Result of FASTA (ccds) for pF1KB6393
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6393, 276 aa
  1>>>pF1KB6393 276 - 276 aa - 276 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7269+/-0.000681; mu= 13.3128+/- 0.041
 mean_var=77.2070+/-15.779, 0's: 0 Z-trim(111.3): 90  B-trim: 560 in 1/49
 Lambda= 0.145964
 statistics sampled from 12170 (12269) to 12170 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.377), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS6370.1 SLA gene_id:6503|Hs108|chr8             ( 276) 1870 402.7 1.5e-112
CCDS47922.1 SLA gene_id:6503|Hs108|chr8            ( 293) 1870 402.7 1.6e-112
CCDS47923.1 SLA gene_id:6503|Hs108|chr8            ( 316) 1870 402.7 1.7e-112
CCDS64977.1 SLA gene_id:6503|Hs108|chr8            ( 168) 1120 244.6 3.5e-65
CCDS64978.1 SLA gene_id:6503|Hs108|chr8            ( 249)  803 177.9 6.1e-45
CCDS13282.1 SLA2 gene_id:84174|Hs108|chr20         ( 261)  630 141.5 5.8e-34
CCDS13283.1 SLA2 gene_id:84174|Hs108|chr20         ( 210)  472 108.2   5e-24
CCDS54456.1 HCK gene_id:3055|Hs108|chr20           ( 504)  336 79.8 4.4e-15
CCDS54455.1 HCK gene_id:3055|Hs108|chr20           ( 505)  336 79.8 4.4e-15
CCDS54453.1 HCK gene_id:3055|Hs108|chr20           ( 525)  336 79.8 4.5e-15
CCDS33460.1 HCK gene_id:3055|Hs108|chr20           ( 526)  336 79.8 4.5e-15
CCDS83251.1 BLK gene_id:640|Hs108|chr8             ( 434)  321 76.6 3.5e-14
CCDS5982.1 BLK gene_id:640|Hs108|chr8              ( 505)  321 76.6 3.9e-14
CCDS359.1 LCK gene_id:3932|Hs108|chr1              ( 509)  317 75.8 7.1e-14
CCDS47859.1 LYN gene_id:4067|Hs108|chr8            ( 491)  316 75.6 7.9e-14
CCDS6162.1 LYN gene_id:4067|Hs108|chr8             ( 512)  316 75.6 8.2e-14
CCDS5103.1 FRK gene_id:2444|Hs108|chr6             ( 505)  313 74.9 1.3e-13
CCDS305.1 FGR gene_id:2268|Hs108|chr1              ( 529)  304 73.0 4.9e-13
CCDS5094.1 FYN gene_id:2534|Hs108|chr6             ( 537)  302 72.6 6.6e-13
CCDS11824.1 YES1 gene_id:7525|Hs108|chr18          ( 543)  299 72.0   1e-12
CCDS5095.1 FYN gene_id:2534|Hs108|chr6             ( 534)  289 69.9 4.4e-12


>>CCDS6370.1 SLA gene_id:6503|Hs108|chr8                  (276 aa)
 initn: 1870 init1: 1870 opt: 1870  Z-score: 2134.0  bits: 402.7 E(32554): 1.5e-112
Smith-Waterman score: 1870; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:1-276)

               10        20        30        40        50        60
pF1KB6 MGNSMKSTPAPAERPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MGNSMKSTPAPAERPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDTKVGSFMIRESETKKGFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 AISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDTKVGSFMIRESETKKGFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SLSVRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEVADGLCCVLTTPCLTQST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SLSVRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEVADGLCCVLTTPCLTQST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDESLFSYGLRESIASYLSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 AAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDESLFSYGLRESIASYLSLT
              190       200       210       220       230       240

              250       260       270      
pF1KB6 SEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED
       ::::::::::::::::::::::::::::::::::::
CCDS63 SEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED
              250       260       270      

>>CCDS47922.1 SLA gene_id:6503|Hs108|chr8                 (293 aa)
 initn: 1870 init1: 1870 opt: 1870  Z-score: 2133.6  bits: 402.7 E(32554): 1.6e-112
Smith-Waterman score: 1870; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:18-293)

