GENSCAN 1.0	Date run:  4-Nov-116	Time: 22:49:35

Sequence gi568815597f:27673308_27922326 : 249019 bp : 45.13% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    432    427    6                               1.05
 1.02 Term -  14111  13849  263  0  2   78   47   268 0.351  17.39
 1.01 Init -  16366  16309   58  1  1   58   70    48 0.713   1.47
 1.00 Prom -  21600  21561   40                              -1.16

 2.00 Prom +  24450  24489   40                              -4.46
 2.01 Init +  52774  52854   81  0  0  103   91   149 0.981  17.67
 2.02 Intr +  54165  54229   65  2  2   99   65    89 0.996   5.22
 2.03 Intr +  59296  59350   55  1  1   80  127    34 0.993   5.48
 2.04 Intr +  60724  60876  153  0  0   91   94   121 0.995  13.27
 2.05 Intr +  65878  66075  198  0  0    3   35   145 0.191   0.25
 2.06 Intr +  66688  67104  417  0  0   33    5   263 0.069   6.72
 2.07 Intr +  71347  71504  158  0  2  138   91    67 0.840  10.81
 2.08 Intr +  81888  82023  136  0  1   28   86   155 0.957   9.87
 2.09 Intr +  86219  86320  102  1  0   95   62    87 0.966   7.17
 2.10 Intr +  95624  95722   99  1  0   41   93    53 0.105   1.41
 2.11 Intr +  99917 100171  255  1  0   77   68   233 0.166  17.84
 2.12 Intr + 119634 119687   54  2  0  101   91     4 0.257   1.18
 2.13 Intr + 128371 128508  138  0  0   67   84    74 0.280   5.56
 2.14 Intr + 136939 136982   44  0  2   64   90    18 0.140  -3.36
 2.15 Intr + 138856 138961  106  1  1   83   78   169 0.892  15.62
 2.16 Intr + 144544 144616   73  0  1  121   76    63 0.988   7.38
 2.17 Term + 146343 146473  131  1  2  129   47    72 0.093   5.54
 2.18 PlyA + 146618 146623    6                               1.05

 3.00 Prom + 147395 147434   40                              -2.46
 3.01 Init + 157529 157584   56  1  2  100  105    61 0.965   9.34
 3.02 Intr + 159449 159509   61  2  1  111   64    11 0.554  -0.26
 3.03 Intr + 165392 165545  154  1  1   23   86   115 0.977   4.45
 3.04 Intr + 167707 168067  361  2  1   75   46   173 0.778   6.08
 3.05 Intr + 169140 169185   46  0  1  113   36    14 0.769  -2.89
 3.06 Intr + 169879 170023  145  0  1   41   94   167 0.908  12.46
 3.07 Intr + 173721 173785   65  1  2  109   97    -2 0.954   1.24
 3.08 Term + 176786 177139  354  1  0   34   40   264 0.987  10.69
 3.09 PlyA + 178341 178346    6                               1.05

 4.00 Prom + 191300 191339   40                              -4.46
 4.01 Init + 199265 199358   94  1  1  109   84   153 0.994  17.33
 4.02 Intr + 203281 203421  141  2  0   79   86   189 0.787  18.12
 4.03 Intr + 206337 206747  411  1  0  135   79   323 0.961  30.26
 4.04 Intr + 208664 209736 1073  0  2   95   74  1049 0.523  94.15
 4.05 Intr + 211988 212144  157  1  1   99   95    91 0.873  10.48
 4.06 Term + 214338 214390   53  1  2   77   55    60 0.415  -0.81
 4.07 PlyA + 216193 216198    6                               1.05

