Result of FASTA (ccds) for pF1KB7227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7227, 220 aa
  1>>>pF1KB7227 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3817+/-0.000831; mu= 13.2927+/- 0.050
 mean_var=62.5773+/-12.503, 0's: 0 Z-trim(105.9): 26  B-trim: 0 in 0/54
 Lambda= 0.162131
 statistics sampled from 8648 (8668) to 8648 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS11955.1 STARD6 gene_id:147323|Hs108|chr18      ( 220) 1477 353.9 4.7e-98
CCDS10318.1 STARD5 gene_id:80765|Hs108|chr15       ( 213)  483 121.4 4.4e-28
CCDS4104.1 STARD4 gene_id:134429|Hs108|chr5        ( 205)  379 97.0   9e-21
CCDS54118.1 STARD3 gene_id:10948|Hs108|chr17       ( 427)  281 74.3 1.4e-13
CCDS11341.1 STARD3 gene_id:10948|Hs108|chr17       ( 445)  281 74.3 1.4e-13
CCDS54117.1 STARD3 gene_id:10948|Hs108|chr17       ( 445)  281 74.3 1.4e-13
CCDS6102.1 STAR gene_id:6770|Hs108|chr8            ( 285)  275 72.8 2.5e-13


>>CCDS11955.1 STARD6 gene_id:147323|Hs108|chr18           (220 aa)
 initn: 1477 init1: 1477 opt: 1477  Z-score: 1873.9  bits: 353.9 E(32554): 4.7e-98
Smith-Waterman score: 1477; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KB7 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLS
              130       140       150       160       170       180

              190       200       210       220
pF1KB7 PSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
       ::::::::::::::::::::::::::::::::::::::::
CCDS11 PSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
              190       200       210       220

>>CCDS10318.1 STARD5 gene_id:80765|Hs108|chr15            (213 aa)
 initn: 475 init1: 336 opt: 483  Z-score: 617.6  bits: 121.4 E(32554): 4.4e-28
Smith-Waterman score: 483; 34.4% identity (65.1% similar) in 209 aa overlap (1-204:1-209)

               10           20        30        40        50       
pF1KB7 MDFKAIAQQT---AQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPES
       ::    ::..   :...: : :::.:::. . .. ..:: . : .: ::::: :::.  .
CCDS10 MDPALAAQMSEAVAEKMLQYRRDTAGWKICREGNGVSVSWRPSVEFPGNLYRGEGIVYGT
               10        20        30        40        50        60

        60          70        80        90       100       110     
pF1KB7 PAKLSDFLYQT--GDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLV
         .. : .  .  : :. ::...  ..... : .   . .: : : :.  ::::::.:::
CCDS10 LEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLV
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB7 YIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEM
        .:::: .    ..  :. :  ::. ...::.:::::  : :.  .:. ..:: : .:..
CCDS10 LVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDL
              130       140       150       160       170       180

         180       190       200       210       220
pF1KB7 RGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
        : :  ..... .: ... :  : . ..:                
CCDS10 SGYLPQNVVDSFFPRSMTRFYANLQKAVKQFHE            
              190       200       210               

>>CCDS4104.1 STARD4 gene_id:134429|Hs108|chr5             (205 aa)
 initn: 324 init1: 203 opt: 379  Z-score: 486.4  bits: 97.0 E(32554): 9e-21
Smith-Waterman score: 379; 29.7% identity (63.6% similar) in 195 aa overlap (2-195:6-197)

                   10         20        30        40        50     
pF1KB7     MDFKAIAQQTAQEVLGYNR-DTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIP
            :  ..: .  . .. :.  . . :.:.: .: .::  : :..:.: ::...:.: 
CCDS41 MEGLSDVASFATKLKNTLIQYHSIEEDKWRVAKKTKDVTVWRKPSEEFNGYLYKAQGVID
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB7 ESPAKLSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLV
       .   .. : .     :. ::. .   .... .. .  . .  : .   . ::::.:.:. 
CCDS41 DLVYSIIDHIRPGPCRLDWDSLMTSLDILENFEENCCVMRYTTAGQLWNIISPREFVDFS
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB7 YIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEM
       :   :. .. .  . :.:. :  :  ...::::::::. : :...::  : :. ..::..
CCDS41 YTVGYKEGL-LSCGISLDWDEKRP--EFVRGYNHPCGWFCVPLKDNPNQSLLTGYIQTDL
               130       140         150       160       170       

         180       190       200       210       220
pF1KB7 RGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
       :: .  : .. .: :.:.::                         
CCDS41 RGMIPQSAVDTAMASTLTNFYGDLRKAL                 
       180       190       200                      

>>CCDS54118.1 STARD3 gene_id:10948|Hs108|chr17            (427 aa)
 initn: 183 init1:  86 opt: 281  Z-score: 357.5  bits: 74.3 E(32554): 1.4e-13
Smith-Waterman score: 281; 24.2% identity (62.1% similar) in 182 aa overlap (24-203:241-420)

