Result of FASTA (omim) for pF1KB8903
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8903, 235 aa
  1>>>pF1KB8903 235 - 235 aa - 235 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5414+/-0.000317; mu= 14.0500+/- 0.020
 mean_var=93.9799+/-18.569, 0's: 0 Z-trim(117.2): 266  B-trim: 33 in 1/55
 Lambda= 0.132299
 statistics sampled from 28600 (28917) to 28600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.339), width:  16
 Scan time:  5.100

The best scores are:                                      opt bits E(85289)
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 1580 311.3 9.4e-85
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 1023 204.8 6.9e-53
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  632 130.3 2.7e-30
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  632 130.3 2.7e-30
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  632 130.3 2.7e-30
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  632 130.4 3.2e-30
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233)  513 107.6 1.9e-23
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  467 98.9 9.3e-21
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230)  443 94.2   2e-19
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  433 92.3 7.1e-19
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  431 92.0 1.1e-18
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242)  417 89.3 6.4e-18
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  413 88.5   1e-17
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  407 87.4 2.6e-17
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  407 87.4 2.6e-17
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  398 85.7 8.1e-17
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  394 84.9 1.4e-16
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243)  392 84.5 1.8e-16
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243)  392 84.5 1.8e-16
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  388 83.9 3.6e-16
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242)  382 82.6 6.6e-16
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290)  369 80.2 4.2e-15
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106)  361 78.3 5.8e-15
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289)  363 79.1 9.2e-15
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  300 67.0 3.9e-11
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  302 67.6   4e-11
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  302 67.6   4e-11
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  302 67.6   4e-11
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  302 67.6   4e-11
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  302 67.6   4e-11
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  302 67.6   4e-11
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  302 67.6   4e-11
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  300 67.1 4.5e-11
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  300 67.1 4.5e-11
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283)  298 66.6 4.9e-11
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  300 67.2 5.1e-11
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  300 67.2 5.2e-11
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  300 67.2 5.2e-11
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  300 67.2 5.2e-11
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  300 67.2 5.2e-11
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  300 67.2 5.2e-11
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  300 67.2 5.2e-11
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  300 67.2 5.6e-11
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  300 67.3 6.4e-11
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  300 67.3 6.4e-11
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  300 67.3 6.4e-11
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  300 67.3 6.4e-11
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  300 67.3 6.4e-11
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  300 67.3 6.4e-11
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  300 67.3 6.4e-11


>>NP_004494 (OMIM: 142972) homeobox protein Hox-C6 isofo  (235 aa)
 initn: 1580 init1: 1580 opt: 1580  Z-score: 1642.6  bits: 311.3 E(85289): 9.4e-85
Smith-Waterman score: 1580; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KB8 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KB8 TERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
              190       200       210       220       230     

>>NP_710160 (OMIM: 142972) homeobox protein Hox-C6 isofo  (153 aa)
 initn: 1023 init1: 1023 opt: 1023  Z-score: 1070.4  bits: 204.8 E(85289): 6.9e-53
Smith-Waterman score: 1023; 100.0% identity (100.0% similar) in 153 aa overlap (83-235:1-153)

             60        70        80        90       100       110  
pF1KB8 PFYSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTA
                                     ::::::::::::::::::::::::::::::
NP_710                               MLSNCRQNTLGHNTQTSIAQDFSSEQGRTA
                                             10        20        30

            120       130       140       150       160       170  
pF1KB8 PQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_710 PQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRI
               40        50        60        70        80        90

            180       190       200       210       220       230  
pF1KB8 EIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_710 EIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK
              100       110       120       130       140       150

          
pF1KB8 QKE
       :::
NP_710 QKE
          

>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 596 init1: 486 opt: 632  Z-score: 664.9  bits: 130.3 E(85289): 2.7e-30
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-229:1-224)

               10         20        30          40        50       
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP
       :.:::.: ..   ::.::.  : .. : :..: ::.::. . :: . .:.. ..:  : :
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
               10        20        30        40        50        60

        60        70         80           90         100       110 
pF1KB8 QENVVFSSSRGPYDYG-SNSFYQEKD---MLSNCRQNTLGHNT--QTSIAQDFSSEQGRT
         .  .. . .: ::: . .::.::.    ::.  ..   :    ... ::: .:  :.:
XP_005 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET
                70        80        90       100       110         

             120       130       140       150       160       170 
pF1KB8 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR
         ..:: :  .::::::::: .. ..: . ::::: :.::::::::::::.:::::::::
XP_005 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR
        120       130       140       150       160       170      

             180       190       200       210       220       230 
pF1KB8 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEE
       ::::.::::::::::::::::::::::::.: :          :..:...::.....:  
XP_005 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE  
        180       190       200                 210       220      

           
pF1KB8 KQKE

>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo  (224 aa)
 initn: 596 init1: 486 opt: 632  Z-score: 664.9  bits: 130.3 E(85289): 2.7e-30
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-229:1-224)

