Result of FASTA (ccds) for pF1KB7651
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7651, 330 aa
  1>>>pF1KB7651 330 - 330 aa - 330 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0489+/-0.000959; mu= 8.4218+/- 0.058
 mean_var=358.3709+/-75.318, 0's: 0 Z-trim(115.7): 147  B-trim: 141 in 1/53
 Lambda= 0.067750
 statistics sampled from 16139 (16300) to 16139 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.501), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS7510.1 TLX1 gene_id:3195|Hs108|chr10           ( 330) 2285 236.5 2.2e-62
CCDS55725.1 TLX1 gene_id:3195|Hs108|chr10          ( 257) 1812 190.1 1.6e-48
CCDS1947.1 TLX2 gene_id:3196|Hs108|chr2            ( 284)  866 97.7 1.2e-20
CCDS34288.1 TLX3 gene_id:30012|Hs108|chr5          ( 291)  852 96.4   3e-20


>>CCDS7510.1 TLX1 gene_id:3195|Hs108|chr10                (330 aa)
 initn: 2285 init1: 2285 opt: 2285  Z-score: 1233.3  bits: 236.5 E(32554): 2.2e-62
Smith-Waterman score: 2285; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)

               10        20        30        40        50        60
pF1KB7 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 RRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHN
              250       260       270       280       290       300

              310       320       330
pF1KB7 SSLFALQNLQPWSDDSTKITSVTSVASACE
       ::::::::::::::::::::::::::::::
CCDS75 SSLFALQNLQPWSDDSTKITSVTSVASACE
              310       320       330

>>CCDS55725.1 TLX1 gene_id:3195|Hs108|chr10               (257 aa)
 initn: 1812 init1: 1812 opt: 1812  Z-score: 984.5  bits: 190.1 E(32554): 1.6e-48
Smith-Waterman score: 1812; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KB7 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 RRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHN
       :::::::::::::::::                                           
CCDS55 TDAQVKTWFQNRRTKWR                                           
              250                                                  

>>CCDS1947.1 TLX2 gene_id:3196|Hs108|chr2                 (284 aa)
 initn: 1021 init1: 715 opt: 866  Z-score: 484.4  bits: 97.7 E(32554): 1.2e-20
Smith-Waterman score: 1043; 55.5% identity (68.8% similar) in 337 aa overlap (4-327:6-282)

                 10        20        30        40        50        
pF1KB7   MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYG
            ::::.: : : :::::::::::..:.  :          :  :::         :
CCDS19 MEPGMLGPHNL-PHH-EPISFGIDQILSGPETPG----------GGLGLG--------RG
               10          20        30                          40

       60        70        80         90       100       110       
pF1KB7 GGGSAAATGAGGAGAYGTGGPGGPG-GPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGG
       : :       :  ::.. :  :. : ::::     :..:: ::        .: ::::  
CCDS19 GQGH------GENGAFSGGYHGASGYGPAG-----SLAPLPGS--------SGVGPGG--
                     50        60             70                   

       120       130       140       150       160       170       
pF1KB7 GSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWM
                    ::::::::::      : : : : :.::.  .. :...:.:::::::
CCDS19 -------------VIRVPAHRPLP----VPPP-AGGAPAVPGPSGLGGAGGLAGLTFPWM
                   80        90            100       110       120 

       180                   190       200       210       220     
pF1KB7 ESNRRYTKDRFT------------GHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKY
       .:.::..:::.:            :::::::::::.:::::::.: :. :::.:: ::::
CCDS19 DSGRRFAKDRLTAALSPFSGTRRIGHPYQNRTPPKRKKPRTSFSRSQVLELERRFLRQKY
             130       140       150       160       170       180 

         230       240       250       260       270       280     
pF1KB7 LASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQK
       :::::::::::::.:::::::::::::::::::::::::::::..:.:.::.:::.:. .
CCDS19 LASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLLLHLQQDALPR
             190       200       210       220       230       240 

         290       300       310       320       330
pF1KB7 SLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
        :  ::: ::::.::::::::::::::..:. :..::...::   
CCDS19 PLRPPLPPDPLCLHNSSLFALQNLQPWAEDN-KVASVSGLASVV 
             250       260       270        280     

>>CCDS34288.1 TLX3 gene_id:30012|Hs108|chr5               (291 aa)
 initn: 1111 init1: 792 opt: 852  Z-score: 476.9  bits: 96.4 E(32554): 3e-20
Smith-Waterman score: 1127; 59.6% identity (71.7% similar) in 332 aa overlap (10-325:11-290)

                10        20        30        40        50         
pF1KB7  MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGG
                 :: : :::::::::::::::: .  .:: :  ::   ::           
CCDS34 MEAPASAQTPHP-H-EPISFGIDQILNSPDQDS--APAPRGPDGASYLG-----------
               10          20        30          40                

      60        70        80        90         100       110       
pF1KB7 GGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPL--TGSYNVNMALAGGPGPGGGG
              :  : :  :.  :. :.. :: :.     :.  .:::.::..::  :      
CCDS34 -------GPPG-GRPGATYPSLPASFAGLGA-----PFEDAGSYSVNLSLA--P------
                  50        60             70        80            

       120       130       140       150       160       170       
pF1KB7 GSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWM
                  :::::::::::: :::  : :: ..::..::::.   :..: ::.::::
CCDS34 -----------AGVIRVPAHRPLPGAV--PPPLPSALPAMPSVPT---VSSLGGLNFPWM
                      90       100         110          120        

       180                     190       200       210       220   
pF1KB7 ESNRRYTKDRFT--------------GHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQ
       ::.::..:::::              :::::::::::.:::::::.:.::::::::::::
CCDS34 ESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQ
      130       140       150       160       170       180        

           230       240       250       260       270       280   
pF1KB7 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAF
       :::::::::::::.::::::::::::::::::::::::::::::::::.:..::::..::
CCDS34 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLMLQLQHDAF
      190       200       210       220       230       240        

           290       300       310       320       330
pF1KB7 QKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
       :::: . .  ::::.:::::::::::::: .::.:. .:::.     
CCDS34 QKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSLV    
      250       260       270       280       290     




330 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:25:15 2016 done: Fri Nov  4 21:25:16 2016
 Total Scan time:  2.770 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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