GENSCAN 1.0	Date run:  5-Nov-116	Time: 00:35:01

Sequence gi568815597r:153434699_153635339 : 200641 bp : 48.29% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -   1608   1603    6                               1.05
 1.02 Term -   1850   1728  123  2  0   39   37   125 0.801   0.88
 1.01 Init -   3631   3491  141  1  0   84   56   103 0.627   6.83
 1.00 Prom -   7591   7552   40                              -2.46

 2.03 PlyA -  10010  10005    6                               1.05
 2.02 Term -  16784  16590  195  2  0   70   47   109 0.647   2.41
 2.01 Init -  20126  19257  870  2  0   57   13   188 0.307   2.75
 2.00 Prom -  20263  20224   40                              -5.46

 3.03 PlyA -  23069  23064    6                               1.05
 3.02 Term -  23272  23108  165  1  0  118   46   195 0.998  16.22
 3.01 Init -  24315  24175  141  0  0   86   56   184 0.866  15.13
 3.00 Prom -  25990  25951   40                              -7.96

 4.04 PlyA -  29120  29115    6                               1.05
 4.03 Term -  30237  30016  222  0  0   57   48   123 0.727   2.12
 4.02 Intr -  31372  31241  132  1  0   62   90   107 0.556   9.14
 4.01 Init -  39781  39716   66  1  0   62  100    16 0.044   1.27
 4.00 Prom -  48322  48283   40                              -0.36

 5.00 Prom +  53487  53526   40                              -3.86
 5.01 Init +  65185  65326  142  0  1   25  116    78 0.357   2.83
 5.02 Intr +  68621  68735  115  0  1   69  -29   123 0.351  -1.79
 5.03 Intr +  69369  69450   82  0  1   90   56    68 0.791   3.44
 5.04 Intr +  71854  71944   91  0  1  130   91    35 0.827   7.57
 5.05 Term +  72953  73071  119  0  2  118   42    26 0.636  -0.30
 5.06 PlyA +  74385  74390    6                               1.05

 6.04 PlyA -  74414  74409    6                               1.05
 6.03 Term -  88010  87922   89  0  2   59   43   100 0.349   0.42
 6.02 Intr -  91119  91015  105  1  0  105   55    75 0.540   6.09
 6.01 Init -  91831  91768   64  1  1   46   47    54 0.288  -1.59
 6.00 Prom -  94304  94265   40                              -5.76

 7.07 PlyA -  98041  98036    6                               1.05
 7.06 Term - 100132  99998  135  1  0  -13   48   246 0.983   8.52
 7.05 Intr - 100662 100504  159  0  0   40  109   248 0.012  22.28
 7.04 Intr - 102497 102458   40  1  1  129   53   -26 0.010  -3.77
 7.03 Intr - 102738 102602  137  0  2   27   -1   338 0.010  18.17
 7.02 Intr - 105507 105356  152  1  2   91   92    97 0.524  10.28
 7.01 Init - 106726 106687   40  1  1   57  103    -2 0.355  -2.45
 7.00 Prom - 108500 108461   40                              -7.76

 8.03 PlyA - 108944 108939    6                               1.05
 8.02 Term - 109225 109061  165  1  0  120   48   280 0.999  25.12
 8.01 Init - 110096 109956  141  2  0   93   84   236 0.660  23.83
 8.00 Prom - 111143 111104   40                              -4.66

 9.05 PlyA - 112650 112645    6                               1.05
 9.04 Term - 113148 112984  165  0  0   77   38   219 0.890  13.72
 9.03 Intr - 113792 113647  146  0  2   74  105   254 0.970  25.70
 9.02 Intr - 116726 116658   69  0  0  119   33    56 0.768   2.35
 9.01 Init - 118611 118548   64  0  1   68  105    66 0.923   5.63
 9.00 Prom - 126428 126389   40                              -5.96

