GENSCAN 1.0	Date run:  5-Nov-116	Time: 01:13:20

Sequence gi568815596r:20102769_20324867 : 222099 bp : 45.94% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3410   3536  127  0  1   40  111    97 0.369   6.94
 1.02 Term +   3836   4295  460  2  1   31   42   145 0.867  -1.24
 1.03 PlyA +   4352   4357    6                               1.05

 2.00 Prom +   6562   6601   40                              -3.46
 2.01 Init +  10993  11127  135  0  0   73   93   119 0.738  11.36
 2.02 Intr +  11180  11288  109  1  1   64   70    52 0.984   0.86
 2.03 Intr +  15059  15379  321  0  0  -11   55   385 0.426  21.13
 2.04 Intr +  21990  22077   88  1  1   85   59    70 0.374   2.83
 2.05 Term +  28478  28601  124  2  1  107   44   141 0.987   9.46
 2.06 PlyA +  29332  29337    6                               1.05

 3.00 Prom +  29611  29650   40                              -9.65
 3.01 Init +  30362  30540  179  1  2  109  105    52 0.413   7.73
 3.02 Intr +  38602  38701  100  1  1   31   86    67 0.092   0.91
 3.03 Term +  38871  39041  171  2  0   88   53    74 0.539   1.73
 3.04 PlyA +  39589  39594    6                               1.05

 4.03 PlyA -  40163  40158    6                               1.05
 4.02 Term -  53071  52865  207  1  0   21   43   288 0.603  14.94
 4.01 Init -  53289  53098  192  0  0   85   50   180 0.875  12.92
 4.00 Prom -  58901  58862   40                              -4.36

 5.07 PlyA -  58966  58961    6                               1.05
 5.06 Term -  66165  65788  378  0  0   63   32   209 0.495   7.59
 5.05 Intr -  71878  71777  102  1  0   73   56    66 0.032   2.27
 5.04 Intr -  75266  75119  148  1  1   82   -6    92 0.010  -0.56
 5.03 Intr -  81829  81643  187  2  1   37  115    79 0.033   4.25
 5.02 Intr -  84515  84373  143  1  2   76   99    25 0.057   2.40
 5.01 Init -  93795  93719   77  0  2   36   57    92 0.043   1.48
 5.00 Prom -  96914  96875   40                              -7.06

 6.08 PlyA -  98056  98051    6                               1.05
 6.07 Term - 100167  99998  170  1  2   64   48   297 0.999  21.34
 6.06 Intr - 100454 100319  136  2  1  119  105   169 0.999  21.84
 6.05 Intr - 101523 101045  479  1  2  120  109   238 0.998  21.87
 6.04 Intr - 102656 102575   82  2  1   80   94    89 0.827   7.91
 6.03 Intr - 107867 107747  121  1  1   37   72    67 0.254   0.50
 6.02 Intr - 120940 120762  179  1  2   42   64   151 0.965   6.82
 6.01 Init - 122099 122034   66  2  0   93  117   237 0.999  26.17
 6.00 Prom - 134915 134876   40                              -2.76

 7.18 PlyA - 135023 135018    6                               1.05
 7.17 Term - 137760 137533  228  0  0    2   44   246 0.671   8.23
 7.16 Intr - 151246 151054  193  0  1   55   85   172 0.928  13.09
 7.15 Intr - 152216 152095  122  2  2   39   72    66 0.947  -0.61
 7.14 Intr - 152573 152448  126  2  0   92   75    26 0.841   2.58
 7.13 Intr - 153402 153265  138  0  0  112   55    94 0.998   9.16
 7.12 Intr - 155603 155475  129  2  0   59   91    45 0.427   2.79
 7.11 Intr - 158874 158788   87  0  0   91   -1   122 0.486   3.77
 7.10 Intr - 159868 159862    7  0  1   92   92     0 0.052  -5.46
 7.09 Intr - 160692 160425  268  1  1   57   82   106 0.057   3.49
 7.08 Intr - 180718 180575  144  2  0   37  119    43 0.207   2.55
 7.07 Intr - 188022 187884  139  0  1   62   74    74 0.333   3.44
 7.06 Intr - 191750 191608  143  0  2   -5   96    75 0.428  -0.93
 7.05 Intr - 194910 194785  126  1  0   60   92    62 0.415   4.45
 7.04 Intr - 205303 205210   94  1  1   68   95    51 0.868   3.34
 7.03 Intr - 205816 205546  271  0  1   69   98   184 0.719  15.04
 7.02 Intr - 208895 208726  170  2  2   50   60   170 0.941   9.14
 7.01 Intr - 215877 215769  109  2  1   68   99    31 0.290   2.49