               10         20        30          40        50       
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP
       :.:::.: ..   ::.::.  : .. : :..: ::.::. . :: . .:.. ..:  : :
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
               10        20        30        40        50        60

        60        70         80           90         100       110 
pF1KB8 QENVVFSSSRGPYDYG-SNSFYQEKD---MLSNCRQNTLGHNT--QTSIAQDFSSEQGRT
         .  .. . .: ::: . .::.::.    ::.  ..   :    ... ::: .:  :.:
NP_061 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET
                70        80        90       100       110         

             120       130       140       150       160       170 
pF1KB8 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR
         ..:: :  .::::::::: .. ..: . ::::: :.::::::::::::.:::::::::
NP_061 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR
        120       130       140       150       160       170      

             180       190       200       210       220       230 
pF1KB8 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEE
       ::::.::::::::::::::::::::::::.: :          :..:...::.....:  
NP_061 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE  
        180       190       200                 210       220      

           
pF1KB8 KQKE

>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 596 init1: 486 opt: 632  Z-score: 664.9  bits: 130.3 E(85289): 2.7e-30
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-229:1-224)

               10         20        30          40        50       
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP
       :.:::.: ..   ::.::.  : .. : :..: ::.::. . :: . .:.. ..:  : :
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
               10        20        30        40        50        60

        60        70         80           90         100       110 
pF1KB8 QENVVFSSSRGPYDYG-SNSFYQEKD---MLSNCRQNTLGHNT--QTSIAQDFSSEQGRT
         .  .. . .: ::: . .::.::.    ::.  ..   :    ... ::: .:  :.:
XP_005 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET
                70        80        90       100       110         

             120       130       140       150       160       170 
pF1KB8 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR
         ..:: :  .::::::::: .. ..: . ::::: :.::::::::::::.:::::::::
XP_005 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR
        120       130       140       150       160       170      

             180       190       200       210       220       230 
pF1KB8 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEE
       ::::.::::::::::::::::::::::::.: :          :..:...::.....:  
XP_005 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE  
        180       190       200                 210       220      

           
pF1KB8 KQKE

>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei  (288 aa)
 initn: 596 init1: 486 opt: 632  Z-score: 663.5  bits: 130.4 E(85289): 3.2e-30
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-229:65-288)

                                             10         20         
pF1KB8                               MNSYFTNPSLSCHLAGGQD-VLPNVALNST
                                     :.:::.: ..   ::.::.  : .. : :.
XP_011 GFNAARRSDYKTQQIINPAEQQRPRAPPLPMSSYFVNSTFPVTLASGQESFLGQLPLYSS
           40        50        60        70        80        90    

      30          40        50        60        70         80      
pF1KB8 AY-DPVRHF-STYGAAVAQNRIYSTPFYSPQENVVFSSSRGPYDYG-SNSFYQEKD---M
       .: ::.::. . :: . .:.. ..:  : :  .  .. . .: ::: . .::.::.    
XP_011 GYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRA-APCDYGPAPAFYREKESACA
          100       110       120       130        140       150   

            90         100       110       120       130       140 
pF1KB8 LSNCRQNTLGHNT--QTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADR
       ::.  ..   :    ... ::: .:  :.:  ..:: :  .::::::::: .. ..: . 
XP_011 LSGADEQPPFHPEPRKSDCAQD-KSVFGET--EEQKCSTPVYPWMQRMNSCNSSSFGPSG
           160       170        180         190       200       210

             150       160       170       180       190       200 
pF1KB8 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN
       ::::: :.::::::::::::.:::::::::::::.::::::::::::::::::::::::.
XP_011 RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK
              220       230       240       250       260       270

             210       220       230     
pF1KB8 LTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
       : :          :..:...::.....:      
XP_011 LLS----------ASQLSAEEEEEKQAE      
                        280              

>>NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [Homo  (233 aa)
 initn: 714 init1: 488 opt: 513  Z-score: 542.0  bits: 107.6 E(85289): 1.9e-23
Smith-Waterman score: 696; 49.8% identity (71.2% similar) in 229 aa overlap (1-215:1-229)

               10         20        30         40        50        
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAYDPVRHF-STYGAAVAQNRIYSTPFYSPQ
       :.:::.::..   : .:::  : .. : ...:: .: : ..:::.   .. :..: .  :
NP_076 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
               10        20        30        40        50        60

       60        70        80             90       100             
pF1KB8 ENVVFSSSRGPYDYGSNSFYQEKDMLSNC-----RQNTLGHNTQTSIAQ----DFSSEQG
        : :.. .:. :.::.. ::..::. .       .:   :   . :  :    : :: ::
NP_076 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
               70        80        90       100       110       120

     110          120       130       140       150       160      
pF1KB8 RTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYL
       ..  .   :.: .  .::::::::: .:. ::.  ::::: :.:::::::::::::::::
NP_076 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KB8 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKRE
       :::::::::::::::::::::::::::::::::..: .. . .:  . :           
NP_076 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE       
              190       200       210       220       230          

