Result of FASTA (omim) for pF1KE0205
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0205, 214 aa
  1>>>pF1KE0205 214 - 214 aa - 214 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7554+/-0.000347; mu= 16.7916+/- 0.022
 mean_var=60.2944+/-11.920, 0's: 0 Z-trim(114.3): 10  B-trim: 0 in 0/55
 Lambda= 0.165172
 statistics sampled from 23996 (24002) to 23996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.281), width:  16
 Scan time:  5.820

The best scores are:                                      opt bits E(85289)
NP_006004 (OMIM: 300847,312173) 60S ribosomal prot ( 214) 1438 350.7   1e-96
NP_001290553 (OMIM: 300847,312173) 60S ribosomal p ( 214) 1438 350.7   1e-96
NP_001290554 (OMIM: 300847,312173) 60S ribosomal p ( 214) 1438 350.7   1e-96
NP_001243509 (OMIM: 300847,312173) 60S ribosomal p ( 178)  998 245.8 3.3e-65
NP_001243506 (OMIM: 300847,312173) 60S ribosomal p ( 216)  767 190.8 1.4e-48
NP_001290555 (OMIM: 300847,312173) 60S ribosomal p ( 145)  763 189.8   2e-48


>>NP_006004 (OMIM: 300847,312173) 60S ribosomal protein   (214 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1857.3  bits: 350.7 E(85289): 1e-96
Smith-Waterman score: 1438; 95.8% identity (99.1% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_006 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       :::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
NP_006 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_006 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
       ::::::.: ::::::::::.::.:::::::.:::
NP_006 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
              190       200       210    

>>NP_001290553 (OMIM: 300847,312173) 60S ribosomal prote  (214 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1857.3  bits: 350.7 E(85289): 1e-96
Smith-Waterman score: 1438; 95.8% identity (99.1% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       :::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
       ::::::.: ::::::::::.::.:::::::.:::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
              190       200       210    

>>NP_001290554 (OMIM: 300847,312173) 60S ribosomal prote  (214 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1857.3  bits: 350.7 E(85289): 1e-96
Smith-Waterman score: 1438; 95.8% identity (99.1% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       :::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
       ::::::.: ::::::::::.::.:::::::.:::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
              190       200       210    

>>NP_001243509 (OMIM: 300847,312173) 60S ribosomal prote  (178 aa)
 initn: 1199 init1: 997 opt: 998  Z-score: 1291.8  bits: 245.8 E(85289): 3.3e-65
Smith-Waterman score: 1131; 79.4% identity (82.7% similar) in 214 aa overlap (1-214:1-178)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       :::::::::::::::::::::::::::                                 
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVP---------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
          ::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
NP_001 ---ALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
           30        40        50        60        70        80    

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
           90       100       110       120       130       140    

              190       200       210    
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
       ::::::.: ::::::::::.::.:::::::.:::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
          150       160       170        

>>NP_001243506 (OMIM: 300847,312173) 60S ribosomal prote  (216 aa)
 initn: 767 init1: 767 opt: 767  Z-score: 993.1  bits: 190.8 E(85289): 1.4e-48
Smith-Waterman score: 767; 92.4% identity (94.9% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       :::::::::::::::::::::.::::.:::::::::::::::::::::::  .   ::  
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRSTSQRSGASP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
                                                                   
NP_001 SSMLMNLKTWWLKSGSSQMAVGSSTSPVVALWTSGGPCTHEGFQCAAPLLILTNKFYFLS
              130       140       150       160       170       180

>>NP_001290555 (OMIM: 300847,312173) 60S ribosomal prote  (145 aa)
 initn: 775 init1: 761 opt: 763  Z-score: 990.4  bits: 189.8 E(85289): 2e-48
Smith-Waterman score: 763; 88.1% identity (92.1% similar) in 126 aa overlap (1-125:1-126)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       :::::::::::::::::::::.::::.:::::::::::::::::::::::    .  : :
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRHARCLWKAPG
               70        80        90       100       110       120

               130       140       150       160       170         
pF1KE0 K-PQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNAD
       .  ::.                                                      
NP_001 HCGQGSHWPSYHVHPHQAAEQGACD                                   
              130       140                                        




214 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:22:25 2016 done: Thu Nov  3 21:22:25 2016
 Total Scan time:  5.820 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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