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 125636 125430  207  2  0   82   38   146 0.970   6.34
S.002 Term - 148948 148817  132  1  0   61   32   124 0.823   2.19
S.003 Init + 164945 164972   28  1  1   76   86    14 0.820  -0.24


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:20102769_20324867|GENSCAN_predicted_peptide_1|195_aa
XVKLQTFTVSVRAHKGSKDPKSKQQQQELSQRAKHPQHGKTPTSPAGFISHWDSLLDFAA
PNPGTPAAHRELVPDNRGKEGKREREGDLLLWPTIPRRGNGGPRTGFSLPSSPAGAHLEP
AQARKHRVQPRLPPAPLPSSRPRLSLHTSPPAEGAVSGLGQPQRGAPTAQRRAEGLLQCG
QSGRRSRGSAKSEGC

>gi568815596r:20102769_20324867|GENSCAN_predicted_CDS_1|588_bp
ngagtgaagctacagaccttcacagtgagtgttagagctcataaaggcagcaaggaccca
aaaagtaagcagcagcagcaagagctctcccaaagagcaaagcacccacagcatggaaaa
acaccaacaagcccagccggcttcatctctcactgggactcgctgctggactttgcagca
ccaaaccccggcactccggcagcccacagggagctagtcccagacaatcgaggaaaagaa
gggaagcgagaaagagagggagacctgctattgtggccaacgatcccgcgaagaggcaac
ggcggtccacgaacgggattcagcctcccatcaagcccagccggcgctcacctggaaccc
gcgcaggcccgcaagcaccgtgttcagccccggctcccgcccgcgcctctcccttcctcc
cgcccgcgcctctccctccacacctccccgccagcagagggagccgtctccggcctcggc
cagccccaaagaggggcccccacagcgcagcggcgggctgaagggctcctccagtgcggc
cagagcggacgccgaagccgaggaagcgccaagagtgagggctgctag

>gi568815596r:20102769_20324867|GENSCAN_predicted_peptide_2|258_aa
MASVWQGCARGTDSPRAQDSGNQSGDENYQSGNARKMQTVLASPQSFPEQEIKLERIPGL
APGLIEPRTVYHFPLHQAEKKSTEEEPGGGGQEQLEEQEEPGGGGQEQLEEQEEPRGGGQ
EQLEEQEDPGGGGQEQLEEQEEPRGGGQEQLEEQEEPGGGGQEQLEEQGEPGGGGQEQLE
EQEEPGGGGAVFEPSIQEGQMALELLDEVSSGECQGGRPHTELRGLCEEDRNEGDEGVEF
EASKPHGGKLAFEKRGLA

>gi568815596r:20102769_20324867|GENSCAN_predicted_CDS_2|777_bp
atggccagtgtctggcagggttgcgccaggggcacagacagccccagggctcaggactct
gggaaccagagtggggacgagaactaccaatcagggaatgcccgcaagatgcagacagtt
ttggcatctcctcagagttttccagagcaggaaatcaagctggagagaatacctggcttg
gccccaggcctcattgaacccagaactgtctaccactttccattgcaccaagcagagaag
aagagcactgaggaggagcccggaggtggaggtcaggagcagctggaagagcaggaggag
cccggaggtggaggtcaggagcagctggaagagcaggaggagcccagaggtggaggtcag
gagcagctggaagagcaggaggatcccggaggtggaggtcaggagcagctggaagagcag
gaggagcccagaggtggaggtcaggagcagctggaggagcaggaggagcccggaggtgga
ggtcaggagcagctggaggagcagggggagcccggaggtggaggtcaggagcagctggag
gagcaggaggagcccggaggtggaggggctgtctttgagccatctattcaggaaggacaa
atggccttggagctcctggatgaagtctcctctggagagtgtcagggcgggaggcctcac
acggagctgcggggcctctgtgaggaagacagaaatgaaggcgatgagggtgttgagttt
gaggcatccaagccacacggagggaagctggcatttgagaagagagggctggcgtga