10.05 PlyA - 126669 126664    6                               1.05
10.04 Term - 126893 126741  153  2  0  106   48   240 0.999  19.72
10.03 Intr - 129183 129036  148  2  1   49   84   195 0.501  15.44
10.02 Intr - 132112 132004  109  2  1   60  100    48 0.762   2.54
10.01 Init - 133205 133193   13  2  1   73  105     8 0.598   1.40
10.00 Prom - 150671 150632   40                              -4.06

11.09 PlyA - 150679 150674    6                               1.05
11.08 Term - 172994 172836  159  2  0  100   44   389 0.999  33.64
11.07 Intr - 173479 173301  179  2  2   95   99   286 0.953  30.04
11.06 Intr - 176018 175958   61  2  1  107   81    15 0.318   1.01
11.05 Intr - 180324 180202  123  0  0  101  -45   143 0.011   3.08
11.04 Intr - 180683 180537  147  2  0  110   72   219 0.992  22.93
11.03 Intr - 181609 181597   13  0  1   85  110    10 0.154  -2.32
11.02 Intr - 184340 184201  140  2  2  114   27   234 0.133  19.16
11.01 Init - 191774 191622  153  2  0   47  102   203 0.459  17.58
11.00 Prom - 192096 192057   40                             -12.01

12.00 Prom + 192825 192864   40                              -9.16
12.01 Init + 195824 195964  141  1  0   77   50   307 0.793  25.93
12.02 Term + 197000 197143  144  1  0  134   53   216 0.999  20.61
12.03 PlyA + 197316 197321    6                              -1.95

13.03 PlyA - 197574 197569    6                              -0.45
13.02 Term - 199055 199038   18  2  0   75   42    29 0.662  -4.68
13.01 Intr - 199412 199260  153  2  0  118   55   110 0.824  10.97

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 100641 100504  138  0  0   87  109   238 0.983  25.94
S.002 Term - 102738 102598  141  0  0   27   47   351 0.934  22.83
S.003 Term - 180324 180187  138  0  0  101   54   147 0.985  10.56
S.004 Term - 184340 184197  144  2  0  114   42   248 0.861  20.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_1|87_aa
MNIPLGEKVMLDIVAMFRQYSGDDGRMDMPGLVNLMKENFPNFLSGCKCGLLNASIQLGT
GDAKARQSVLGQWGNPSKTHETGYKSS

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_1|264_bp
atgaatatccctctaggtgagaaagtcatgttggacatagtcgcgatgtttcgccaatac
agtggagatgatggtaggatggacatgccaggtctggtgaacttgatgaaggagaacttc
cccaacttcctcagtggctgtaaatgtggtttgctgaatgccagcatccagctgggcact
ggggatgcaaaggcaagacagtcagttttgggccagtgggggaatccttccaaaacacat
gaaactggctacaagtccagctga

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_2|354_aa
MCHSALEGGHFRARPKGTGISVILIRIQPLFLSQKNKVGGITLPDLKLYYKAAVTKTAWY
WYQNTDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKKWGKDSLFNKWCWENWLAICRKLKL
DPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKTAKAKATKAKID
KWDLIKLKSFCTTKETTIRLNRQPTEWEKIFAIYSSDKGLISRIYNELKQIYKKKTNNPI
KKWAKDMNRHFSKDDIYAANRHMKKCSSSLAIREMQIKTTMRYHLTPVRMTNYPNKTYKN
MNKNQKIICFEATESYQSDQDLKALVIQEKEDSINALNIKAASLPEKFISCQVV

