GENSCAN 1.0	Date run:  4-Nov-116	Time: 06:28:39

Sequence gi568815592r:130044523_130315273 : 270751 bp : 38.71% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4760   4871  112  1  1   67  116   123 0.995  12.03
 1.02 Intr +   6727   6886  160  2  1   90   47   123 0.994   6.52
 1.03 Intr +   8337   8469  133  0  1    8  101   269 0.992  19.93
 1.04 Intr +  10163  10249   87  1  0   62   55    76 0.658   0.95
 1.05 Intr +  10649  10733   85  1  1  102   84    61 0.995   5.57
 1.06 Intr +  12695  12811  117  0  0   98   67    29 0.682   1.32
 1.07 Intr +  12884  12975   92  0  2  106   80    83 0.835   8.09
 1.08 Intr +  15514  15618  105  0  0   73   99    81 0.811   7.19
 1.09 Intr +  17129  17235  107  1  2   16   69    96 0.085  -1.41
 1.10 Intr +  21372  21489  118  0  1   52   58    85 0.246   1.45
 1.11 Intr +  21831  21966  136  2  1  102    6   144 0.767   6.82
 1.12 Intr +  23808  23899   92  1  2   63   92   113 0.999   7.99
 1.13 Intr +  26454  26605  152  2  2   78   77   162 0.895  12.14
 1.14 Intr +  34036  34112   77  1  2   88   89    74 0.970   5.74
 1.15 Intr +  39098  39183   86  0  2   81   83    41 0.981   1.52
 1.16 Intr +  41618  41728  111  1  0   80  106   100 0.979  10.66
 1.17 Intr +  54178  54256   79  0  1   73   61    54 0.123  -0.59
 1.18 Intr +  56879  57040  162  0  0   19   71   133 0.085   3.73
 1.19 Intr +  59927  60053  127  0  1   58   89    62 0.064   2.12
 1.20 Intr +  68149  68264  116  1  2   63   59   104 0.011   4.17
 1.21 Intr +  76359  76436   78  1  0   25   53   118 0.037   0.60
 1.22 Intr +  88930  89171  242  2  2   56   44   209 0.564   9.65
 1.23 Intr +  92764  92835   72  0  0  102   80    34 0.829   2.68
 1.24 Intr +  93138  93290  153  2  0   49   52    98 0.538   1.65
 1.25 Term +  95088  95231  144  2  0   82   49    72 0.636  -0.37
 1.26 PlyA +  95943  95948    6                               1.05

 2.09 PlyA -  96586  96581    6                               1.05
 2.08 Term - 100282  99998  285  1  0   89   38   159 0.948   5.42
 2.07 Intr - 110503 110303  201  1  0   46   70   168 0.513   9.36
 2.06 Intr - 124185 124099   87  0  0   51   87    69 0.302   2.35
 2.05 Intr - 128684 128488  197  0  2  -39    7   209 0.070  -1.69
 2.04 Intr - 128986 128809  178  1  1   48   71    95 0.892   2.37
 2.03 Intr - 131486 131319  168  2  0   78   69   185 0.990  14.82
 2.02 Intr - 139665 139581   85  2  1   62   88   124 0.968   8.70
 2.01 Init - 139977 139916   62  0  2   74   74    43 0.265   2.27
 2.00 Prom - 140222 140183   40                              -9.15

 3.00 Prom + 140751 140790   40                              -4.35
 3.01 Init + 143715 143792   78  2  0   94   50    89 0.133   6.81
 3.02 Intr + 149486 149663  178  1  1  125   75    12 0.422   2.17
 3.03 Term + 150922 151301  380  2  2   62   39   224 0.398   8.87
 3.04 PlyA + 153638 153643    6                               1.05

