGGHGGSFWNDNFGHGGNFNGCG
DGYNGFGNDGSNFGSGRSCNDFGSYNNQSSNFGPMKAGDFGGRNSGPYGGGGQYFAKP

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_8|717_bp
atgagagatccaaacaccaagctctccaggggctttgggtttgtcacatataccactgtg
gaggaggtggatgcagccatgaatgcgaggccacacgaggtcgacggaagagttgtggaa
ccaaagagagctgtctcaagagaagattctcaaagaccaggtgcccacttaactgtgaaa
aagatatttgttggtggtattaaagaagacactgaagaacatcacctaagagattatttt
gaactgtgtggaaaaatggaactgattgaaataataactgaccgaggcagtggcaagaag
aggggctttgcctttgtaacctttgacgactatgactccatggataagactgtcattcag
aaatgctatactgtgaatggccacaactgtgaagttaggaaagccctgtcaaagcaagag
atgtctagtgcttcatccagccaaagaggtcgaagtggttctggaaactttggtggtggt
catggaggtagtttttggaatgacaactttggtcatggaggaaacttcaatggttgtgga
gatggctataatggatttggtaatgatggaagcaattttggaagtggtagaagctgtaat
gattttggcagttacaacaatcagtcttcaaattttggacccatgaaggcaggagacttt
ggaggcagaaactctggcccctatggtggtggaggccaatactttgccaaaccatga

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_9|65_aa
MTDFMARAGKVQDKPGTLKVEEGKQAKQGQIHAAGSDMEGEEAMAISISAWASVVLWLLQ
CIGFC

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_9|198_bp
atgactgatttcatggctcgggctgggaaagtacaagataagcctggaacacttaaggtt
gaagaaggtaagcaagctaagcaaggacaaattcatgcagcagggagtgatatggaggga
gaagaggccatggcgatatccatttctgcttgggcttctgtggttctgtggctgctccag
tgcattggcttctgctga

>gi568815597r:115737968_115938372|GENSCAN_predicted_peptide_10|284_aa
MSGDVFGYHCYQKGVLIQTPREGYWTLHKKEFRASPQSEVKARFIKKMRKQRHRGVNELA
RGHTASVTEPELNRQAGSGAFALPLDSERLSAKQWIMSINMPFMTTGGNAVCTGCTVKQP
QASPSGGIPKEGIVTIRDDSSMHIIAPEDLPVGRDVRVEDCDIDDPDSAWSYPNHGIFQS
CRHLLHSRELQNQASRAIIIMPKWAEKNARDEKEDMEKYTQCDDVLTCKWGQPWEQSLNI
AIHRCEAIYYSCLAEDEAVSWEMDELRELPGNGAAVRDSINLKA

>gi568815597r:115737968_115938372|GENSCAN_predicted_CDS_10|855_bp
atgtctggagatgtttttggttatcattgttaccagaaaggggtcctgatccagacccca
agagagggttattggaccttgcacaagaaagaattcagggcgagtccacagagtgaagtg
aaagcaaggtttattaagaaaatgagaaaacagaggcacaggggagtcaatgaacttgcc
agaggtcacacagccagtgtaacagagccagagctcaacaggcaggctggctctggagct
tttgctcttccccttgactctgagaggctttcagcaaagcaatggataatgagcatcaac
atgcctttcatgacaacaggaggaaatgcagtctgcacaggctgcactgtaaaacagcct
caggcaagtccttcaggaggtattccaaaagaagggattgttaccataagagatgacagc
tccatgcatattattgcccctgaagacctgccagtgggacgagatgtgcgggtggaagac
tgtgatattgatgatcctgactctgcatggtcctaccctaatcatgggatctttcagagc
tgtcgacatctgctccactctagagagctgcagaaccaagccagcagagcaataataatt
atgcccaaatgggctgaaaagaatgcaagagatgagaaggaagacatggaaaaatacacc
cagtgcgatgatgttctaacctgtaagtggggacagccatgggaacagtctctgaacatt
gctatccacagatgtgaggccatctactacagctgcctggctgaggatgaagctgtgagt
tgggaaatggatgagctaagagaactaccgggaaatggggccgcagtacgtgactccatc
aacctgaaagcctga