                                10        20        30        40   
pF1KB6                  MGNSMKSTPAPAERPLPNPEGLDSDFLAVLSDYPSPDISPPIF
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLHRLWASPAAPGKKKEMGNSMKSTPAPAERPLPNPEGLDSDFLAVLSDYPSPDISPPIF
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KB6 RRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDT
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB6 KVGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KVGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEV
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KB6 ADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDES
              190       200       210       220       230       240

           230       240       250       260       270      
pF1KB6 LFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED
              250       260       270       280       290   

>>CCDS47923.1 SLA gene_id:6503|Hs108|chr8                 (316 aa)
 initn: 1870 init1: 1870 opt: 1870  Z-score: 2133.1  bits: 402.7 E(32554): 1.7e-112
Smith-Waterman score: 1870; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:41-316)

                                             10        20        30
pF1KB6                               MGNSMKSTPAPAERPLPNPEGLDSDFLAVL
                                     ::::::::::::::::::::::::::::::
CCDS47 GGLRARLTFPVCLLYHRLWASPAAPGKKKEMGNSMKSTPAPAERPLPNPEGLDSDFLAVL
               20        30        40        50        60        70

               40        50        60        70        80        90
pF1KB6 SDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLG
               80        90       100       110       120       130

              100       110       120       130       140       150
pF1KB6 RDKAEELLQLPDTKVGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RDKAEELLQLPDTKVGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTF
              140       150       160       170       180       190

              160       170       180       190       200       210
pF1KB6 QCLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QCLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQED
              200       210       220       230       240       250

              220       230       240       250       260       270
pF1KB6 PEGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PEGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSS
              260       270       280       290       300       310

             
pF1KB6 PPYFED
       ::::::
CCDS47 PPYFED
             

>>CCDS64977.1 SLA gene_id:6503|Hs108|chr8                 (168 aa)
 initn: 1120 init1: 1120 opt: 1120  Z-score: 1283.7  bits: 244.6 E(32554): 3.5e-65
Smith-Waterman score: 1120; 100.0% identity (100.0% similar) in 168 aa overlap (109-276:1-168)

       80        90       100       110       120       130        
pF1KB6 RVYHGWLFEGLGRDKAEELLQLPDTKVGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLP
                                     ::::::::::::::::::::::::::::::
CCDS64                               MIRESETKKGFYSLSVRHRQVKHYRIFRLP
                                             10        20        30

      140       150       160       170       180       190        
pF1KB6 NNWYYISPRLTFQCLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 NNWYYISPRLTFQCLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKT
               40        50        60        70        80        90

      200       210       220       230       240       250        
pF1KB6 VDWRRVSRLQEDPEGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VDWRRVSRLQEDPEGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMY
              100       110       120       130       140       150

      260       270      
pF1KB6 GGSKRKSSFFSSPPYFED
       ::::::::::::::::::
CCDS64 GGSKRKSSFFSSPPYFED
              160        

>>CCDS64978.1 SLA gene_id:6503|Hs108|chr8                 (249 aa)
 initn: 1541 init1: 803 opt: 803  Z-score: 920.4  bits: 177.9 E(32554): 6.1e-45
Smith-Waterman score: 1457; 84.1% identity (84.1% similar) in 276 aa overlap (1-276:18-249)

                                10        20        30        40   
pF1KB6                  MGNSMKSTPAPAERPLPNPEGLDSDFLAVLSDYPSPDISPPIF
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS64 MLHRLWASPAAPGKKKEMGNSMKSTPAPAERPLPNPEGLDSDFLAVLSDYPSPDISPPIF
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KB6 RRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDT
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB6 KVGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEV
       ::::::::::::::                                            ::
CCDS64 KVGSFMIRESETKK--------------------------------------------EV
              130                                                  

           170       180       190       200       210       220   
pF1KB6 ADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDES
        140       150       160       170       180       190      

           230       240       250       260       270      
pF1KB6 LFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED
        200       210       220       230       240         

>>CCDS13282.1 SLA2 gene_id:84174|Hs108|chr20              (261 aa)
 initn: 651 init1: 334 opt: 630  Z-score: 723.2  bits: 141.5 E(32554): 5.8e-34
Smith-Waterman score: 630; 42.8% identity (66.9% similar) in 257 aa overlap (6-248:9-259)