 4.07 PlyA - 153864 153859    6                               1.05
 4.06 Term - 159231 159121  111  0  0  109   47    67 0.074   2.28
 4.05 Intr - 163836 163605  232  2  1   41   86    89 0.039   0.85
 4.04 Intr - 165086 164973  114  1  0   78   59    57 0.026   0.44
 4.03 Intr - 170004 169815  190  1  1   59   70   213 0.092  14.32
 4.02 Intr - 170772 170673  100  0  1   79  113    43 0.558   4.66
 4.01 Init - 173915 173730  186  2  0   -1   37   192 0.709   4.30
 4.00 Prom - 176852 176813   40                              -8.45

 5.03 PlyA - 177112 177107    6                               1.05
 5.02 Term - 179708 179486  223  1  1   -3   41   251 0.490   6.71
 5.01 Init - 187686 187613   74  0  2  120   48    44 0.767   4.19
 5.00 Prom - 193109 193070   40                              -5.15

 6.00 Prom + 193834 193873   40                              -5.45
 6.01 Init + 198616 198684   69  0  0   69   99     0 0.225   0.30
 6.02 Intr + 204091 204226  136  0  1  100   37   130 0.261   8.32
 6.03 Intr + 212660 212760  101  0  2   96   25    66 0.031   0.01
 6.04 Intr + 221564 221617   54  1  0   85   38   100 0.012   2.96
 6.05 Intr + 231540 231667  128  2  2   42   78    99 0.164   2.86
 6.06 Intr + 251691 251853  163  0  1   34   73   119 0.250   4.06
 6.07 Term + 252434 252574  141  1  0   51   42    94 0.427  -1.95
 6.08 PlyA + 252855 252860    6                               1.05

 7.03 PlyA - 255756 255751    6                               1.05
 7.02 Term - 266938 266822  117  1  0   80   32    98 0.335   0.96
 7.01 Init - 267208 267023  186  1  0   97   66    81 0.703   5.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 162994 163284  291  0  0   18   54   271 0.853  11.06
S.002 Term - 170004 169811  194  1  2   59   48   234 0.907  13.10
S.003 Term + 221564 221635   72  1  0   85   55   135 0.923   6.83


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:130044523_130315273|GENSCAN_predicted_peptide_1|980_aa
FRVNEFGALEVITDENEMENVKKATATTTWMVPTAQEVFSEKTGMPFRLKDPVKVEGLQF
CENCCQYGNVDECLSGGNYCSQNCARHIKDKDQKEERDVEEDNEEEDPKCSRKKKPKLSL
KADTKEDGEERDDEMVKIPSRHLSTATWSKEEEAEGVDWEYLAYENKQDVRILRGSQRAR
RKRRGDSAVLKQGANHSSLFILVLGKTSQEERQRYQSWKSEKSQAAYQSGTCLPPKGKKA
WCWASYLEEEKAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEFLL
DPFELEEEGQSFLVDDLCLSFEVDDIAQQERKAFGGEKKLDFCAYAPAVVCSLQCRADCP
LWGHARAECAVLVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYK
EEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFICVATVTDM
VDNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEE
TNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKMRRQRIEMLK
EAPEIVHWRNQNSTQAFKVMLGLTPPTREPQGTEASLSQAFGSFIVGRNPTPTNQMLPSG
LSILRNEVKAEINLNKDRIFPDRLSGEMPPASPSFPRNKRTDANESSSSPEIRIQGILIG
KLCPILRRSHPESTWYAECLDLFSYRDLSNGYQHADDVKEDFEERTESEMRTSHEARGAR
EEPTVQQAQRRSAVFLSFKSPIPCLPLRWEQQSKLLPTVAGIPASKVSKWSTDEVYFIFF
AARHQIQDYWLKRCGTLSAISKTPNVWNNGIVYALQKLTEKKFQKETCCLRQAFSRAKVV
INQSAFVVGSLGMSVDIFINDLEDFYKAVHCTKQIDGEAFLLMTQTDIVKIMSIKLGPAL
KIFNSILMFKAAEKNSHNEL

