GENSCAN 1.0	Date run:  5-Nov-116	Time: 00:24:31

Sequence gi568815590r:38500685_38701200 : 200516 bp : 45.32% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init -   1661   1598   64  2  1  113   80    77 0.154  10.71
 1.00 Prom -   8161   8122   40                              -4.56

 2.00 Prom +  10774  10813   40                              -4.06
 2.01 Init +  18908  18980   73  1  1   77   89    51 0.255   5.33
 2.02 Intr +  19532  19554   23  0  2   93   92    -1 0.116  -1.94
 2.03 Intr +  27206  27390  185  1  2   79   58    84 0.123   3.09
 2.04 Term +  27993  28020   28  0  1  147   52    25 0.663   2.35
 2.05 PlyA +  28689  28694    6                               1.05

 3.07 PlyA -  30501  30496    6                               1.05
 3.06 Term -  43162  43103   60  1  0  100   49    69 0.782   2.00
 3.05 Intr -  56175  55875  301  2  1   36  -78   882 0.075  63.14
 3.04 Intr -  60856  60739  118  2  1    3   75   106 0.475   0.32
 3.03 Intr -  66520  66370  151  1  1   77   23    52 0.061  -2.66
 3.02 Intr -  67107  66913  195  0  0  110   78    65 0.248   7.31
 3.01 Init -  75617  75516  102  2  0   63   66    81 0.184   3.67
 3.00 Prom -  75974  75935   40                              -9.95

 4.00 Prom +  76016  76055   40                              -5.06
 4.01 Init +  76073  76158   86  1  2  104   30    52 0.250   1.29
 4.02 Intr +  77361  77379   19  0  1   94  100     5 0.321  -1.09
 4.03 Intr +  78095  78225  131  1  2  111  109    86 0.989  12.49
 4.04 Intr +  87304  87415  112  1  1   57   92    48 0.113   2.48
 4.05 Intr +  88946  89015   70  1  1   81   60     8 0.009  -3.95
 4.06 Intr +  92906  93055  150  0  0   80   88     7 0.013   0.03
 4.07 Intr +  98905  98934   30  2  0   93  103    41 0.018   4.20
 4.08 Intr + 111939 112071  133  1  1  115   64    66 0.483   6.60
 4.09 Intr + 119930 120026   97  2  1   74   31    66 0.064  -0.49
 4.10 Term + 130967 131356  390  1  0   76   41   213 0.882  10.39
 4.11 PlyA + 134310 134315    6                               1.05

 5.00 Prom + 141454 141493   40                              -5.36
 5.01 Init + 142316 142329   14  1  2  110   50     0 0.304  -2.03
 5.02 Term + 149972 150413  442  2  1   87   42   247 0.927  14.73
 5.03 PlyA + 150660 150665    6                               1.05

 6.00 Prom + 158230 158269   40                              -1.36
 6.01 Init + 161246 161299   54  1  0   77   98   -13 0.227  -2.10
 6.02 Intr + 162106 162129   24  0  0  108   80    18 0.506   1.22
 6.03 Intr + 162227 162355  129  1  0   49  108    44 0.674   3.39
 6.04 Intr + 170796 170885   90  2  0   36   21   137 0.059   1.99
 6.05 Term + 175456 175626  171  0  0   10   38   201 0.670   5.13
 6.06 PlyA + 176301 176306    6                               1.05

 7.03 PlyA - 180029 180024    6                               1.05
 7.02 Term - 181719 181616  104  1  2   92   55    47 0.157   0.24
 7.01 Init - 193473 193413   61  0  1  121   49    43 0.450   5.11

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  56175  55809  367  2  1   36   51   790 0.862  64.18
S.002 Term + 170796 170900  105  2  0   36   48   154 0.838   4.61


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:38500685_38701200|GENSCAN_predicted_peptide_1|22_aa
METPLGIQDEQPDRKAPVGSGX

>gi568815590r:38500685_38701200|GENSCAN_predicted_CDS_1|66_bp
atggagacgccgctgggcattcaggacgagcagcctgacaggaaggctcccgtaggctct
ggagnn

>gi568815590r:38500685_38701200|GENSCAN_predicted_peptide_2|102_aa
MGIIRMKENVCKTYSTMPTTGLILSRCAALNWFLPLQNEGLEMQDSKIVAISDSDNNPVS
LKNSALLLHRGFQQEAGTDGFLWNVFRNVVCDVRKIFNICAI

>gi568815590r:38500685_38701200|GENSCAN_predicted_CDS_2|309_bp
atgggcatcattaggatgaaagaaaacgtgtgtaaaacttacagcacgatgcctacaaca
gggctgatcctcagcagatgtgctgctttgaactggttcctccctctgcaaaacgaaggg
cttgaaatgcaggattctaagattgtggccatctctgactctgataacaaccccgtgagc
ctgaagaattcagcactgctgctccatagggggtttcagcaggaagcgggcacagatggc
tttctctggaacgtgttcagaaatgtggtgtgtgatgtacggaagatcttcaatatctgt
gccatttga