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_2|1065_bp
atgtgtcattctgcattggaaggaggacattttagagcaaggcctaagggcacaggtatt
agtgtcatattgatcagaattcaacctttgttcctaagccaaaagaacaaagttggaggc
atcacgctacctgacttaaaactatactacaaggctgcagtgaccaaaacagcatggtac
tggtaccaaaacacagatatagaccaatggaacagaacagagccctcagaaataatgccg
catatctacaactatctgatctttgacaaacctgacaaaaacaagaaatggggaaaggat
tcactatttaataagtggtgctgggaaaactggctagccatatgtagaaagctgaagctg
gatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttaaatgtt
agacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggc
atgggcaaggacttcatgtctaaaacagcaaaagcaaaggcaacaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttctgcacaacaaaagaaactaccatcagactg
aacaggcagcctacagaatgggagaaaatttttgcaatctactcatctgacaaagggcta
atatcaagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatc
aaaaagtgggcaaaggatatgaacagacacttctcaaaagacgacatttatgcagccaac
agacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaactaca
atgagataccatctcacaccagttagaatgactaattatcccaataaaacatataaaaat
atgaataaaaatcagaaaattatctgcttcgaagcaacagaaagctaccaaagtgaccag
gacttgaaggctctggttatccaagagaaagaagactcgatcaatgcactgaacattaaa
gctgcttctcttcctgagaaatttatcagttgtcaagtagtttga

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_3|101_aa
MSNTQAERSIIGMIDMFHKYTRRDDKIEKPSLLTMMKENFPNFLSACDKKGTNYLADVFE
KKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_3|306_bp
atgagcaacactcaagctgagaggtccataataggcatgatcgacatgtttcacaaatac
accagacgtgatgacaagattgagaagccaagcctgctgacgatgatgaaggagaacttc
cccaacttccttagtgcctgtgacaaaaagggcacaaattacctcgccgatgtctttgag
aaaaaggacaagaatgaggataagaagattgatttttctgagtttctgtccttgctggga
gacatagccacagactaccacaagcagagccatggagcagcgccctgttccgggggcagc
cagtga

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_4|139_aa
MIDLFHNNIQEDDTLDKSGLSKELLVKISFLKSCKTAARSGTHNLNKGENRQGRPSHVEP
PRNSGENSLSVSLSRSPNCCTSPEMQLANTTQKDPKQNSWLSRNIPVAPSALSLSPWLLE
VLYGLLKGRPYKASPGSPT

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_4|420_bp
atgattgatctatttcacaataacatccaagaagatgatacactagataagtcaggtctg
tcaaaggagcttttggtgaagatctcttttttaaaaagctgcaagactgctgcccgaagt
gggacacacaacctaaataagggcgagaaccggcaaggacggcccagccacgtggaaccg
cctcgcaactctggcgagaactctctctctgtctctctgtcccgctcccccaactgctgc
acgagtccagagatgcagctggccaacaccacccagaaggaccccaaacagaacagctgg
ctgtctcggaacattcccgtggctccctctgccctgtccctctcaccgtggctcctggaa
gtgctctatggcctattgaaaggacgcccctacaaagcttcccctggttcccccacctga

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_5|182_aa
MAWALRNVAGPCQEGFPSTSASGGNQPSSNSQTGVSIRLVKPPGKRKGADPVGQQFSKCG
PQNGSNNGTWDLTRNTESQATTDLLVTLQGVPTSKKTLTRCSPLTLDFSVSKTDYKGLSK
VGMVRVPGIKGQGYRISRACAVTAPFSTQKPSWKQPSPPGPVILSPVVHNSFYKPSCNGM
LK

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_5|549_bp
atggcatgggcactgaggaatgtggctggcccctgccaggaagggttccccagcacctct
gcttccgggggtaaccagcccagctccaactcccagacaggtgtatctatccgactggtg
aagccaccagggaagagaaaaggagcagaccctgtaggacagcagttctcaaaatgtggt
ccccagaacggcagcaacaacggcacctgggatcttactagaaatacagagtctcaggcc
accacagacctgcttgtaactctgcagggagtccccaccagcaagaagaccctcaccaga
tgcagccccttgaccctggacttctcagtctccaaaactgactacaaggggctgagcaag
gtaggcatggtcagggtgccaggcatcaagggacagggctatcggatcagccgggcctgt
gctgtgacagccccattttccacccagaagccctcctggaagcaaccctcacccccgggc
cccgttattctaagtccagttgttcacaattcattctacaagccctcatgtaatggaatg
ctaaaatag