>gi568815592r:130044523_130315273|GENSCAN_predicted_CDS_1|2943_bp
tttcgggtaaatgagtttggagccctggaagttattacagatgagaatgagatggaaaat
gttaaaaaagcaactgctaccaccacttggatggtaccaactgctcaagaagtcttttca
gagaagactgggatgcctttcaggttgaaggatccagtgaaagtagaagggcttcagttc
tgtgagaactgttgtcagtatggcaacgtagatgagtgtctttctggaggaaactattgc
agccagaattgtgctcggcacatcaaagataaagatcagaaggaagaaagggacgtagaa
gaagacaatgaggaagaagatcctaagtgtagtcggaagaaaaaaccaaaattatctctg
aaagctgacaccaaggaggatggagaagagagagatgatgaaatggtgaagatcccaagt
aggcatttgtctacagccacatggagtaaggaagaggaagctgagggtgtggattgggag
tatctggcctatgagaacaaacaagatgtaagaatcctgaggggttcgcagagagcacgg
aggaaaagacgaggggattcggctgtactaaagcagggtgcaaaccacagttcacttttt
atcttggttcttgggaagacgagccaggaagagagacagagataccagtcctggaagtca
gagaagagccaggcagcgtatcagtcagggacgtgtttgcctcctaaaggaaagaaagcg
tggtgctgggcatcctacctggaagaggagaaagcggtggcagtgccggcgaagctgttc
aaggagcatcaatcctttccatataacaaaaatggattcaaagttggcatgaaattagaa
ggcgtggatcctgagcatcagtctgtgtactgtgtcctcaccgtcgcggagtttttgtta
gacccttttgagttggaagaggagggtcagagtttcttggtggatgatttgtgtttgtcc
tttgaagtggatgatattgcccagcaagagcgcaaggcctttggtggagaaaaaaagctt
gacttctgtgcatatgcaccagctgtggtctgcagccttcagtgcagggcagactgtcca
ctctggggccatgctagagctgagtgtgctgtgctggtttgtggataccggataaagctt
cactttgatgggtattctgattgctatgacttctgggtgaatgcagacgctctggatatc
cacccagttgggtggtgtgagaaaaccggccacaaactccatcctccaaaagggtataaa
gaagaagaattcaattggcagacctatcttaagacatgtaaagctcaagctgctcctaag
tcattatttgaaaatcagaatataacagtgatcccatcgggctttcgagttggtatgaag
cttgaggcagtagacaaaaagaatccctcattcatctgtgttgctacggtaacagatatg
gtggacaatcgtttcctggtacattttgacaactgggatgagagctatgactattggtgt
gaagcatcaagtccacatattcatccagttggttggtgtaaggaacatagaagaaccctt
attactccaccaggttatccaaatgtgaaacatttttcttgggataaatacttagaagaa
accaattctttacctgctcctgcaagagctttcaaagtgaaacctcctcatggattccag
aaaaaaatgaagcttgaggttgtagacaaaaggaaccctatgtttattagagtagcaact
gtggcagacacagatgatcaccgggtaaaaatgaggagacagagaattgaaatgcttaag
gaagcacctgagattgtacattggcggaatcagaattcaacccaggctttcaaggtgatg
ttaggtctgacacctcctactagggagccacaagggaccgaggcttccctttctcaggcc
tttggcagtttcattgtgggcaggaatcccacacccaccaatcagatgctgccatccggg
ctttccatcttgaggaatgaggtgaaggcagaaatcaatttgaataaagaccgtattttt
ccagaccgcttaagtggtgagatgcctccggctagtccgtcatttccaagaaataaaagg
acagatgcaaatgaaagctcttcttcccctgaaatcaggattcagggcatcctcatcggg
aagctctgccccatattaagacggtcccaccctgaatccacctggtatgccgaatgcttg
gatctcttttcctacagagacttgtcaaatgggtaccagcatgctgatgatgtcaaagaa
gactttgaagagagaacagaaagtgaaatgagaacatcacatgaagccagaggtgcccgg
gaagaacccaccgtccagcaggcacagcgtcggtcagctgtctttctgtcctttaagtcc
ccaattccatgtctgcccttgcgctgggagcagcaaagcaaacttcttccaactgtcgca
ggaatccctgccagtaaagtttccaaatggagcacagacgaggtatattttattttcttt
gctgcccgacaccagatacaggattactggcttaagaggtgtggaacattgagcgccatt
agcaagacacctaatgtctggaataatggcattgtatatgcattgcagaagctaaccgaa
aaaaaatttcagaaggagacttgctgtctgcgccaggccttcagtagggccaaggttgta
ataaaccagtcagcctttgtagtgggctccttgggaatgtcagttgacattttcattaat
gacttagaagacttctataaggctgtccattgtactaagcaaattgatggagaagcattt
ctacttatgactcaaacagacattgttaaaattatgagcattaaactgggccctgctctc
aaaattttcaattccatcctgatgttcaaagctgcagagaagaattctcacaatgaactt
tga

