Result of FASTA (omim) for pF1KB6773
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6773, 118 aa
  1>>>pF1KB6773 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5760+/-0.000232; mu= 7.8230+/- 0.015
 mean_var=121.4169+/-24.844, 0's: 0 Z-trim(126.1): 16  B-trim: 4419 in 2/57
 Lambda= 0.116395
 statistics sampled from 51307 (51323) to 51307 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.871), E-opt: 0.2 (0.602), width:  16
 Scan time:  5.360

The best scores are:                                      opt bits E(85289)
NP_055046 (OMIM: 108600,185880) vesicle-associated ( 118)  788 141.1 4.1e-34
NP_058439 (OMIM: 108600,185880) vesicle-associated ( 116)  754 135.4 2.1e-32
NP_001284367 (OMIM: 108600,185880) vesicle-associa ( 116)  754 135.4 2.1e-32
NP_954740 (OMIM: 108600,185880) vesicle-associated ( 117)  754 135.4 2.1e-32
NP_055047 (OMIM: 185881) vesicle-associated membra ( 116)  609 111.0 4.5e-25
NP_001317054 (OMIM: 185881) vesicle-associated mem ( 118)  608 110.8 5.1e-25
NP_004772 (OMIM: 603657) vesicle-associated membra ( 100)  463 86.4 9.6e-18
XP_016858330 (OMIM: 603657) PREDICTED: vesicle-ass ( 122)  458 85.7   2e-17
NP_001172056 (OMIM: 606909) vesicle-associated mem ( 140)  270 54.1 7.1e-08
NP_003753 (OMIM: 606909) vesicle-associated membra ( 141)  270 54.1 7.1e-08
NP_003752 (OMIM: 603177) vesicle-associated membra ( 100)  224 46.3 1.2e-05
NP_006625 (OMIM: 607029) vesicle-associated membra ( 116)  187 40.1 0.00096


>>NP_055046 (OMIM: 108600,185880) vesicle-associated mem  (118 aa)
 initn: 788 init1: 788 opt: 788  Z-score: 733.5  bits: 141.1 E(85289): 4.1e-34
Smith-Waterman score: 788; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
               70        80        90       100       110        

>>NP_058439 (OMIM: 108600,185880) vesicle-associated mem  (116 aa)
 initn: 754 init1: 754 opt: 754  Z-score: 702.8  bits: 135.4 E(85289): 2.1e-32
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::     
NP_058 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD  
               70        80        90       100       110        

>>NP_001284367 (OMIM: 108600,185880) vesicle-associated   (116 aa)
 initn: 754 init1: 754 opt: 754  Z-score: 702.8  bits: 135.4 E(85289): 2.1e-32
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::     
NP_001 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG  
               70        80        90       100       110        

>>NP_954740 (OMIM: 108600,185880) vesicle-associated mem  (117 aa)
 initn: 754 init1: 754 opt: 754  Z-score: 702.7  bits: 135.4 E(85289): 2.1e-32
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::     
NP_954 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR 
               70        80        90       100       110        

>>NP_055047 (OMIM: 185881) vesicle-associated membrane p  (116 aa)
 initn: 628 init1: 597 opt: 609  Z-score: 571.2  bits: 111.0 E(85289): 4.5e-25
Smith-Waterman score: 609; 78.3% identity (89.2% similar) in 120 aa overlap (1-118:1-116)

                 10        20        30        40        50        
pF1KB6 MSAPAQ--PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLER
       ::: :   :::    . :  ::::.::::.:::::::::::::.:::::.::::::::::
NP_055 MSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLER
               10            20        30        40        50      

       60        70        80        90       100       110        
pF1KB6 DQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       ::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..:: :
NP_055 DQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
         60        70        80        90       100       110      

>>NP_001317054 (OMIM: 185881) vesicle-associated membran  (118 aa)
 initn: 628 init1: 597 opt: 608  Z-score: 570.2  bits: 110.8 E(85289): 5.1e-25
Smith-Waterman score: 608; 77.8% identity (90.6% similar) in 117 aa overlap (2-118:6-118)

                   10        20        30        40        50      
pF1KB6     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
NP_001 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
               10            20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..::
NP_001 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
         60        70        80        90       100       110      

         
pF1KB6 FT
        :
NP_001 ST
         

>>NP_004772 (OMIM: 603657) vesicle-associated membrane p  (100 aa)
 initn: 454 init1: 437 opt: 463  Z-score: 439.6  bits: 86.4 E(85289): 9.6e-18
Smith-Waterman score: 463; 73.1% identity (88.2% similar) in 93 aa overlap (23-115:4-96)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
                             ::     ::::::::: ::.:::::.::::::::::::
NP_004                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                                  10        20        30        40 

               70        80        90       100       110         
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 
       ::::::::::::::::::::.::::::::::::::::  .  .. .:....:...    
NP_004 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
              50        60        70        80        90       100

>>XP_016858330 (OMIM: 603657) PREDICTED: vesicle-associa  (122 aa)
 initn: 454 init1: 437 opt: 458  Z-score: 433.8  bits: 85.7 E(85289): 2e-17
Smith-Waterman score: 458; 76.1% identity (84.8% similar) in 92 aa overlap (23-114:4-94)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
                             ::     ::::::::: ::.:::::.::::::::::::
XP_016                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                                  10        20        30        40 

               70        80        90       100       110          
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT  
       ::::::::::::::::::::.::::::::::::::::  . :    .: ..:.:      
XP_016 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIGELPFS
              50        60        70        80         90       100

XP_016 KLIGKVFSMCSQTIDFVYKNSD
              110       120  

>>NP_001172056 (OMIM: 606909) vesicle-associated membran  (140 aa)
 initn: 258 init1: 237 opt: 270  Z-score: 262.4  bits: 54.1 E(85289): 7.1e-08
Smith-Waterman score: 270; 35.8% identity (78.9% similar) in 95 aa overlap (20-114:39-132)

                          10        20        30        40         
pF1KB6            MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIR
                                     :: ::  .   : .....: ::.::.:...
NP_001 LNDDDVTGSVKSERRNLLEDDSDEEEDFFLGPSGPRFG-PRNDKIKHVQNQVDEVIDVMQ
       10        20        30        40         50        60       

      50        60        70        80        90       100         
pF1KB6 VNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIV
        :. ::.:: ..:.::.:....:. .:. : . . .:.:..::..::.  ... . ::..
NP_001 ENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILL
        70        80        90       100       110       120       

     110            
pF1KB6 VVIVIYFFT    
       .::.:        
NP_001 LVIIILIVMKYRT
       130       140

>>NP_003753 (OMIM: 606909) vesicle-associated membrane p  (141 aa)
 initn: 258 init1: 237 opt: 270  Z-score: 262.4  bits: 54.1 E(85289): 7.1e-08
Smith-Waterman score: 270; 35.8% identity (78.9% similar) in 95 aa overlap (20-114:40-133)

                          10        20        30        40         
pF1KB6            MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIR
                                     :: ::  .   : .....: ::.::.:...
NP_003 NDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFG-PRNDKIKHVQNQVDEVIDVMQ
      10        20        30        40         50        60        

      50        60        70        80        90       100         
pF1KB6 VNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIV
        :. ::.:: ..:.::.:....:. .:. : . . .:.:..::..::.  ... . ::..
NP_003 ENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILL
       70        80        90       100       110       120        

     110            
pF1KB6 VVIVIYFFT    
       .::.:        
NP_003 LVIIILIVMKYRT
      130       140 




118 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:08:53 2016 done: Sat Nov  5 20:08:54 2016
 Total Scan time:  5.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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