        230     
pF1KB8 ETEEEKQKE

>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo  (270 aa)
 initn: 455 init1: 430 opt: 467  Z-score: 493.7  bits: 98.9 E(85289): 9.3e-21
Smith-Waterman score: 486; 47.4% identity (68.9% similar) in 196 aa overlap (38-213:75-267)

        10        20        30        40        50           60    
pF1KB8 PSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP---FYSPQENVVFS
                                     .. .:: :. : :: :    .::: . .  
NP_061 YGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPR-YSQPATSTHSPQPDPLPC
           50        60        70        80         90       100   

           70        80        90                  100             
pF1KB8 SSRGPYDYGSNSFYQEKDMLSNCRQNTL-----------GHNTQTSIAQDF--SSEQG--
       :. .: . ::.: .  :. :::    .            : .: ..  .:   ::::.  
NP_061 SAVAP-SPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASA
            110       120       130       140       150       160  

     110        120       130        140       150       160       
pF1KB8 RTAPQDQK-ASIQIYPWMQRMN-SHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLT
       .. :.    :. ::::::.... ::...: : . .:.:  :.::::::::::::::::::
NP_061 QSEPSPAPPAQPQIYPWMRKLHISHDNIG-GPEGKRARTAYTRYQTLELEKEFHFNRYLT
            170       180       190        200       210       220 

       170       180       190       200       210       220       
pF1KB8 RRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREE
       ::::::::.::::.:::::::::::::::::...: :   ...:::              
NP_061 RRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP           
             230       240       250       260       270           

       230     
pF1KB8 TEEEKQKE

>>NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [Homo  (230 aa)
 initn: 480 init1: 398 opt: 443  Z-score: 469.8  bits: 94.2 E(85289): 2e-19
Smith-Waterman score: 478; 39.2% identity (65.4% similar) in 240 aa overlap (2-235:3-229)

                10        20        30        40        50         
pF1KB8  MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP-FYSPQ
         .::..:  .: . ::.. .. :.  .: .. :  . : :::. :     ..: .:. .
NP_008 MSSSYYVNALFSKYTAGAS-LFQNAEPTSCSFAPNSQRSGYGAG-AGAFASTVPGLYNVN
               10         20        30        40         50        

       60        70        80        90       100       110        
pF1KB8 ENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKA
         .  :   . :  :.... .     ..  ::  :  .. . .   ....: .     .:
NP_008 SPLYQSPFASGYGLGADAYGNLP--CASYDQNIPGLCSDLAKGACDKTDEG-ALHGAAEA
       60        70        80          90       100        110     

      120       130       140       150       160       170        
pF1KB8 SIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANAL
       ...:::::.        . : ::.:::: :.::::::::::::::::::::::::::.::
NP_008 NFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL
         120               130       140       150       160       

      180       190       200            210       220       230   
pF1KB8 CLTERQIKIWFQNRRMKWKKESNLTSTLS-----GGGGGATADSLGGKEEKREETEEEKQ
       ::::::::::::::::::::: .  .  .     :.  .:.: . . : ..... :::..
NP_008 CLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEED
       170       180       190       200       210       220       

          
pF1KB8 KE 
       .: 
NP_008 EEE
       230

>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo  (217 aa)
 initn: 415 init1: 383 opt: 433  Z-score: 459.8  bits: 92.3 E(85289): 7.1e-19
Smith-Waterman score: 450; 42.0% identity (63.2% similar) in 231 aa overlap (2-227:8-217)

                      10        20        30        40        50   
pF1KB8       MNSYFTN-PSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP
              :. :.. :. :  .: :  ..:. .  . : .: :    :::. . .   :  
NP_004 MSSLYYANTLFSKYPASSSVFATG--AFPEQTSCAFASNPQR--PGYGAGSGASFAASMQ
               10        20          30        40          50      

             60        70        80           90       100         
pF1KB8 -FYSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNC---RQNTLGHNTQTSIAQDFSSEQG
        .:    ... .:. : :  : .   .  .:  .:   .::  :     :     ..:: 
NP_004 GLYPGGGGMAGQSAAGVYAAGYGLEPSSFNM--HCAPFEQNLSGVCPGDSAKAAGAKEQ-
         60        70        80          90       100       110    

     110       120       130       140       150       160         
pF1KB8 RTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRR
       : .    .....:::::.        . :.::.:::: :.::::::::::::.:::::::
NP_004 RDSDLAAESNFRIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRR
           120       130               140       150       160     

     170       180       190       200       210       220         
pF1KB8 RRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETE
       ::::::..:::::::::::::::::::::: : :.     : :.:... .  ::..::  
NP_004 RRIEIAHTLCLTERQIKIWFQNRRMKWKKE-NKTA-----GPGTTGQDRAEAEEEEEE  
         170       180       190             200       210         

     230     
pF1KB8 EEKQKE




235 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:04:28 2016 done: Sat Nov  5 20:04:28 2016
 Total Scan time:  5.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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