>gi568815592r:130044523_130315273|GENSCAN_predicted_peptide_2|420_aa
MRIRIIEFLQADMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGFFLWKRALKDRF
KYVRRPIEDDEQVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKPQLVIPRRIASGVDL
QQTVADLQKRDLLEEKLTNKKQHHQCQHKGLPHKNPIQRSSKIKENEIDDGFRRWVITNS
SELKEHVLTQSKEAKNLDKRLQELLTRITSLERNINDLMELKNTGRELRQKKIISYAAEI
ENVDAGKTQESGHSLKGKKEEAVCFDSELDEHIKWFQQEYVKTEKDWREIDKRMSQTLEI
RRKMIGSRTPLKDILKLFPFLKCPYQVQVSTPVLEVKNPFNMEVCEFSLYLERERLTKVD
DCVTALAALVAAFHVFRIECPRRLSQTFNFLETLIFDMHSPYFPSLKEKENEVGFQHPLT

>gi568815592r:130044523_130315273|GENSCAN_predicted_CDS_2|1263_bp
atgaggataaggatcattgagtttctccaggccgacatgactaagtatctggaaggctca
ctgtaccccagcacccagcagtacaatgacgtggttaatgccctgctgcaggcccaccct
ttcctggatgaggatggctgtggcttctttttatggaaacgagccctcaaagatcgcttt
aaatatgttcgaagacccatagaagatgatgagcaagtgattagaaataagtgtaaattt
ggacaccgaagaggccagacaaggaaatctcttgctgatataagatttgatgaaattaaa
cttgtccagataaaacctcaactggtaatacccagacgaatagcatctggagtggacctc
cagcaaactgtagcagacctgcagaagagggatctgttagaagaaaaactaacaaacaaa
aagcaacatcatcaatgtcaacataaaggactcccacacaaaaatcccatccaaaggtca
tcaaagatcaaagaaaatgagattgatgacggcttcagaaggtgggtaataacaaactcc
tctgagctaaaggagcatgttctaacccaaagcaaggaagctaagaaccttgataaaagg
ttacaggaactgttaactagaataaccagtttagagaggaacataaatgacctgatggag
ctgaaaaacacaggacgagaacttcgtcaaaaaaaaattatttcctatgctgcagagatc
gaaaatgttgatgcaggcaagacacaggagtctggccattcactcaaaggcaagaaagaa
gaagctgtttgttttgattctgagctagatgaacatattaagtggttccagcaagaatac
gtgaaaacagaaaaggactggagagaaattgacaagagaatgagccaaactttggaaata
agaagaaagatgattggcagccgaacacctctgaaggacattcttaaactgtttcctttc
ttgaagtgcccttatcaggtgcaagtgtccacacctgtgttggaagttaaaaaccctttc
aacatggaggtctgcgaattttctttatatttagaaagggagaggctcacaaaggtggac
gactgtgttacagccttggctgcgctagtagctgcctttcatgtatttaggattgagtgt
ccaagaagactgtcccaaactttcaacttcctagaaacgctgattttcgatatgcacagt
ccttattttccttctttgaaagaaaaggaaaacgaagtaggatttcagcacccactcact
taa