                  10               20         30        40         
pF1KB6    MGNSMKSTPAPA-------ERPLPNPEGLDSDFLAV-LSDYPSPDISPPIFRRGEKL
               :: :.:.       . :.   :.  :   :: :...:.   .   .: :: :
CCDS13 MGSLPSRRKSLPSPSLSSSVQGQGPVTM-EAERSKATAVALGSFPAGGPAELSLRLGEPL
               10        20         30        40        50         

      50        60        70        80        90       100         
pF1KB6 RVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDTKVGSFM
        ..:..: :: ..:  .:::  ::.. ::.: ::::.:::.:.:::::: :: .  :.:.
CCDS13 TIVSEDGDWWTVLSEVSGREYNIPSVHVAKVSHGWLYEGLSREKAEELLLLPGNPGGAFL
      60        70        80        90       100       110         

     110       120             130       140       150       160   
pF1KB6 IRESETKKGFYSLSVRHRQ------VKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEV
       ::::.:..: ::::::  .      ..::::  : :.: ::::::::  :. ::.::::.
CCDS13 IRESQTRRGSYSLSVRLSRPASWDRIRHYRIHCLDNGWLYISPRLTFPSLQALVDHYSEL
     120       130       140       150       160       170         

           170       180       190       200       210       220   
pF1KB6 ADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDES
       :: .::.:  ::. : ..    .    :::...  ..:.   .:. .   .:   : .::
CCDS13 ADDICCLLKEPCVLQRAGPLPGKDIPLPVTVQRTPLNWK---ELDSSLLFSEAATG-EES
     180       190       200       210          220       230      

           230       240       250       260       270      
pF1KB6 LFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED
       :.: :::::.. :.::..:  .:.:                            
CCDS13 LLSEGLRESLSFYISLNDE-AVSLDDA                          
         240       250        260                           

>>CCDS13283.1 SLA2 gene_id:84174|Hs108|chr20              (210 aa)
 initn: 495 init1: 334 opt: 472  Z-score: 544.8  bits: 108.2 E(32554): 5e-24
Smith-Waterman score: 472; 46.8% identity (68.4% similar) in 171 aa overlap (6-162:9-178)

                  10               20         30        40         
pF1KB6    MGNSMKSTPAPA-------ERPLPNPEGLDSDFLAV-LSDYPSPDISPPIFRRGEKL
               :: :.:.       . :. . :.  :   :: :...:.   .   .: :: :
CCDS13 MGSLPSRRKSLPSPSLSSSVQGQGPV-TMEAERSKATAVALGSFPAGGPAELSLRLGEPL
               10        20         30        40        50         

      50        60        70        80        90       100         
pF1KB6 RVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDTKVGSFM
        ..:..: :: ..:  .:::  ::.. ::.: ::::.:::.:.:::::: :: .  :.:.
CCDS13 TIVSEDGDWWTVLSEVSGREYNIPSVHVAKVSHGWLYEGLSREKAEELLLLPGNPGGAFL
      60        70        80        90       100       110         

     110       120             130       140       150       160   
pF1KB6 IRESETKKGFYSLSVRHRQ------VKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEV
       ::::.:..: ::::::  .      ..::::  : :.: ::::::::  :. ::.:::: 
CCDS13 IRESQTRRGSYSLSVRLSRPASWDRIRHYRIHCLDNGWLYISPRLTFPSLQALVDHYSEG
     120       130       140       150       160       170         

           170       180       190       200       210       220   
pF1KB6 ADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDES
                                                                   
CCDS13 WPAPWQGYTPTCDCAEDTTQLERAGQLPPVF                             
     180       190       200       210                             

>>CCDS54456.1 HCK gene_id:3055|Hs108|chr20                (504 aa)
 initn: 473 init1: 194 opt: 336  Z-score: 384.3  bits: 79.8 E(32554): 4.4e-15
Smith-Waterman score: 464; 43.1% identity (67.0% similar) in 188 aa overlap (9-183:40-227)

                                     10           20        30     
pF1KB6                       MGNSMKSTPAPAERPLPNP---EGLDSDFLAVLSDYPS
                                     :.:  .   .:   :: .. ....: :: .
CCDS54 QVGGNTFSKTETSASPHCPVYVPDPTSTIKPGPNSHNSNTPGIREGSEDIIVVALYDYEA
      10        20        30        40        50        60         

          40        50        60        70        80            90 
pF1KB6 PDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARV----YHGWLFEGLGR
              :..:... :. . : :::: ::.: .:.:::.  ::::     . :.:.:..:
CCDS54 IHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGISR
      70        80        90       100       110       120         