 5.10 PlyA - 217767 217762    6                               1.05
 5.09 Term - 218940 218856   85  2  1  150   36   104 0.999   8.53
 5.08 Intr - 220799 220705   95  2  2   67  108    43 0.991   2.96
 5.07 Intr - 221090 220983  108  2  0   40   91    52 0.689   1.18
 5.06 Intr - 223814 223698  117  2  0   70  109   106 0.977  11.56
 5.05 Intr - 224400 224326   75  0  0   66  103    29 0.772   1.91
 5.04 Intr - 233734 233621  114  1  0  103   95   131 0.989  15.94
 5.03 Intr - 233975 233874  102  2  0  107   91    39 0.985   6.47
 5.02 Intr - 240862 240756  107  2  2   71   39   152 0.970   8.53
 5.01 Intr - 241434 241115  320  2  2   65   33   254 0.711  13.20

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  87188  87274   87  1  0   96   48    75 0.926   1.96
S.002 Intr + 146343 146425   83  1  2  129   98    77 0.860  12.16


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:27673308_27922326|GENSCAN_predicted_peptide_1|106_aa
MKLKESAVSDLGAKPSSDFRVLLSDWPGDNTLFQLKFMVKQLEKPDKKAEKHSYANQAKV
KKSLQQKNVECTRVYTKNTICKENSSVNWLYMASAWTQWPPRCRQL

>gi568815597f:27673308_27922326|GENSCAN_predicted_CDS_1|321_bp
atgaaattgaaagagagtgctgtgtcagaccttggtgctaaaccaagttcagatttcagg
gtgcttctgtcagactggccaggggacaataccctgttccagttgaaatttatggtgaag
cagctggagaaaccagacaagaaggcagaaaagcactcctacgccaaccaggccaaagtg
aagaagtcccttcagcagaaaaatgtagagtgcacccgtgtgtacaccaagaacaccatc
tgcaaggagaacagcagcgtgaactggctctacatggcatccgcctggacacagtggccc
ccgaggtgcagacagctgtga

>gi568815597f:27673308_27922326|GENSCAN_predicted_peptide_2|754_aa
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKDA
GGKAGAPIVCMLNQGLKHVSEGCVFAYCQVEEKPYWKDPNNDFRKNLEVTTVPTLLKYGT
PQKLQPGQFRGQVPPYSRLWVHLDVMDGHFVPNVTFGYPVVESFQKQLVQDLFFDIHVMV
SKLEQWVKSIAIAEASQYTFHLEATKYSEALIEDIWENGMKVGLTIKPGTTVEYLAPWTN
QIDTALVITVEPGFGRQKFMDDMVDGKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRAGHQ
EKEQYSRLSGGGHYNSFSPDLALDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEK
KITELKADFQYQESQMRAKMNQMEKTHKEVTEQLQFGTSKNKYCYELHNNTKLETMQTSI
NKRMDNQTFLRQPAGPGWRLLPVGERCRASRSQLLVMSYGPLDMYRNPGPSGPQLRDFSS
IIQTCSGNIQRISQASEPGYRAGGRELSRGQAWVRLLCFGGKSQKLRYKEQRQQRLQKER
LMNDFSAALNNFQAVQRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQ
SQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVES
SEVHVERATEQLQRAAYYQVKAGTKESHSVLQTF

