Result of FASTA (omim) for pF1KB6457
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6457, 318 aa
  1>>>pF1KB6457 318 - 318 aa - 318 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7558+/-0.00031; mu= 15.2978+/- 0.020
 mean_var=96.8729+/-19.456, 0's: 0 Z-trim(118.5): 81  B-trim: 56 in 1/50
 Lambda= 0.130309
 statistics sampled from 31460 (31547) to 31460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.37), width:  16
 Scan time:  8.230

The best scores are:                                      opt bits E(85289)
NP_057105 (OMIM: 616175) ubiquitin-conjugating enz ( 318) 2122 408.7  8e-114
XP_011534190 (OMIM: 616175) PREDICTED: ubiquitin-c ( 235) 1531 297.5 1.8e-80
XP_011534189 (OMIM: 616175) PREDICTED: ubiquitin-c ( 278) 1285 251.3 1.7e-66
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147)  263 58.9 7.2e-09
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193)  258 58.1 1.7e-08
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189)  255 57.5 2.5e-08
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167)  254 57.3 2.6e-08
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201)  254 57.4 2.9e-08
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201)  254 57.4 2.9e-08
NP_001189405 (OMIM: 602916) ubiquitin-conjugating  ( 160)  250 56.5 4.2e-08
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207)  243 55.3 1.3e-07
NP_001265483 (OMIM: 604151) ubiquitin-conjugating  ( 207)  243 55.3 1.3e-07
NP_001265484 (OMIM: 604151) ubiquitin-conjugating  ( 207)  243 55.3 1.3e-07
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207)  243 55.3 1.3e-07
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207)  243 55.3 1.3e-07
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  239 54.4 1.6e-07
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  239 54.4 1.6e-07
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  239 54.4 1.6e-07
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  239 54.4 1.6e-07
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  239 54.4 1.6e-07
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  239 54.4 1.6e-07
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  239 54.4 1.6e-07
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148)  239 54.4 1.6e-07
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147)  238 54.2 1.9e-07
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152)  229 52.6 6.2e-07
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149)  225 51.8   1e-06
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176)  216 50.2 3.8e-06
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173)  214 49.8 4.8e-06
NP_003333 (OMIM: 601569) ubiquitin-conjugating enz ( 170)  208 48.7   1e-05
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152)  202 47.5 2.1e-05
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152)  197 46.6   4e-05
NP_075567 (OMIM: 611362) ubiquitin-conjugating enz ( 354)  190 45.5 0.00019
NP_003334 (OMIM: 603124) ubiquitin-conjugating enz ( 165)  183 43.9 0.00026
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118)  178 42.9 0.00039
NP_001287724 (OMIM: 602963) ubiquitin-conjugating  ( 118)  178 42.9 0.00039
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118)  178 42.9 0.00039
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200)  179 43.3 0.00051
NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154)  176 42.6 0.00062
NP_001104582 (OMIM: 602846) ubiquitin-conjugating  ( 157)  174 42.2 0.00082
NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222)  174 42.4  0.0011
XP_006723015 (OMIM: 116948) PREDICTED: ubiquitin-c ( 179)  170 41.5  0.0015
XP_011516251 (OMIM: 612506) PREDICTED: ubiquitin-c ( 193)  169 41.4  0.0018
NP_004350 (OMIM: 116948) ubiquitin-conjugating enz ( 236)  170 41.6  0.0019
XP_005259747 (OMIM: 116948) PREDICTED: ubiquitin-c ( 269)  170 41.7  0.0021
XP_011525054 (OMIM: 610309) PREDICTED: ubiquitin-c ( 162)  167 40.9  0.0021
NP_060281 (OMIM: 612506) ubiquitin-conjugating enz ( 238)  169 41.4  0.0021
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179)  167 41.0  0.0023
XP_016884424 (OMIM: 603721) PREDICTED: ubiquitin-c ( 121)  164 40.3  0.0025
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110)  158 39.1  0.0051


>>NP_057105 (OMIM: 616175) ubiquitin-conjugating enzyme   (318 aa)
 initn: 2122 init1: 2122 opt: 2122  Z-score: 2164.5  bits: 408.7 E(85289): 8e-114
Smith-Waterman score: 2122; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB6 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTFQGATASTSYGVQNSSAASFHQP
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
NP_057 RQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTFQGATASTSYGLQNSSAASFHQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TQPVAKNTSMSPRQRRAQQQSQRRLSTSPDVIQGHQPRDNHTDHGGSAVLIVILTLALAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TQPVAKNTSMSPRQRRAQQQSQRRLSTSPDVIQGHQPRDNHTDHGGSAVLIVILTLALAA
              250       260       270       280       290       300