>gi568815596r:20102769_20324867|GENSCAN_predicted_peptide_3|149_aa
MERRQGAVRRRVVQEDSTAQDREGSWSPRGWHNASKRYIEGCRSVTATGQSFQPEDRRLR
MATPNKGLWLSRAQNLNTSRPEPRDDALAPAPWAQLTTADITFSSTPFPANPDEPSLSSD
PLSSSESRMLEPKAISGNIWSSLTYSWGN

>gi568815596r:20102769_20324867|GENSCAN_predicted_CDS_3|450_bp
atggagaggaggcaaggagcagtccgtaggagggtagtgcaggaggacagcactgcacaa
gacagggagggcagctggtccccgagggggtggcacaatgccagcaagaggtacatcgag
ggctgtcgcagcgtcactgccaccggacagtctttccaacctgaggacaggaggctccgg
atggccactcccaacaagggcctatggctctccagagcccagaacctgaacacatccagg
ccagagccacgggatgatgcactggcccctgccccatgggcccagctcaccacggctgac
atcaccttcagctccacccctttcccagcaaaccctgatgagccctctctttcctctgac
ccattgtcctcctcggaatcaagaatgctagagccaaaagctatctcagggaacatctgg
agcagcctcacttacagctggggaaactga

>gi568815596r:20102769_20324867|GENSCAN_predicted_peptide_4|132_aa
MLSKGPLQYAQVFGCKKRATAVAPGKHSNGLIKVNGWHLEMIELHMLQYKLLEPLLLWAK
SDLLGGSHVAQICAVHQSISKALVAYYQKYMDEASKKDIKDTLIQNDQTLLVAGLLRCES
KKFGSSGACARY

>gi568815596r:20102769_20324867|GENSCAN_predicted_CDS_4|399_bp
atgctgtccaagggcccactgcagtatgcgcaggtctttggatgcaagaaaagggccaca
gctgtggcgcccggcaaacacagcaatggcctcatcaaggtgaatgggtggcacctggag
atgatcgagctgcatatgctacaatacaagctgctggaaccacttctgctctgggcaaag
agcgatttgctgggtggtagtcatgtggcccagatttgtgctgtccatcagtccatctcc
aaagccctggtggcctattaccagaaatatatggatgaggcttccaagaaggatatcaaa
gacaccctcatccagaatgaccagaccttgctggtagctggcctccttcgctgtgagtcc
aaaaagtttggaagctctggtgcctgtgctcgctactag

>gi568815596r:20102769_20324867|GENSCAN_predicted_peptide_5|344_aa
MCQAQCQALDIASDPGPVLTFKAVARASPLEKECRAAGQQAQGPAWYLGCFPSLLGPQIS
SSGNQVQKGAKCTEGSSELLPQNLLGGLWLTTSKEEASGSGCSQQEGLLMSPTLLKAPGK
LDLKKGLGNPVLSPSSLSSSKQALRISSEKLTSPELLVAENEASCVALPATLTFQGQSSC
PYVRSLVAASPKESGDCHHSLMLRDVAAWGMALCKLEALGQIPAHQPGEAPIPCPITADW
LRPLPGWSYSADCTFYPLMTSPTRKFAQVQNSEPHEEAAEEKDDSSGALRPSGSNPSCPV
PTLQPEFPIRHRALQQEDLPARASGPGRSICLPLAWMSARADAI