>gi568815592r:130044523_130315273|GENSCAN_predicted_peptide_3|211_aa
MALLRTGSGEHQLSKEQSESTEEQQLAASRQVELGPNSSSASAPPLYNLFITTPPHTQSG
LQFHSATSPPPPAQQFPLKKVAGAKEQDKPYKLVQDLRLINQIVLPIHPMVPNPYTLLSS
IPPSTTHYSVLDLKHAFFTIPLHPSSQPLFAFTWTDPDTHQAQQITWAVLLQGFTDIPHY
FSQAQISSSSVTCLSVILIKTHVLSLPIMSD

>gi568815592r:130044523_130315273|GENSCAN_predicted_CDS_3|636_bp
atggctctgttaagaacgggctcaggtgagcaccagctctctaaggaacaatctgaaagc
acagaagaacagcagttggctgcttctcgccaggtcgagctaggtcccaattcttcctca
gcctccgctcctccactctataatctttttatcaccacccctcctcacacccagtctggc
ttacagtttcattctgcgactagccctcccccacctgcccagcaatttcctcttaaaaag
gtggctggagctaaagaacaagacaagccttacaagttagttcaggatctgcgccttatc
aaccaaattgttttgcctatccaccccatggtgccgaacccatatactctcctatcctca
atacctccctctacaacccattattctgttctagatctcaaacatgctttctttactatt
cctttgcacccttcatcccagcctctcttcgctttcacttggactgaccctgacacccat
caggctcagcaaattacctgggctgtactgctgcaaggcttcacagacatccctcattac
ttcagtcaagctcaaatttcttcctcatctgttacctgtctcagcgtaattcttataaaa
acacacgtgctctccctgccgatcatgtctgactga

>gi568815592r:130044523_130315273|GENSCAN_predicted_peptide_4|310_aa
MRCYVPLEHHAAIETPEYKQVPGEPPTACALREWGGATEVHTVCSEEELALLILVWELGI
QSVYLQETAMETWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIG
HQAVLMDLIKKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYP
AENLDNGLIDQRVLKQSISRPSHPGNPCIHNSYYILSPVTNKQMQCLKRSSLKRETVTLH
TKNNRVIAKQGCGPSVFTTPLHYQLILPTEQYCKAKSSGLGKYETNQSYSSVQSLTQVIN
NVHCMKEQMY

>gi568815592r:130044523_130315273|GENSCAN_predicted_CDS_4|933_bp
atgagatgttatgttccattggaacaccatgctgctattgagacacctgagtataaacag
gtccccggagagcctccgacagcctgcgcactgagagaatggggtggagccacggaagtt
cacacggtttgcagcgaggaggaactggcccttcttattctggtgtgggaacttggaatt
caatctgtgtatttacaggagacagcaatggaaacctggtcagttgagcaggtctgcagt
tggttggtggagaaaaatttaggagagctagttcatagatttcaagaggaagaagtaagt
ggggccgctcttcttgcacttaatgatcggatggttcagcaactggtaaagaaaattggg
caccaggctgttctgatggatttaattaaaaaatacaagcagaacactcaaggactgaag
tccccagaaaaccccaaaaaggcagccctggtcatgcaaacagaagcagctcgagattac
agggatgaagagtcctccagtccagccaggcatggggagcagatgccatctttctatcca
gctgaaaaccttgataatggactaattgaccaaagagtattgaaacagagcatttcacgg
ccgtcccacccaggcaatccgtgcatccataactcatattacatattgtctccagtcact
aacaagcaaatgcaatgccttaaacgtagttcattgaaaagagagactgtcaccttgcac
acaaagaataatcgggtaatagccaagcaaggatgtggtccttcagttttcacaacccct
ttacactatcagctcattttgcccacagagcagtactgcaaggccaagagctctgggttg
gggaagtatgagacgaaccagtcttattcatctgtgcagtccctgacacaggtgatcaac
aatgttcattgcatgaaggaacagatgtattaa