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_6|85_aa
MALFCVRMVTSAQQYRQCQGCRLHTSDSSILRPLVHNDLGRLKEVWNCCLLENNGRGVKL
QTFAVSVTAHKDSVDPKSEQQQDLL

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_6|258_bp
atggctcttttctgtgtacggatggttacatcggcacagcagtaccgacaatgccaaggt
tgcagactccacacctctgacagctccatccttcgaccccttgtgcacaatgacctgggc
aggttgaaggaggtttggaactgctgcttgctggaaaacaatggcagaggagtgaagctg
cagaccttcgcagtgagtgttacagctcataaagacagtgtggacccaaagagtgagcag
cagcaagatttattgtaa

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_7|220_aa
MPAAWILWAHSHSELHTVMETPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKEL
CLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNKWTLPWEEIKF
PSQLQAQPSAMACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQD
AEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_7|663_bp
atgcctgctgcttggattctctgggctcactcccacagtgagctgcacactgtgatggag
actcctctggagaaggccctgaccactatggtgaccacgtttcacaaatattcggggaga
gagggtagcaaactgaccctgagtaggaaggaactcaaggagctgatcaagaaagagctg
tgtcttggggagatgaaggagagcagcatcgatgacttgatgaagagcctggacaagaac
agcgaccaggagatcgacttcaaggagtactcggtgttcctgaccatgctgtgcatggcc
tacaacgacttctttctagaggacaacaaatggacccttccatgggaggaaataaagttt
ccatcgcagctccaagcccagccctcagccatggcatgccccctggatcaggccattggc
ctcctcgtggccatcttccacaagtactccggcagggagggtgacaagcacaccctgagc
aagaaggagctgaaggagctgatccagaaggagctcaccattggctcgaagctgcaggat
gctgaaattgcaaggctgatggaagacttggaccggaacaaggaccaggaggtgaacttc
caggagtatgtcaccttcctgggggccttggctttgatctacaatgaagccctcaagggc
tga

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_8|101_aa
MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS
NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRKK

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_8|306_bp
atggcgtgccctctggagaaggccctggatgtgatggtgtccaccttccacaagtactcg
ggcaaagagggtgacaagttcaagctcaacaagtcagaactaaaggagctgctgacccgg
gagctgcccagcttcttggggaaaaggacagatgaagctgctttccagaagctgatgagc
aacttggacagcaacagggacaacgaggtggacttccaagagtactgtgtcttcctgtcc
tgcatcgccatgatgtgtaacgaattctttgaaggcttcccagataagcagcccaggaag
aaatga

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_9|147_aa
MVHFSVVSSTSAVGAGEAALEGLSLQGEDGTGKAWVLGAEGEVEVRMARPLEQAVAAIVC
TFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVE
YVRSLACLCLYCHEYFKDCPSEPPCSQ

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_9|444_bp
atggtgcatttctcagtggtcagctccacatctgcagtgggggcgggggaggcggctctg
gaagggctgagtctccaaggagaggacggcacaggcaaggcttgggtgctgggggccgag
ggcgaggtcgaagtgaggatggccaggcctctggagcaggcggtagctgccatcgtgtgc
accttccaggaatacgcagggcgctgtggggacaaatacaagctctgccaggcggagctc
aaggagctgctgcagaaggagctggccacctggaccccgactgagtttcgggaatgtgac
tacaacaaattcatgagtgttctggacaccaacaaggactgcgaggtggactttgtggag
tatgtgcgctcacttgcctgcctctgtctctactgccacgagtacttcaaggactgcccc
tcagagcccccctgctcccagtag

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_10|140_aa
MSKTGWAGASTYCSGTAAALALGEEGVPLSHCLGIWAWNLGSMMCSSLEQALAVLVTTFH
KYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAV
FLALITVMCNDFFQGCPDRP