                      10        20        30        40        50   
pF1KB7        MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGI
                                     ::  :...   .       :::. . .. .
CCDS54 KSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTF
              220       230       240       250       260       270

            60          70        80        90       100       110 
pF1KB7 IPESPAKL--SDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDF
       .:  ::.:  .. . :    . :.:.. . ....:....:.: . .. . : : .:::::
CCDS54 LP-CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDF
               280       290       300       310       320         

             120       130       140       150       160       170 
pF1KB7 IDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFV
       ...  :.: .  . . :. ...    ::. .:.:: : : ::.      ::    .: ..
CCDS54 VNVRRIERRRDRY-LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWIL
     330       340        350       360       370       380        

             180       190       200       210       220
pF1KB7 QTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
       .:...:.:   .:.... ... .: .. .. :                 
CCDS54 NTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA          
      390       400       410       420                 

>>CCDS11341.1 STARD3 gene_id:10948|Hs108|chr17            (445 aa)
 initn: 183 init1:  86 opt: 281  Z-score: 357.2  bits: 74.3 E(32554): 1.4e-13
Smith-Waterman score: 281; 24.2% identity (62.1% similar) in 182 aa overlap (24-203:259-438)

                      10        20        30        40        50   
pF1KB7        MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGI
                                     ::  :...   .       :::. . .. .
CCDS11 KSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTF
      230       240       250       260       270       280        

            60          70        80        90       100       110 
pF1KB7 IPESPAKL--SDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDF
       .:  ::.:  .. . :    . :.:.. . ....:....:.: . .. . : : .:::::
CCDS11 LP-CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDF
      290        300       310       320       330       340       

             120       130       140       150       160       170 
pF1KB7 IDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFV
       ...  :.: .  . . :. ...    ::. .:.:: : : ::.      ::    .: ..
CCDS11 VNVRRIERRRDRY-LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWIL
       350       360        370       380       390       400      

             180       190       200       210       220
pF1KB7 QTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
       .:...:.:   .:.... ... .: .. .. :                 
CCDS11 NTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA          
        410       420       430       440               

>>CCDS54117.1 STARD3 gene_id:10948|Hs108|chr17            (445 aa)
 initn: 183 init1:  86 opt: 281  Z-score: 357.2  bits: 74.3 E(32554): 1.4e-13
Smith-Waterman score: 281; 24.2% identity (62.1% similar) in 182 aa overlap (24-203:259-438)

                      10        20        30        40        50   
pF1KB7        MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGI
                                     ::  :...   .       :::. . .. .
CCDS54 KSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTF
      230       240       250       260       270       280        

            60          70        80        90       100       110 
pF1KB7 IPESPAKL--SDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDF
       .:  ::.:  .. . :    . :.:.. . ....:....:.: . .. . : : .:::::
CCDS54 LP-CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDF
      290        300       310       320       330       340       

             120       130       140       150       160       170 
pF1KB7 IDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFV
       ...  :.: .  . . :. ...    ::. .:.:: : : ::.      ::    .: ..
CCDS54 VNVRRIERRRDRY-LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWIL
       350       360        370       380       390       400      

             180       190       200       210       220
pF1KB7 QTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
       .:...:.:   .:.... ... .: .. .. :                 
CCDS54 NTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA          
        410       420       430       440               

>>CCDS6102.1 STAR gene_id:6770|Hs108|chr8                 (285 aa)
 initn: 241 init1: 119 opt: 275  Z-score: 352.7  bits: 72.8 E(32554): 2.5e-13
Smith-Waterman score: 275; 23.8% identity (63.9% similar) in 202 aa overlap (8-206:80-278)

                                      10        20        30       
pF1KB7                        MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSS
                                     ... :..::   .  :::  : :.. . ..
CCDS61 NQVRRRSSLLGSRLEETLYSDQELAYLQQGEEAMQKALGILSNQEGWK--KESQQDNGDK
      50        60        70        80        90         100       

        40          50        60        70         80        90    
pF1KB7 KASRKFH--GNLYRVEGIIPESPAKLSDFLYQTGDRI-TWDKSLQVYNMVHRIDSDTFIC
         :.     :...:.: .. .   .: . : .  . .  :. ...  .....: .:::: 
CCDS61 VMSKVVPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFIT
       110       120       130       140       150       160       

          100       110       120       130       140       150    
pF1KB7 HTITQSFAVGSISPRDFIDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFV
       : ..   : . ..::::...   :: .:.  .... ..:: ..: ... ::. . :  .:
CCDS61 HELAAEAAGNLVGPRDFVSVRCAKR-RGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMV
       170       180       190        200       210       220      

          160       170       180       190       200       210    
pF1KB7 CSPMEENPAYSKLVMFVQTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGF
         :.  .:. .::. ... ...: :  :::.... .. :.:  . .  ...:        
CCDS61 LHPLAGSPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLESHPASEARC 
        230       240       250       260       270       280      

          220
pF1KB7 HHNSHS




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 09:44:01 2016 done: Sat Nov  5 09:44:01 2016
 Total Scan time:  2.010 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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