              310        
pF1KB6 LIFRRIYLANEYIFDFEL
       ::::::::::::::::::
NP_057 LIFRRIYLANEYIFDFEL
              310        

>>XP_011534190 (OMIM: 616175) PREDICTED: ubiquitin-conju  (235 aa)
 initn: 1553 init1: 1531 opt: 1531  Z-score: 1565.8  bits: 297.5 E(85289): 1.8e-80
Smith-Waterman score: 1531; 99.6% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KB6 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTFQGATASTSYGVQNSSAASFHQP
       ::::::::::::::::::::::::::::::::::::::::::::::.             
XP_011 RQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTFQGATASTSFQTKFLKIS     
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB6 TQPVAKNTSMSPRQRRAQQQSQRRLSTSPDVIQGHQPRDNHTDHGGSAVLIVILTLALAA

>>XP_011534189 (OMIM: 616175) PREDICTED: ubiquitin-conju  (278 aa)
 initn: 1282 init1: 1282 opt: 1285  Z-score: 1314.9  bits: 251.3 E(85289): 1.7e-66
Smith-Waterman score: 1787; 87.1% identity (87.4% similar) in 318 aa overlap (1-318:1-278)

               10        20        30        40        50        60
pF1KB6 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTFQGATASTSYGVQNSSAASFHQP
       ::::::                                        ::.:::::::::::
XP_011 RQISFK----------------------------------------YGLQNSSAASFHQP
                                                      190       200

              250       260       270       280       290       300
pF1KB6 TQPVAKNTSMSPRQRRAQQQSQRRLSTSPDVIQGHQPRDNHTDHGGSAVLIVILTLALAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPVAKNTSMSPRQRRAQQQSQRRLSTSPDVIQGHQPRDNHTDHGGSAVLIVILTLALAA
              210       220       230       240       250       260

              310        
pF1KB6 LIFRRIYLANEYIFDFEL
       ::::::::::::::::::
XP_011 LIFRRIYLANEYIFDFEL
              270        

>>NP_003329 (OMIM: 602961) ubiquitin-conjugating enzyme   (147 aa)
 initn: 223 init1: 202 opt: 263  Z-score: 280.2  bits: 58.9 E(85289): 7.2e-09
Smith-Waterman score: 263; 36.6% identity (69.6% similar) in 112 aa overlap (11-119:2-110)

               10        20         30        40        50         
pF1KB6 METRYNLKSPAVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYH
                 :.::..:: ..: .::  :  : :. :.::.:. :. ::::: ..:::. 
NP_003          MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFF
                        10        20        30        40        50 

      60        70        80          90       100       110       
pF1KB6 GRIVLPPEYPMKPPSIILLTANGRFEVGKK--ICLSISGHHPETWQPSWSIRTALLAIIG
         . .: .::.:::.: . :   . .....  :::.:   .   :.:. ..  .::.: .
NP_003 LTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ---WSPALTVSKVLLSICS
              60        70        80        90          100        

       120       130       140       150       160       170       
pF1KB6 FMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAK
       ..                                                          
NP_003 LLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM                     
      110       120       130       140                            

>>NP_003332 (OMIM: 602916) ubiquitin-conjugating enzyme   (193 aa)
 initn: 188 init1: 188 opt: 258  Z-score: 273.6  bits: 58.1 E(85289): 1.7e-08
Smith-Waterman score: 258; 33.3% identity (65.2% similar) in 135 aa overlap (1-130:38-169)

                                             10        20          
pF1KB6                               METRYNLKSPAVKRLMKEAAELK-DPTDHY
                                     :    .: : ..::..:: :..  ::  . 
NP_003 ASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNC
        10        20        30        40        50        60       

      30        40        50        60        70        80         
pF1KB6 HAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKK
        : :  ::..::. :. ::: : ..:::.   :.. ::::.:::.. . :   . .....
NP_003 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ
        70        80        90       100       110       120       

        90       100       110       120         130       140     
pF1KB6 --ICLSISGHHPETWQPSWSIRTALLAIIGFMP--TKGEGAIGSLDYTPEERRALAKKSQ
         :::.:     ..:.:. .:  .::.: ...   . ..  .::.               
NP_003 GVICLDI---LKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMA
       130          140       150       160       170       180    

         150       160       170       180       190       200     
pF1KB6 DFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELARQISFKAEVNSSGKTISESDLNHSF
                                                                   
NP_003 RQWTKRYAT                                                   
          190                                                      

>>XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-conju  (189 aa)
 initn: 184 init1: 184 opt: 255  Z-score: 270.6  bits: 57.5 E(85289): 2.5e-08
Smith-Waterman score: 255; 35.0% identity (66.7% similar) in 120 aa overlap (9-125:54-170)

                                     10        20         30       
pF1KB6                       METRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDN
                                     : ..::..:: ::.  ::  .  : :  ::
XP_005 RESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDN
            30        40        50        60        70        80   

        40        50        60        70        80          90     
pF1KB6 LFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKK--ICLSIS
       ..::. :. ::: : ..:::.   :.. :.::.:::.. . :   . .....  :::.: 
XP_005 IYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL
            90       100       110       120       130       140   