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_10|423_bp
atgagtaagaccggctgggctggggcttccacctactgctctgggactgctgctgccctg
gccctgggggaggagggtgtgccgctgagtcactgcctgggcatctgggcctggaacctc
ggatccatgatgtgcagttctctggagcaggcgctggctgtgctggtcactaccttccac
aagtactcctgccaagagggcgacaagttcaagctgagtaagggggaaatgaaggaactt
ctgcacaaggagctgcccagctttgtgggggagaaagtggatgaggaggggctgaagaag
ctgatgggcagcctggatgagaacagtgaccagcaggtggacttccaggagtatgctgtt
ttcctggcactcatcactgtcatgtgcaatgacttcttccagggctgcccagaccgaccc
tga

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_11|324_aa
MAAEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKM
KSLDVNQDSELKFNEYWRLIGELAKEIRKKKDLKIRKNGCQQDAQEFSDVERAIETLIKN
FHQYSVEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIANLGSCNDSKLEFRSFWELI
GEAAKSVKLERPKKLQKSTCQMVISSTVHFTEGPASRRSREMSDCYTELEKAVIVLVENF
YKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEY
WTLIGGITGPIAKLIHEQEQQSSS

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_11|975_bp
atggcagcagaaccactgacagagctagaggagtccattgagaccgtggtcaccaccttc
ttcacctttgcaaggcaggagggccggaaggatagcctcagcgtcaacgagttcaaagag
ctggttacccagcagttgccccatctgctcaaggatgtgggctctcttgatgagaagatg
aagagcttggatgtgaatcaggactcggagctcaagttcaatgagtactggagattgatt
ggggagctggccaaggaaatcaggaagaagaaagacctgaagatcaggaagaacggctgc
caacaggatgctcaggaattcagtgatgtggagagggccattgagaccctcatcaagaac
tttcaccagtactccgtggagggtgggaaggagacgctgaccccttctgagctacgggac
ctggtcacccagcagctgccccatctcatgccgagcaactgtggcctggaagagaaaatt
gccaacctgggcagctgcaatgactctaaactggagttcaggagtttctgggagctgatt
ggagaagcggccaagagtgtgaagctggagaggcctaaaaagctccagaaaagcacttgt
cagatggttatctccagcactgtccattttaccgaaggccccgccagcaggcgaagcagg
gagatgtcagactgctacacggagctggagaaggcagtcattgtcctggtggaaaacttc
tacaaatatgtgtctaagtacagcctggtcaagaacaagatcagcaagagcagcttccgc
gagatgctccagaaagagctgaaccacatgctgtcggacacagggaaccggaaggctgcg
gataagctcatccagaacctggatgccaatcatgatgggcgcatcagcttcgatgagtac
tggaccttgataggcggcatcaccggccccatcgccaaactcatccatgagcaggagcag
cagagcagcagctag

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_12|94_aa
MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK
ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_12|285_bp
atgggctctgagctggagacggcgatggagaccctcatcaacgtgttccacgcccactcg
ggcaaagagggggacaagtacaagctgagcaagaaggagctgaaagagctgctgcagacg
gagctctctggcttcctggatgcccagaaggatgtggatgctgtggacaaggtgatgaag
gagctagacgagaatggagacggggaggtggacttccaggagtatgtggtgcttgtggct
gctctcacagtggcctgtaacaatttcttctgggagaacagttga

>gi568815597r:153434699_153635339|GENSCAN_predicted_peptide_13|56_aa
RPPAPARCPKQNGRHVQCLSDRLKWRLRNYVRRQIRARLEGGKDLSYACAEPRYTV

>gi568815597r:153434699_153635339|GENSCAN_predicted_CDS_13|171_bp
cggccgccagctcctgctcggtgtccaaaacaaaatggccgccacgtccagtgcttgtct
gaccggctaaaatggcgtctacgcaattacgtcaggcgtcagatccgcgcacgactagag
ggcgggaaagatttgagctacgcctgcgcagagccaaggtacaccgtctaa