Result of FASTA (ccds) for pF1KB6531
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6531, 366 aa
  1>>>pF1KB6531 366 - 366 aa - 366 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2058+/-0.000818; mu= 8.1957+/- 0.049
 mean_var=109.4918+/-21.810, 0's: 0 Z-trim(111.0): 31  B-trim: 430 in 1/52
 Lambda= 0.122570
 statistics sampled from 11996 (12026) to 11996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.369), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS8861.1 TARBP2 gene_id:6895|Hs108|chr12         ( 366) 2424 439.0 3.1e-123
CCDS41791.1 TARBP2 gene_id:6895|Hs108|chr12        ( 345) 2284 414.2 8.4e-116
CCDS46460.1 PRKRA gene_id:8575|Hs108|chr2          ( 302)  332 69.0 6.1e-12
CCDS46461.1 PRKRA gene_id:8575|Hs108|chr2          ( 288)  329 68.5 8.4e-12
CCDS2279.1 PRKRA gene_id:8575|Hs108|chr2           ( 313)  329 68.5 9.1e-12


>>CCDS8861.1 TARBP2 gene_id:6895|Hs108|chr12              (366 aa)
 initn: 2424 init1: 2424 opt: 2424  Z-score: 2325.8  bits: 439.0 E(32554): 3.1e-123
Smith-Waterman score: 2424; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
              310       320       330       340       350       360

             
pF1KB6 IMAGSK
       ::::::
CCDS88 IMAGSK
             

>>CCDS41791.1 TARBP2 gene_id:6895|Hs108|chr12             (345 aa)
 initn: 2284 init1: 2284 opt: 2284  Z-score: 2192.4  bits: 414.2 E(32554): 8.4e-116
Smith-Waterman score: 2284; 100.0% identity (100.0% similar) in 345 aa overlap (22-366:1-345)

               10        20        30        40        50        60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
                            :::::::::::::::::::::::::::::::::::::::
CCDS41                      MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
                                    10        20        30         

               70        80        90       100       110       120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
     100       110       120       130       140       150         

              190       200       210       220       230       240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
     160       170       180       190       200       210         

              250       260       270       280       290       300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
     220       230       240       250       260       270         

              310       320       330       340       350       360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
     280       290       300       310       320       330         

             
pF1KB6 IMAGSK
       ::::::
CCDS41 IMAGSK
     340     

>>CCDS46460.1 PRKRA gene_id:8575|Hs108|chr2               (302 aa)
 initn: 949 init1: 325 opt: 332  Z-score: 327.9  bits: 69.0 E(32554): 6.1e-12
Smith-Waterman score: 865; 44.3% identity (67.8% similar) in 357 aa overlap (10-366:3-302)

               10        20        30        40        50        60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
                .:  ::. :. .:..:.::::::..:.::: .  . :::.  ... : : :
CCDS46        MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVP
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
       .::::::::: .:::.: ::: :::.:::.:.. ::... .  :. :     ::   .:.
CCDS46 TFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL---MPD
            60        70        80        90       100             

              130       140       150       160       170       180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
                     ::    ..:  .:           ::.:.::::....::::::::.
CCDS46 --------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLPEYTL
                           110                  120       130      

              190       200       210       220       230       240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
       .::.::::..:.:  ::.: :.: :.:.::: :::::: :.: .           ... :
CCDS46 SQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------SNISP
        140       150       160       170       180                

              250       260       270       280       290       300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
       .. :.:      : .. ... :::: ::::: ::::  :.  :: :.        ..:::
CCDS46 EN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--QLLSE
         190             200       210       220        230        

              310       320       330       340       350       360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
       ...::.:...::::.::: .:  :::.::::.: ::::::. .   :...::. ::::::
CCDS46 IAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLK
        240       250       260       270       280       290      

             
pF1KB6 IMAGSK
       :.:  :
CCDS46 IIAERK
        300  

>>CCDS46461.1 PRKRA gene_id:8575|Hs108|chr2               (288 aa)
 initn: 925 init1: 320 opt: 329  Z-score: 325.4  bits: 68.5 E(32554): 8.4e-12
Smith-Waterman score: 839; 44.6% identity (67.8% similar) in 345 aa overlap (22-366:1-288)

               10        20        30        40        50        60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
                            :..:.::::::..:.::: .  . :::.  ... : : :
CCDS46                      MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVP
                                    10        20        30         

               70        80        90       100       110       120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
       .::::::::: .:::.: ::: :::.:::.:.. ::... .  :. :     ::   .:.
CCDS46 TFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL---MPD
      40        50        60        70        80                90 

              130       140       150       160       170       180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
                     ::    ..:  .:           ::.:.::::....::::::::.
CCDS46 --------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLPEYTL
                               100                  110       120  

              190       200       210       220       230       240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
       .::.::::..:.:  ::.: :.: :.:.::: :::::: :.: .           ... :
CCDS46 SQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------SNISP
            130       140       150       160                 170  

              250       260       270       280       290       300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
       .. :.:      : .. ... :::: ::::: ::::  :.  :: :.        ..:::
CCDS46 EN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--QLLSE
                   180       190       200        210         220  

              310       320       330       340       350       360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
       ...::.:...::::.::: .:  :::.::::.: ::::::. .   :...::. ::::::
CCDS46 IAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLK
            230       240       250       260       270       280  

             
pF1KB6 IMAGSK
       :.:  :
CCDS46 IIAERK
             

>>CCDS2279.1 PRKRA gene_id:8575|Hs108|chr2                (313 aa)
 initn: 931 init1: 320 opt: 329  Z-score: 324.8  bits: 68.5 E(32554): 9.1e-12
Smith-Waterman score: 848; 44.3% identity (67.6% similar) in 352 aa overlap (15-366:19-313)

                   10        20        30        40        50      
pF1KB6     MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ
                         :  :. .:..:.::::::..:.::: .  . :::.  ... :
CCDS22 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS
        : :.::::::::: .:::.: ::: :::.:::.:.. ::... .  :. :     ::  
CCDS22 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL--
               70        80        90       100       110          

        120       130       140       150       160       170      
pF1KB6 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP
        .:.              ::           ::     ... ::.:.::::....:::::
CCDS22 -MPD--------------PS----------KQP-----KNQLNPIGSLQELAIHHGWRLP
                                    120            130       140   

        180       190       200       210       220       230      
pF1KB6 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN
       :::..::.::::..:.:  ::.: :.: :.:.::: :::::: :.: .           .
CCDS22 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S
           150       160       170       180       190             

        240       250       260       270       280       290      
pF1KB6 EVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCR
       .. :.. :.:      : .. ... :::: ::::: ::::  :.  :: :.        .
CCDS22 NISPEN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--Q
            200             210       220       230        240     

        300       310       320       330       340       350      
pF1KB6 VLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRAL
       .:::...::.:...::::.::: .:  :::.::::.: ::::::. .   :...::. ::
CCDS22 LLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNAL
           250       260       270       280       290       300   

        360      
pF1KB6 QYLKIMAGSK
       :::::.:  :
CCDS22 QYLKIIAERK
           310   




366 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:17:27 2016 done: Sat Nov  5 01:17:28 2016
 Total Scan time:  3.170 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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