             100       110       120             130       140     
pF1KB6 DKAEELLQLPDTKVGSFMIRESETKKGFYSLSVRH---RQ---VKHYRIFRLPNNWYYIS
         ::. :  : . .::::::.::: :: ::::::    ::   ::::.:  : :. .:::
CCDS54 KDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYIS
     130       140       150       160       170       180         

         150       160       170       180       190       200     
pF1KB6 PRLTFQCLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVS
       :: ::. :..::.::..  ::::  :..::....   :                      
CCDS54 PRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGAG
     190       200       210       220       230       240         

         210       220       230       240       250       260     
pF1KB6 RLQEDPEGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKS
                                                                   
CCDS54 QFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYI
     250       260       270       280       290       300         

>>CCDS54455.1 HCK gene_id:3055|Hs108|chr20                (505 aa)
 initn: 461 init1: 194 opt: 336  Z-score: 384.3  bits: 79.8 E(32554): 4.4e-15
Smith-Waterman score: 458; 43.4% identity (66.7% similar) in 189 aa overlap (9-183:40-228)

                                     10           20         30    
pF1KB6                       MGNSMKSTPAPAERPLPNP---EGLDSDFLAV-LSDYP
                                     :.:  .   .:   :. . :...: : :: 
CCDS54 QVGGNTFSKTETSASPHCPVYVPDPTSTIKPGPNSHNSNTPGIREAGSEDIIVVALYDYE
      10        20        30        40        50        60         

           40        50        60        70        80            90
pF1KB6 SPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARV----YHGWLFEGLG
       .       :..:... :. . : :::: ::.: .:.:::.  ::::     . :.:.:..
CCDS54 AIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGIS
      70        80        90       100       110       120         

              100       110       120             130       140    
pF1KB6 RDKAEELLQLPDTKVGSFMIRESETKKGFYSLSVRH---RQ---VKHYRIFRLPNNWYYI
       :  ::. :  : . .::::::.::: :: ::::::    ::   ::::.:  : :. .::
CCDS54 RKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYI
     130       140       150       160       170       180         

          150       160       170       180       190       200    
pF1KB6 SPRLTFQCLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRV
       ::: ::. :..::.::..  ::::  :..::....   :                     
CCDS54 SPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGA
     190       200       210       220       230       240         

          210       220       230       240       250       260    
pF1KB6 SRLQEDPEGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRK
                                                                   
CCDS54 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIY
     250       260       270       280       290       300         

>>CCDS54453.1 HCK gene_id:3055|Hs108|chr20                (525 aa)
 initn: 473 init1: 194 opt: 336  Z-score: 384.0  bits: 79.8 E(32554): 4.5e-15
Smith-Waterman score: 464; 43.1% identity (67.0% similar) in 188 aa overlap (9-183:61-248)

                                     10           20        30     
pF1KB6                       MGNSMKSTPAPAERPLPNP---EGLDSDFLAVLSDYPS
                                     :.:  .   .:   :: .. ....: :: .
CCDS54 QVGGNTFSKTETSASPHCPVYVPDPTSTIKPGPNSHNSNTPGIREGSEDIIVVALYDYEA
               40        50        60        70        80        90

          40        50        60        70        80            90 
pF1KB6 PDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARV----YHGWLFEGLGR
              :..:... :. . : :::: ::.: .:.:::.  ::::     . :.:.:..:
CCDS54 IHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGISR
              100       110       120       130       140       150

             100       110       120             130       140     
pF1KB6 DKAEELLQLPDTKVGSFMIRESETKKGFYSLSVRH---RQ---VKHYRIFRLPNNWYYIS
         ::. :  : . .::::::.::: :: ::::::    ::   ::::.:  : :. .:::
CCDS54 KDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYIS
              160       170       180       190       200       210

         150       160       170       180       190       200     
pF1KB6 PRLTFQCLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVS
       :: ::. :..::.::..  ::::  :..::....   :                      
CCDS54 PRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGAG
              220       230       240       250       260       270

         210       220       230       240       250       260     
pF1KB6 RLQEDPEGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKS
                                                                   
CCDS54 QFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYI
              280       290       300       310       320       330




276 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:47:25 2016 done: Fri Nov  4 20:47:26 2016
 Total Scan time:  2.670 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com