>gi568815597f:27673308_27922326|GENSCAN_predicted_CDS_2|2265_bp
atggcggcgctctacgcctgcaccaagtgccaccagcgcttccccttcgaggcgctgtct
caggggcagcagctgtgcaaggaatgtcggattgcacaccctgttgtgaagtgcacctac
tgcaggactgagtaccagcaggagagtaaaaccaatacaatatgcaagaaatgtgctcag
aacgtgcagttgtatggaacgcccaaaccttgtcagtattgcaacataattgcagcattt
attgggaataaatgccagcgctgcacaaattcagaaaagaagtatggaccaccctattct
tgtgaacagtgcaagcagcagtgtgcatttgacaggaaagatgatagaaagaaggatgct
ggaggaaaagctggtgcccctattgtatgcatgctgaaccaggggctgaagcatgttagt
gaaggatgtgtgttcgcctactgccaagtagaagaaaagccttattggaaagatccaaat
aatgacttcagaaaaaacttggaagtaaccacagtgcctacactacttaaatatggaaca
cctcaaaaactgcaacctggccagtttaggggtcaagtgcctccgtattctagactctgg
gtccacctggatgtcatggatgggcactttgttcccaacgtcacctttggttatcctgtg
gtagaaagctttcaaaagcagctagtccaggaccttttctttgacatacatgtgatggtg
tccaagctggaacagtgggtaaaatcaatagctatagcagaagccagtcagtacaccttt
catcttgaggctactaagtactcagaggctttgattgaagacatttgggagaatgggatg
aaggttggccttaccatcaaaccaggaactacagttgagtatttggcaccatggactaat
caaatagatacggccttggttatcacagtggaacctgggtttggaaggcagaaattcatg
gatgatatggtagatgggaaattgctgtgctggctgtgcacactttcatacaaacgggtc
cttcagaagaccaaagagcagaggaaacacctgagtagctcttctcgtgctggccaccag
gagaaggagcagtatagtcgcctgagtggtggtggccattataacagcttctccccagac
ctggctctggactcaccaggcactgaccactttgtcatcattgcccaactgaaggaagaa
gtggctaccctgaagaagatgttgcatcaaaaggatcaaatgattttagagaaagagaag
aagattacagagttgaaggctgattttcagtaccaggaatcgcagatgagagccaaaatg
aaccagatggagaaaacccacaaagaagtcacagaacaactgcagtttggaactagtaaa
aataaatactgctatgaacttcataataacaccaaattggaaacaatgcaaacatccatc
aataagagaatggataatcaaacttttctccgtcagcctgcgggtcccggctggcggctg
cttccggtaggagagcggtgtagagcgagcaggtctcagctcctcgtcatgtcatacggt
cccttagacatgtaccggaacccggggccctcggggccccagctccgggacttcagcagc
atcatccagacgtgcagcggcaacatccagcggatcagccaagccagtgagccggggtac
cgagctggggggcgggagctgtcccggggacaggcctgggtaaggcttctttgttttgga
gggaagagccagaaactcaggtataaagagcagcgccagcagagacttcagaaggaacgc
ctcatgaatgacttctctgcagccttaaacaatttccaggctgtgcagagaagggtatct
gaaaaggaaaaggagagtattgccagagcaagagctggatctcgtctttctgcagaagag
aggcaaagagaggagcagctggtctcatttgacagccatgaggagtggaaccagatgcag
agccaggaggatgaggtggccatcactgagcaggatttggaacttattaaagaaagagaa
acggcaattcggcagctggaggctgacattttggatgtcaatcagatatttaaagatttg
gccatgatgatccatgaccagggtgatctgattgatagcatagaagccaatgtggaaagc
tcagaggtgcacgtcgaaagagccactgaacagttacagcgagctgcttactatcaggta
aaagcgggtaccaaagaaagtcactctgtgttgcagactttttag

>gi568815597f:27673308_27922326|GENSCAN_predicted_peptide_3|413_aa
MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF
TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDVIPCLCHCFVFGDPGF
WSIQLFYVAGNASDLAAGGSLESSNGPLAIWPPYPGCCYTSMAFSSNLTEFNTAHNKRIS
TLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRV
EGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLA
PDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI

>gi568815597f:27673308_27922326|GENSCAN_predicted_CDS_3|1242_bp
atggcggcagccgcgaactccggctctagcctcccgctgttcgactgcccaacctgggca
ggtaagccccctcccggtttacatctggatgtagtcaaaggagacaaactaattgagaaa
ctgattattgatgagaagaagtattacttatttgggagaaaccctgatttgtgtgacttt
accattgaccaccagtcttgctctcgggtccatgctgcacttgtctaccacaagcatctg
aagagagttttcctgatagatctcaacagtacacacggcactttcttgggtcacattcgg
ttggaacctcacaagcctcagcaaattcccatcgattccacggtctcatttggcgcatcc
acaagggcatacactctgcgcgagaagcctcagacattgccatcggctgtgaaaggagat
gagaagatgggtggagaggatgatgaactcaagggcttactggggcttccagaggaggaa
actgagcttgatgtaattccctgtttatgtcattgttttgtctttggggaccctggtttt
tggagtatacagctgttctatgtagctggaaatgccagtgacttagcagcagggggttct
cttgagtccagtaatgggcctttggcaatctggccaccttatccaggctgctgctatact
tccatggcttttagttcaaacctgacagagttcaacactgcccacaacaagcggatttct
acccttaccattgaggagggaaatctggacattcaaagaccaaagaggaagaggaagaac
tcacgggtgacattcagtgaggatgatgagatcatcaacccagaggatgtggatccctca
gttggtcgattcaggaacatggtgcaaactgcagtggtcccagtcaagaagaagcgtgtg
gagggccctggctccctgggcctggaggaatcagggagcaggcgcatgcagaactttgcc
ttcagcggaggactctacgggggcctgccccccacacacagtgaagcaggctcccagcca
catggcatccatgggacagcactcatcggtggcttgcccatgccatacccaaaccttgcc
cctgatgtggacttgactcctgttgtgccgtcagcagtgaacatgaaccctgcaccaaac
cctgcagtctataaccctgaagctgtaaatgaacccaagaagaagaaatatgcaaaagag
gcttggccaggcaagaagcccacaccttccttgctgatttga

>gi568815597f:27673308_27922326|GENSCAN_predicted_peptide_4|642_aa
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ
VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHMRRTIVKIPSTLEVDVEDVTASSRH
VHFIKPLLLSEVLAWEGPFPLSMEILEVPEGRPIFLSPWVGSLQKGQRLCVYGLASPPWR
VLASSKGRKVPRHFLVSGGYQGKLRRRPREFPTAYDLLGAFQPGRPLRVVATKDCEGERE
ENPEFTSLAVGDRLEVLGPGQAHGAQGSDVDVLVCQRLSDQAGEDEEEECKEEAESPERV
LLPFHFPGSFVEEMSDSRRYSLADLTAQFSLPCEVKVVAKDTSHPTDPLTSFLGLRLEEK
ITEPFLVVSLDSEPGMCFEIPPRWLDLTVVKAKGQPDLPEGSLPIATVEELTDTFYYRLR
KLPACEIQAPPPRPPKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLPKPKAKTLPEFIKD
GSSTYSKIPAHRKGHRPAKPQRQDLAPMPFSREVNLRCKGGP

>gi568815597f:27673308_27922326|GENSCAN_predicted_CDS_4|1929_bp
atggagccggtgccgctgcaggacttcgtgcgcgccttggaccccgcctccctcccgcgc
gtgctgcgggtctgctcgggggtctacttcgagggctccatctatgagatctctgggaat
gagtgctgcctctccacgggggacctgatcaaggtcacccaggtccgcctccagaaggtg
gtctgtgagaacccgaagaccagccagaccatggagctcgcccccaacttccagggctac
ttcacccccctcaacaccccacagagctatgaaaccctggaggagctggtctctgccaca
actcagagctccaagcagctgcccacttgcttcatgtcgacccacaggattgtcacagag
ggcagggtggtgactgaggaccagctcctcatgcttgaggctgtggtgatgcacctcggg
atccgctctgcccgctgtgtcctgggcatggagggtcagcaggtcatcctgcacctgccc
ctatcccagaaggggcccttctggacatgggagcctagtgcccctcgaactctgctccag
gtcctacaggatccagccctgaaagacctcgtcctcacctgccccaccctgccctggcat
tccctgatcctgcggccccagtatgagatccaagccatcatgcacatgcgcaggaccatt
gtcaagatcccttctaccctggaggtcgacgtggaggacgtcaccgcctcctcccggcac
gtccactttatcaaaccgctgctgctgagcgaggtcctggcctgggaaggccctttcccc
ctgtccatggagatcctggaggttcctgagggccgccccatcttcctcagcccgtgggtg
ggctccttgcaaaaaggccagaggctttgcgtctatggcctagcctcaccaccctggcgg
gtcctggcctcaagcaagggccgcaaggtgcccaggcacttcctggtgtcagggggctac
caaggcaagctgcggcggcggccaagggagttccccacggcctatgacctcctaggtgct
ttccagccaggccggccactccgggtggtggccacaaaggactgtgagggcgagagggag
gagaatcccgagttcacgtccctggctgtgggtgaccggctggaggtgctggggcctggc
caggcccatggggcccagggcagtgacgtggatgtcttggtttgtcagcggctgagtgac
caggctggggaggatgaggaggaagagtgcaaagaggaggcagagagcccagagcgggtc
ctgctgcccttccacttccctggcagtttcgtggaggagatgagtgacagccggcgctac
agcctggcagatctgactgcccagttttcactgccttgtgaggtcaaggtggtggccaag
gacaccagccaccccactgaccctctgacctccttcctgggcctgcggctggaggagaag
atcacagagccattcttggtggtgagcctagactctgagcctgggatgtgctttgagatc
cctccccggtggctggacctgactgttgtgaaggccaaggggcagccagacttgccagag
gggtctctccccatagccacagtggaggagctgacagacaccttctattatcgtcttcgg
aagttaccagcctgtgagatccaagcccccccacccaggccccctaaaaatcagggcctc
agcaagcagaggagacacagcagtgagggaggcgtcaagtcttctcaagtcttaggattg
cagcaacacgctcggctgcccaaacccaaggcgaagaccttgccagagttcatcaaggat
ggctccagtacgtacagcaagattcctgcccacaggaagggccacaggcccgctaagccc
caaaggcaggatctagctcccatgcccttctccagagaagtcaacctgcgctgcaaagga
ggaccctga

