Result of FASTA (ccds) for pF1KB6374
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6374, 276 aa
  1>>>pF1KB6374 276 - 276 aa - 276 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7029+/-0.00105; mu= 0.2207+/- 0.063
 mean_var=206.7946+/-41.924, 0's: 0 Z-trim(110.4): 36  B-trim: 93 in 1/51
 Lambda= 0.089188
 statistics sampled from 11518 (11550) to 11518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.355), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS310.1 STX12 gene_id:23673|Hs108|chr1           ( 276) 1741 236.2 1.9e-62
CCDS5153.1 STX7 gene_id:8417|Hs108|chr6            ( 261)  900 128.0 6.9e-30
CCDS6384.1 TSNARE1 gene_id:203062|Hs108|chr8       ( 513)  446 69.8 4.5e-12
CCDS78369.1 TSNARE1 gene_id:203062|Hs108|chr8      ( 277)  418 66.0 3.4e-11


>>CCDS310.1 STX12 gene_id:23673|Hs108|chr1                (276 aa)
 initn: 1741 init1: 1741 opt: 1741  Z-score: 1234.6  bits: 236.2 E(32554): 1.9e-62
Smith-Waterman score: 1741; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:1-276)

               10        20        30        40        50        60
pF1KB6 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRA
              190       200       210       220       230       240

              250       260       270      
pF1KB6 AYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       ::::::::::::::::::::::::::::::::::::
CCDS31 AYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
              250       260       270      

>>CCDS5153.1 STX7 gene_id:8417|Hs108|chr6                 (261 aa)
 initn: 667 init1: 667 opt: 900  Z-score: 650.1  bits: 128.0 E(32554): 6.9e-30
Smith-Waterman score: 900; 53.8% identity (84.6% similar) in 266 aa overlap (8-270:1-257)

               10        20        30        40        50        60
pF1KB6 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
              :  .:: .:    : ... :  :.:::.:.: ...:.  ..:::: ::: .:.
CCDS51        MSYTPGVGG----DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELR
                          10        20        30        40         

               70        80        90       100       110       120
pF1KB6 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
       ..::: :. ::::::::.. .::.::::   . :::::...::.::. .:...:.::: :
CCDS51 QQLQQKQQYTNQLAKETDKYIKEFGSLP--TTPSEQRQRKIQKDRLVAEFTTSLTNFQKV
      50        60        70          80        90       100       

              130       140          150       160       170       
pF1KB6 QRRVSEKEKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQD
       ::...:.::: .::.::.::.:.   :. ..:..:::..:. .  :.: :..:  :::.:
CCDS51 QRQAAEREKEFVARVRASSRVSGSFPEDSSKERNLVSWESQTQ-PQVQVQDEE--ITEDD
       110       120       130       140       150          160    

       180       190       200       210       220       230       
pF1KB6 LELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQL
       :.::.:::..::::::::.:.:.:::::.::::.:::.:::::::::..::::..:..::
CCDS51 LRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQL
          170       180       190       200       210       220    

       240       250       260       270      
pF1KB6 QRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       .::: ::.:::: .::..:.: . . :..::::      
CCDS51 SRAADYQRKSRKTLCIIILILVIGVAIISLIIWGLNH  
          230       240       250       260   

>>CCDS6384.1 TSNARE1 gene_id:203062|Hs108|chr8            (513 aa)
 initn: 384 init1: 262 opt: 446  Z-score: 330.3  bits: 69.8 E(32554): 4.5e-12
Smith-Waterman score: 446; 33.3% identity (65.9% similar) in 273 aa overlap (5-265:238-507)

                                         10        20          30  
pF1KB6                           MSYGPLDMYRNPGPSGPQLR--DFSSIIQTCSGN
                                     : . .    : . :.   ... ..:  :.:
CCDS63 GPSPGSGKPQALALTPVEQVVAKTFSCQALPSEGFSLEPPRATQVDPCNLQELFQEMSAN
       210       220       230       240       250       260       