>gi568815596r:20102769_20324867|GENSCAN_predicted_CDS_5|1035_bp
atgtgccaggcacagtgccaggccctggacattgccagtgacccaggccccgtccttacc
ttcaaggctgttgcgagggcaagccctctggagaaggagtgcagagctgcaggccagcag
gcccagggtcccgcctggtatcttgggtgctttccttccctcctggggcctcagatctcc
tcatctggaaatcaagttcagaaaggtgcaaaatgtactgagggctcttctgagttgctg
ccgcagaacctgcttggtggcctgtggctcacgacgtcaaaggaggaggcatcgggaagt
ggatgttcccagcaagagggtcttctgatgtcccccaccctcctcaaagcaccagggaaa
ttggatcttaaaaagggccttgggaacccagtgctgagcccttcaagcctctcctcatcc
aaacaggctctcagaatatcctctgagaaactcacttctcctgagctgttggtggctgaa
aatgaggcctcctgtgtggccctcccagccactctcaccttccagggacagtcctcctgt
ccctacgtgcgcagcctggtagctgcatcacccaaggaatctggtgactgccaccactct
ctgatgctcagagatgttgctgcatggggcatggccctgtgcaagctggaggcactgggc
cagatccctgcccaccaaccgggcgaggctccgatcccctgccccatcacagctgactgg
ctgaggcccctccctggctggtcctacagcgctgactgcacgttctacccactcatgact
tctcccacaaggaagtttgcccaggtgcagaactcagagccacatgaagaggctgcagaa
gaaaaggacgactcgtctggggctcttagaccctcaggaagcaacccaagctgccctgtg
cccacactccagcctgaatttcctatcagacacagagctttacagcaggaagacctgccc
gccagagcctcggggcccggccgctccatctgcctgcccttggcctggatgtctgcccga
gcagatgcaatttaa

>gi568815596r:20102769_20324867|GENSCAN_predicted_peptide_6|410_aa
MRRAALWLWLCALALSLQPALPPRNAGLDGGWDLGRSQVSARAARCPSLPPEFASPAPAP
GAGVPGSLLRAGSAIPRDAEGRSRGFRGHTGQVQLTDQLPFPAPPRMTANQRPPALPKLV
PGQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTQLLTAIPTSPEP
TGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQEATPRPRETTQLPTTHLASTT
TATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQL
PAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGASQGLLDRKEVLGGVIAGG
LVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA

>gi568815596r:20102769_20324867|GENSCAN_predicted_CDS_6|1233_bp
atgaggcgcgcggcgctctggctctggctgtgcgcgctggcgctgagcctgcagccggcc
ctgccgccccgtaacgccggccttgacgggggctgggacctgggccgcagccaggtgtca
gcgcgggccgcccggtgcccgagtctgccgcccgagttcgcctccccagcccccgcgccc
ggtgctggcgtcccggggtccctcctgcgggccggctcggccatccccagggatgcagag
gggagaagccggggatttcgtggccacacggggcaggtacagctgacagatcagcttccc
tttcctgctccaccacgaatgactgcgaatcagaggccccctgcgctgcccaagttagtg
cctgggcaaattgtggctactaatttgccccctgaagatcaagatggctctggggatgac
tctgacaacttctccggctcaggtgcaggtgctttgcaagatatcaccttgtcacagcag
accccctccacttggaaggacacgcagctcctgacggctattcccacgtctccagaaccc
accggcctggaggctacagctgcctccacctccaccctgccggctggagaggggcccaag
gagggagaggctgtagtcctgccagaagtggagcctggcctcaccgcccgggagcaggag
gccaccccccgacccagggagaccacacagctcccgaccactcatctggcctcaacgacc
acagccaccacggcccaggagcccgccacctcccacccccacagggacatgcagcctggc
caccatgagacctcaacccctgcaggacccagccaagctgaccttcacactccccacaca
gaggatggaggtccttctgccaccgagagggctgctgaggatggagcctccagtcagctc
ccagcagcagagggctctggggagcaggacttcacctttgaaacctcgggggagaatacg
gctgtagtggccgtggagcctgaccgccggaaccagtccccagtggatcagggggccacg
ggggcctcacagggcctcctggacaggaaagaggtgctgggaggggtcattgccggaggc
ctcgtggggctcatctttgctgtgtgcctggtgggtttcatgctgtaccgcatgaagaag
aaggacgaaggcagctactccttggaggagccgaaacaagccaacggcggggcctaccag
aagcccaccaaacaggaggaattctatgcctga

>gi568815596r:20102769_20324867|GENSCAN_predicted_peptide_7|831_aa
XFCLPKSFGNLMIQQKMDKKAYFLGMMNGERLHGELLGTRDAETDGPEKGDQKGKASPFE
EDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEG
LGPLPNPTANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYN
SQQQLFQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPP
GTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQ
PGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTA
YYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAGGLTNGSGRYISAAPGAEAKY
RSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVE
FSQDQHGSSFKEIFSSNTYGAVLSYDNSAFSGIPSEIYLRFGSLDQKLALATRIRGHVLP
LALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ
FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQ
HVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDG
PHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKQPPPPNNGFKKKDKGGIHLTATCP
QSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIYVK

>gi568815596r:20102769_20324867|GENSCAN_predicted_CDS_7|2496_bp
nncttttgcctaccaaaaagttttgggaacctgatgattcaacaaaagatggacaaaaag
gcatatttcttggggatgatgaatggagagagactgcatggggagcttctcggcactaga
gatgctgaaacagatggacctgagaaaggagatcaaaaaggcaaggcttctccatttgag
gaggaccaaaacagagatcttaaacaaggagatgatgatgattctaaaataaatggcaga
ggtttgccaaatggaatggatgccgattgcaaagattttaatcgtactcctggaagtcgt
caagcctctccaactgaagtagttgagcgcttgggccccaatactaatccctcagaagga
ctggggcctcttcctaatcctacagctaataaaccacttgttgaagaattttcaaatcct
gaaactcagaatctggatgccatggaacaagttggtctggaatccttacagtttgactat
cctggtaatcaggtaccaatggactcttcaggagctactgtaggcctttttgactacaat
tcccagcagcagctctttcagaggactaatgcactaacagttcaacagttaactgcagct
caacagcagcaatatgcattagcagcagctcagcagccacatatagctggtgtattctca
gcaggccttgctccagctgcatttgtgccaaatccatacattattagtgctgctcctcca
gggaccgatccgtatactgcagcaggattggctgcagcagctacattagcaggtccagca
gtggttccacctcagtattacggcgttccatggggggtgtatccagccaacttatttcag
cagcaagctgcagctgcggcaaataacacagccagtcagcaagcagcatcacaagctcag
cctggacagcaacaggttctccgtgctggagcaggtcagcgtcctcttactcccaatcag
ggtcagcaagggcagcaagcagaatcacttgcggcagctgcagcagcaaatccaacattg
gcttttggtcagggtcttgctactggcatgccaggctatcaagtactagctccaactgcc
tattatgatcagactggtgccttagtggttggccctggagcaaggactggccttggagct
ccagttcggttaatggctccaacacctgttttaattagttcagcagcagcacaagctgga
ggactgacaaatggtagtggtcgatatatctctgcagcacctggagcagaagcaaaatat
cgaagtgcttcaagcacttccagtctatttagctccagcagccagctctttcctccttcc
cggcttcggtataataggtctgatattatgccttctggccgcagtagattattggaagat
ttcagaaacaaccgcttcccaaaccttcagcttagagacttgattggacatatagttgag
ttttctcaagaccagcatggttctagctttaaggagatctttagcagcaacacctatgga
gctgtcctctcctatgataacagtgctttttctggaataccttctgaaatctacctgagg
tttgggagtctggatcaaaaattagccctggctactcgtattcgtggtcatgttctaccc
ttagccttgcagatgtatggctgccgcgttattcagaaagcattagaatctatttcttct
gaccagcagagtgaaatggtaaaggagctggatggtcatgtgctcaaatgtgtgaaagat
cagaatggaaaccatgttgtacaaaaatgtatcgaatgtgttcagccacagtcactacag
ttcatcattgatgctttcaagggacaagtatttgtgctttcaactcatccttatggctgc
agagtaattcagcgcatcctagagcattgcactgcagaacagaccttacctatcttagaa
gaactccaccaacatacagagcagttggtacaggatcagtatggcaattatgttattcag
catgtactggaacacggtcgacctgaagacaagagcaaaattgtttccgaaatcagggga
aaggttttagccctgagtcaacacaaatttgccagcaatgtagtagaaaagtgtgttact
catgcctcccgtgctgagagagctttactgattgacgaggtttgctgccagaatgatggt
cctcacagtgccttatacaccatgatgaaggaccagtatgccaattacgtggttcaaaag
atgattgatatggctgaacctgctcagagaaagataatcatgcacaagcaaccaccgccc
cccaacaatggctttaagaagaaggacaagggaggcattcatctcacagccacttgccca
cagagtgagctggatgctgaaactgtgaagagcattctggctgaatacaagattcataat
gccgatgtgactctacgtagtgatgctacagctgatgacctcattgatgtggtggaagga
aacagagtttatatcccctgtatctatgttaaataa