         100       110       120       130       140       150     
pF1KB6 GHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSA
           ..:.:. .:  .::.: ...   . :                              
XP_005 ---KDNWSPALTISKVLLSICSLLTDCNPGDFEAWPALPPSQLKWNLLP           
              150       160       170       180                    

>>XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-conju  (167 aa)
 initn: 188 init1: 188 opt: 254  Z-score: 270.3  bits: 57.3 E(85289): 2.6e-08
Smith-Waterman score: 254; 33.9% identity (66.1% similar) in 121 aa overlap (10-127:14-131)

                   10        20         30        40        50     
pF1KB6     METRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDG
                    :. .:..:: :..  ::  .  : :  ::..::. :. ::: : ..:
XP_005 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEG
               10        20        30        40        50        60

          60        70        80          90       100       110   
pF1KB6 GVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKK--ICLSISGHHPETWQPSWSIRTALL
       ::.   :.. ::::.:::.. . :   . .....  :::.:     ..:.:. .:  .::
XP_005 GVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI---LKDNWSPALTISKVLL
               70        80        90       100          110       

           120       130       140       150       160       170   
pF1KB6 AIIGFMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQAD
       .: ...   . : .                                              
XP_005 SICSLLTDCNPGKVHNSLPCFILPYLKNTCFQKLSKDKTNFSAQVCEYKN          
       120       130       140       150       160                 

>>XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-conju  (201 aa)
 initn: 184 init1: 184 opt: 254  Z-score: 269.3  bits: 57.4 E(85289): 2.9e-08
Smith-Waterman score: 254; 33.9% identity (66.9% similar) in 127 aa overlap (9-130:54-177)

                                     10        20         30       
pF1KB6                       METRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDN
                                     : ..::..:: ::.  ::  .  : :  ::
XP_005 RESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDN
            30        40        50        60        70        80   

        40        50        60        70        80          90     
pF1KB6 LFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKK--ICLSIS
       ..::. :. ::: : ..:::.   :.. :.::.:::.. . :   . .....  :::.: 
XP_005 IYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL
            90       100       110       120       130       140   

         100       110       120         130       140       150   
pF1KB6 GHHPETWQPSWSIRTALLAIIGFMP--TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCG
           ..:.:. .:  .::.: ...   . ..  .::.                       
XP_005 ---KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA
              150       160       170       180       190       200

           160       170       180       190       200       210   
pF1KB6 SAMKDVLLPLKSGSDSSQADQEAKELARQISFKAEVNSSGKTISESDLNHSFSLTDLQDD
                                                                   
XP_005 T                                                           
                                                                   

>>NP_689866 (OMIM: 602163) ubiquitin-conjugating enzyme   (201 aa)
 initn: 184 init1: 184 opt: 254  Z-score: 269.3  bits: 57.4 E(85289): 2.9e-08
Smith-Waterman score: 254; 33.9% identity (66.9% similar) in 127 aa overlap (9-130:54-177)

                                     10        20         30       
pF1KB6                       METRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDN
                                     : ..::..:: ::.  ::  .  : :  ::
NP_689 RESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDN
            30        40        50        60        70        80   

        40        50        60        70        80          90     
pF1KB6 LFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKK--ICLSIS
       ..::. :. ::: : ..:::.   :.. :.::.:::.. . :   . .....  :::.: 
NP_689 IYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL
            90       100       110       120       130       140   

         100       110       120         130       140       150   
pF1KB6 GHHPETWQPSWSIRTALLAIIGFMP--TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCG
           ..:.:. .:  .::.: ...   . ..  .::.                       
NP_689 ---KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA
              150       160       170       180       190       200

           160       170       180       190       200       210   
pF1KB6 SAMKDVLLPLKSGSDSSQADQEAKELARQISFKAEVNSSGKTISESDLNHSFSLTDLQDD
                                                                   
NP_689 T                                                           
                                                                   

>>NP_001189405 (OMIM: 602916) ubiquitin-conjugating enzy  (160 aa)
 initn: 188 init1: 188 opt: 250  Z-score: 266.5  bits: 56.5 E(85289): 4.2e-08
Smith-Waterman score: 250; 33.3% identity (66.7% similar) in 126 aa overlap (10-130:14-136)

                   10        20         30        40        50     
pF1KB6     METRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDG
                    :. .:..:: :..  ::  .  : :  ::..::. :. ::: : ..:
NP_001 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEG
               10        20        30        40        50        60

          60        70        80          90       100       110   
pF1KB6 GVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKK--ICLSISGHHPETWQPSWSIRTALL
       ::.   :.. ::::.:::.. . :   . .....  :::.:     ..:.:. .:  .::
NP_001 GVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL---KDNWSPALTISKVLL
               70        80        90       100          110       

           120         130       140       150       160       170 
pF1KB6 AIIGFMP--TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQ
       .: ...   . ..  .::.                                         
NP_001 SICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT                 
       120       130       140       150       160                 




318 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:02:40 2016 done: Fri Nov  4 23:02:41 2016
 Total Scan time:  8.230 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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