             40        50        60        70        80        90  
pF1KB6 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLS
       . ::........  ...::: .:...:...:.  :. ::.    .   .:... : :  :
CCDS63 VFRINSSVTSLERSLQSLGTPSDTQELRDSLHTAQQETNKTIAASASSVKQMAEL-LRSS
       270       280       290       300       310       320       

              100       110       120       130       140          
pF1KB6 TSEQR--QQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARARAGSRLSAE----ER
         ..:  :.: : .:: ...: :.. . .::....:: .  .  :. ::. : .    : 
CCDS63 CPQERLQQERPQLDRLKTQLSDAIQCYGVVQKKIAEKSRALLPMAQRGSKQSPQAPFAEL
        330       340       350       360       370       380      

        150       160       170       180       190       200      
pF1KB6 QREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLA
         .:..  :.. ..  : : :     :::.::: :. :: :: :.:...::::::.::::
CCDS63 ADDEKV--FNGSDNMWQGQEQALLPDITEEDLEAIRLREEAILQMESNLLDVNQIIKDLA
        390         400       410       420       430       440    

        210       220       230       240        250          260  
pF1KB6 MMIHDQGDLIDSIEANVESSEVHVERATEQLQRAAYYQKKSRK-KMCIL---VLVLSVII
        :. .::. .:::::..:..  :.: : . :  :. .: . .: : :.:   : .: :::
CCDS63 SMVSEQGEAVDSIEASLEAASSHAEAARQLLAGASRHQLQRHKIKCCFLSAGVTALLVII
          450       460       470       480       490       500    

            270      
pF1KB6 LILGLIIWLVYKTK
       .:.           
CCDS63 IIIATSVRK     
          510        

>>CCDS78369.1 TSNARE1 gene_id:203062|Hs108|chr8           (277 aa)
 initn: 454 init1: 239 opt: 418  Z-score: 314.6  bits: 66.0 E(32554): 3.4e-11
Smith-Waterman score: 418; 32.9% identity (64.3% similar) in 258 aa overlap (2-250:14-269)

                           10          20          30        40    
pF1KB6             MSYGPLDMYRNPG--PSGPQLR--DFSSIIQTCSGNIQRISQATAQIK
                    : ::.      :  : . :.   ... ..:  :.:. ::........
CCDS78 MSYGSIARGGGLGSRGPFGGPSRQGCQPLATQVDPCNLQELFQEMSANVFRINSSVTSLE
               10        20        30        40        50        60

           50        60        70        80        90        100   
pF1KB6 NLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQ-RLQK
         ...::: .:...:...:.  :. ::.    .   .:... : :  :  :. :: : : 
CCDS78 RSLQSLGTPSDTQELRDSLHTAQQETNKTIAASASSVKQMAEL-LRSSCPERLQQERPQL
               70        80        90       100        110         

           110       120       130       140           150         
pF1KB6 ERLMNDFSAALNNFQAVQRRVSEKEKESIARARAGSRLSAEE----RQREEQLVSFDSHE
       .:: ...: :.. . .::....:: .  .  :. ::. .. .    .  ... :   : .
CCDS78 DRLKTQLSDAIQCYGVVQKKIAEKSRALLPMAQRGSKQQSPQAPFAELADDEKVFNGSDN
     120       130       140       150       160       170         

     160       170       180       190       200       210         
pF1KB6 EWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSI
        : : : :     :::.::: :. :: :: :.:...::::::.:::: :. .::. .:::
CCDS78 MW-QGQEQALLPDITEEDLEAIRLREEAILQMESNLLDVNQIIKDLASMVSEQGEAVDSI
     180        190       200       210       220       230        

     220       230       240       250       260       270      
pF1KB6 EANVESSEVHVERATEQLQRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       ::..:..  :.: : . :  :. .:   : .                          
CCDS78 EASLEAASSHAEAARQLLAGASRHQLMRRTRPPAACGCP                  
      240       250       260       270                         




276 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:49:09 2016 done: Fri Nov  4 22:49:09 2016
 Total Scan time:  2.350 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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