Result of FASTA (ccds) for pF1KB6408
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6408, 335 aa
  1>>>pF1KB6408 335 - 335 aa - 335 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3046+/-0.000812; mu= 16.2576+/- 0.049
 mean_var=73.6913+/-14.782, 0's: 0 Z-trim(108.1): 50  B-trim: 0 in 0/52
 Lambda= 0.149405
 statistics sampled from 9959 (10009) to 9959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.307), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS1207.1 SLAMF1 gene_id:6504|Hs108|chr1          ( 335) 2209 485.3  3e-137
CCDS81389.1 SLAMF1 gene_id:6504|Hs108|chr1         ( 357) 1759 388.3 4.9e-108
CCDS1210.1 CD244 gene_id:51744|Hs108|chr1          ( 365)  275 68.5 9.8e-12
CCDS53399.1 CD244 gene_id:51744|Hs108|chr1         ( 370)  263 65.9   6e-11


>>CCDS1207.1 SLAMF1 gene_id:6504|Hs108|chr1               (335 aa)
 initn: 2209 init1: 2209 opt: 2209  Z-score: 2577.6  bits: 485.3 E(32554): 3e-137
Smith-Waterman score: 2209; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KB6 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPLQKKLDSFPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPLQKKLDSFPAQ
              250       260       270       280       290       300

              310       320       330     
pF1KB6 DPCTTIYVAATEPVPESVQETNSITVYASVTLPES
       :::::::::::::::::::::::::::::::::::
CCDS12 DPCTTIYVAATEPVPESVQETNSITVYASVTLPES
              310       320       330     

>>CCDS81389.1 SLAMF1 gene_id:6504|Hs108|chr1              (357 aa)
 initn: 1747 init1: 1747 opt: 1759  Z-score: 2053.0  bits: 388.3 E(32554): 4.9e-108
Smith-Waterman score: 1759; 91.6% identity (94.6% similar) in 297 aa overlap (1-293:1-294)

               10        20        30        40        50        60
pF1KB6 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
              190       200       210       220       230       240

              250       260       270       280           290      
pF1KB6 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQK--PG--PLQKKLDS
       :::::::::::::::::::::::.  .   :: .  : .. .: :.  ::  :. :.   
CCDS81 YAGLLGGVIMILIMVVILQLRRRATLT---TTNQYWSQNVLTQDQERCPGCLPMVKRTIT
              250       260          270       280       290       

        300       310       320       330                          
pF1KB6 FPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES                     
                                                                   
CCDS81 RQQWKKKALRSMPKSRNQVLFRRNLTPSQLRTLAPPYMLLPQSLSQSLSRKQIPSQSMLV
       300       310       320       330       340       350       

>>CCDS1210.1 CD244 gene_id:51744|Hs108|chr1               (365 aa)
 initn: 178 init1: 114 opt: 275  Z-score: 324.1  bits: 68.5 E(32554): 9.8e-12
Smith-Waterman score: 282; 24.1% identity (55.3% similar) in 320 aa overlap (35-330:1-315)

           10        20        30        40        50        60    
pF1KB6 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
                                     .: :. . .:: :     .:. . :  :.:
CCDS12                               MLGQVVTLILLLLLKVYQGKGCQGSADHVV
                                             10        20        30

            70           80                         90       100   
pF1KB6 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
          .  :.   ::...:. :     : ::. :            :    .::..: ..::
CCDS12 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
               40        50        60        70        80        90

           110       120        130       140       150       160  
pF1KB6 TLGIRESRKEDEGWYLMTLEK-NVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLIL
       .: :. ....: : : . . . . .::   .:. ....:  :...  .:  . : : . :
CCDS12 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFDKVEKPRLQGQGKILDRGRCQVAL
              100       110       120       130       140       150

            170       180       190       200       210       220  
pF1KB6 GCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTF
       .: : .  .:.:.: .  :.. .. :..   :.  .   .. . : :.::::.: .:.:.
CCDS12 SCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSWESHTL
              160         170       180        190       200       

            230       240       250       260       270       280  
pF1KB6 SPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYA
       .    :..  .: . :   . ..    ..:  .. . . :: . .. . :  :. :::: 
CCDS12 NLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEFLTIYE
       210       220       230       240       250       260       

              290       300       310       320       330          
pF1KB6 QVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES     
       .:.  :    ... ..::.       .. .   .: : ::  . :.:. .          
CCDS12 DVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRKSGSRK
       270       280       290       300         310       320     

CCDS12 RNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
         330       340       350       360     

>>CCDS53399.1 CD244 gene_id:51744|Hs108|chr1              (370 aa)
 initn: 178 init1: 114 opt: 263  Z-score: 310.1  bits: 65.9 E(32554): 6e-11
Smith-Waterman score: 270; 23.7% identity (54.2% similar) in 325 aa overlap (35-330:1-320)

           10        20        30        40        50        60    
pF1KB6 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
                                     .: :. . .:: :     .:. . :  :.:
CCDS53                               MLGQVVTLILLLLLKVYQGKGCQGSADHVV
                                             10        20        30

            70           80                         90       100   
pF1KB6 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
          .  :.   ::...:. :     : ::. :            :    .::..: ..::
CCDS53 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
               40        50        60        70        80        90

           110       120             130       140       150       
pF1KB6 TLGIRESRKEDEGWYLMTLE------KNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGT
       .: :. ....: : : . .       .... : : ..  : ..:  :...  .:  . : 
CCDS53 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFESLLPDKVEKPRLQGQGKILDRGR
              100       110       120       130       140       150

       160       170       180       190       200       210       
pF1KB6 CTLILGCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISN
       : . :.: : .  .:.:.: .  :.. .. :..   :.  .   .. . : :.::::.: 
CCDS53 CQVALSCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSW
              160       170         180       190        200       

       220       230       240       250       260       270       
pF1KB6 NSQTFSPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKS
       .:.:..    :..  .: . :   . ..    ..:  .. . . :: . .. . :  :. 
CCDS53 ESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEF
       210       220       230       240       250       260       

       280         290       300       310       320       330     
pF1KB6 LTIYAQVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
       :::: .:.  :    ... ..::.       .. .   .: : ::  . :.:. .     
CCDS53 LTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRK
       270       280       290       300        310        320     

CCDS53 SGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
         330       340       350       360       370




335 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:51:05 2016 done: Fri Nov  4 20:51:06 2016
 Total Scan time:  2.040 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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