>gi568815597f:27673308_27922326|GENSCAN_predicted_peptide_5|374_aa
XAEGFALRKDGRGGFWSQLGAQYAFSGAWAEETGTSVASVSTDWLKRAPRELTGSAIRGK
AFVVPEKSSQSGAVAAAFCGFPLFPQTRTFSASLRRIVTKMWNSNDGGGFESYGSSSYGG
AGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTI
VGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ
NKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGG
NSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY
STVDDDHFKSTDAE

>gi568815597f:27673308_27922326|GENSCAN_predicted_CDS_5|1125_bp
nntgcggagggttttgcccttcgtaaagatggccgcggaggcttttggagccaactggga
gcgcagtacgcgttttctggagcatgggcagaggagacaggaacaagcgtagcatccgtg
agcaccgattggctgaagcgagcaccccgggagctgactggctccgccattcgcgggaag
gcgtttgtggtgccagagaaaagtagccagagcggcgcagtggcggccgcgttctgtggt
tttccgctattcccccagacccgcaccttctcggcctctttgcggagaatcgtgaccaag
atgtggaacagtaatgatgggggtggattcgaaagctatggcagctcctcatacggggga
gccggcggctacacgcagtccccggggggctttggatcgcccgcaccttctcaagccgaa
aagaaatcaagagcccgagcccagcacattgtgccctgtactatatctcagctgctttct
gccactttggttgatgaagtgttcagaattgggaatgttgagatttcacaggtcactatt
gtggggatcatcagacatgcagagaaggctccaaccaacattgtttacaaaatagatgac
atgacagctgcacccatggacgttcgccagtgggttgacacagatgacaccagcagtgaa
aacactgtggttcctccagaaacatatgtgaaagtggcaggccacctgagatcttttcag
aacaaaaagagcctggtagcctttaagatcatgcccctggaggatatgaatgagttcacc
acacatattctggaagtgatcaatgcacacatggtactaagcaaagccaacagccagccc
tcagcagggagagcacctatcagcaatccaggaatgagtgaagcagggaactttggtggg
aatagcttcatgccagcaaatggcctcactgtggcccaaaaccaggtgttgaatttgatt
aaggcttgtccaagacctgaagggttgaactttcaggatctcaagaaccagctgaaacac
atgtctgtatcctcaatcaagcaagctgtggattttctgagcaatgaggggcacatctat
tctactgtggatgatgaccattttaaatccacagatgcagaataa