>gi568815592r:130044523_130315273|GENSCAN_predicted_peptide_5|98_aa
MASSCNGIPQTVDKKAFPTLYWLGLHKRLDIKRNTLAEYTDRLAGHQQQYDVDHVEFAWG
WLEESQATERPDSRGRPPSHSIPLVDPIHLLRATSTSQ

>gi568815592r:130044523_130315273|GENSCAN_predicted_CDS_5|297_bp
atggcctctagttgcaatggaattccccagacagtggacaaaaaggcctttcctacactg
tattggctaggcctacacaagcggctggacatcaagaggaacacactggcagaatacact
gacagactggcaggacatcaacagcagtatgatgtggaccacgtagaatttgcctggggg
tggttggaggagagtcaggccactgagcggcctgactccaggggaagaccgccttcccat
tccattccccttgtggatcccatccatctgctgagagctacttccaccagtcaataa

>gi568815592r:130044523_130315273|GENSCAN_predicted_peptide_6|263_aa
MTQRGQVLVNYVSTGISNYFSVLVLARPQEKEKSKEDAPSMAVSGTGGISADRNHGQNSA
VIRQALLEGQRNKGAICKTERRPSSETELASTLILDFPAFRVKKGERVTLEIDGAEMDLQ
GPYNRETGGSERRQKQELELRTLKIEGGAINQRKYVAFRREKKKIKVTGEWTSSEWKAER
REPGSVGVPMGRSWGTKKESSKSLVKVNPGNSESMERCTPTQSLPTTHPSGQVLPLIISP
PDDKPAFTLKHHLLDCSLNCITK

>gi568815592r:130044523_130315273|GENSCAN_predicted_CDS_6|792_bp
atgacccaacggggacaagtgcttgtcaattatgtctctactggaatctctaactacttt
tctgtcctggtccttgcaaggcctcaggagaaagaaaaaagcaaggaagacgctccaagc
atggcagtatctggcactgggggaattagtgctgaccgaaaccatgggcagaactctgca
gtaataaggcaggctctccttgagggacagaggaataagggagccatctgcaagacagaa
agaaggccctcatcagaaactgaattggccagcaccttgatcttggacttcccagccttc
agagttaaaaaaggggaacgtgtaaccctagaaattgatggagctgaaatggatcttcaa
ggtccttataacagggaaacaggaggttcagagagaagacagaaacaggagttggaatta
cgtactttgaaaatagaaggaggggccataaaccaaagaaagtatgtggcctttagaaga
gagaaaaaaaagatcaaagttactggtgaatggacaagttctgaatggaaagctgagaga
agagaaccaggatctgttggagtgcctatgggaaggagctggggtacaaaaaaggaaagc
agcaagagtctggtaaaggtcaacccaggaaactcagagtccatggaaaggtgcacccca
acacaatctcttcctaccacccatccttcagggcaggtgcttccactcatcatcagtcca
cctgacgacaagccagcttttacacttaagcaccatctattggattgcagcctgaactgc
atcaccaaataa

>gi568815592r:130044523_130315273|GENSCAN_predicted_peptide_7|100_aa
MAVIWSQKTLISFALVNVDRGDHLSAATSTLLHWPLKLVQLLGLKESSSLADVFTNFFST
LQKTSEYCSMGTQNHESVCNSDQGAVGWRNPSLPVPSGGQ

>gi568815592r:130044523_130315273|GENSCAN_predicted_CDS_7|303_bp
atggctgtcatctggtcccagaagactcttatatcctttgccctggtaaatgtggacaga
ggagaccatctcagcgcagccacctccactctgctgcactggcctcttaaacttgttcaa
ctactgggcctaaaagaaagcagtagtctggcagatgtcttcacaaattttttttcaaca
cttcagaaaacttcggaatactgctctatgggcacacagaaccatgagagtgtctgcaac
agcgaccagggagcagtaggctggaggaacccctccttgcctgtgccttcaggagggcaa
taa