>gi568815590r:38500685_38701200|GENSCAN_predicted_peptide_3|308_aa
MRSLGEEEVHTSPRLLGIQIQSVFIKPMMEEAQQCPTFNQLNALFCHSESPCLNSEEVIV
STPCYQCFSLIHSVDSFSSVSSMGQALPGEQLAAPILKECLSSLPSSWEDEQGPLWRGES
RKETVPGAVGHRNNKNCTQHTPKEQQWDRVLKAAETAGGLRAGDGTATVKFRKITVASVW
GVVKEQESSLGNTARLSLKNEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
EEEEEEEEEEEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKGRKTDLGRTHTELNLYR
RVDEDKHL

>gi568815590r:38500685_38701200|GENSCAN_predicted_CDS_3|927_bp
atgaggtccctgggggaagaagaggttcataccagtcccagacttttgggcattcaaatc
cagtcagtgttcatcaagcccatgatggaggaggcacagcagtgtcccaccttcaatcag
ctgaatgctctcttttgtcattctgaatctccttgtctgaactctgaagaggtcattgtt
tctactccttgctaccagtgtttcagtttaattcattcagttgatagtttttcttcagtc
tcctccatgggccaggccctgccaggtgaacagctcgcagccccaatcctcaaggagtgt
ttatcttcccttccaagcagctgggaggatgagcagggtccactgtggagaggagaaagc
aggaaagagactgtacctggagccgtgggtcaccggaacaacaagaactgcacacaacac
accccgaaggaacagcagtgggacagagtcctgaaggctgcggaaactgctggagggctt
cgagcaggggatggcacagccacagtgaagtttagaaaaatcactgtggcctcggtgtgg
ggtgtagtgaaggagcaagagagcagcctgggcaacacagcaagactcagtctcaaaaat
gaagaagaagaagaagaagaagaagaagaggaagaggaagaggaagaggaagaggaagag
gaagaggaagaagaagaagaggaagaagaagaggaagaagaagaggaagaagaagaggaa
gaagaagaagaagaagaagaggaggaagaggaggaggaggaggaggaggaggagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaaaggaaggaaaactgaccttggccgcacacatacagagctgaacttgtatcgc
cgtgtagatgaagacaaacacctttag

>gi568815590r:38500685_38701200|GENSCAN_predicted_peptide_4|405_aa
MAMSVTSGRPHCYTPTSAMTVYKCHGNVRNSNEAKWTEPFPVALLAIQAMVVTLLHSLSP
YIGPQIFPIFLYTLCTCFSLWSVTPLHSKGFIFVSAFLGEWAWLGDVTVDPGFCHWLHLI
EPDSKAANSWAAHGLWESWEPTQVRRNQKTNSGNMTKQDSLTPPKNYTSSQQWTQTKKKS
LIYLKKNSGDPGASHGTLGGPPVLATASHHPNSVQAWVLFDRLSPEYCSLVNKEFSEKKA
EGLGASGSDWNLHHWLSDSQDFEIYRWLSWVSSLQMFHLHPKWKATQVNEWDLIIMVIII
IITVVQSLLSASTMRSALCHLMKLKLNFTKEQTEAWNNLSESQRQKVIHREVCVTLAGAN
SSLFLPLYSLLYLPLLWARHTAMLKVQRDLEKYSLPQEERLHTCD

>gi568815590r:38500685_38701200|GENSCAN_predicted_CDS_4|1218_bp
atggcgatgagtgtgacctctggtcgtcctcactgctacactcccaccagtgccatgaca
gtttacaaatgccatggcaatgtcagaaattcaaatgaggcaaagtggacagagccattc
cccgtggccctgctggcaatccaggcaatggttgtcaccctcttacattccctcagcccc
tacattggtcctcagatcttcccaatcttcctctatactctctgcacctgcttcagcttg
tggtctgttactcctctgcattcaaaaggattcatctttgtcagtgcctttctgggagag
tgggcctggcttggagatgtcactgtggatccaggattttgccactggctgcacttgatt
gaacctgactcaaaagcagccaactcatgggctgcccatggcctgtgggagtcttgggag
cctacccaagtaagaaggaaccagaaaaccaactctggtaatatgacaaaacaagattct
ttaacaccccccaaaaattacactagctcacagcaatggacccaaaccaagaagaaatcc
ctgatttaccttaaaaagaattcaggagaccctggtgcttcccacgggaccctgggtggg
cctcctgttcttgccacagcctcccaccaccccaactcagtccaggcctgggtcctcttt
gacaggctgtcccctgagtactgttcattggtgaacaaagagttcagtgaaaagaaggca
gaaggcctgggggcttcaggctcagactggaacctgcaccactggctctctgactctcag
gactttgaaatataccgctggctttcctgggtctccagcttgcagatgtttcatctccat
cctaaatggaaagctacccaagtgaatgagtgggacctcatcatcatggtcatcatcatc
atcatcacagttgtgcagagcttactatctgccagcaccatgcgaagtgccctatgccat
ttaatgaaattgaagcttaattttacaaaggagcaaacagaagcttggaataacttgtct
gagtcacagagacagaaagtgattcatagagaggtctgtgtaactctggctggtgctaac
agtagcttgttcctacctctgtactccctgctgtatctcccgctgctctgggcccggcac
acagcgatgctcaaagtacagagagatctagagaaatacagcctgccccaggaggaacgg
ctccatacatgtgactga

>gi568815590r:38500685_38701200|GENSCAN_predicted_peptide_5|151_aa
MPGQGIPLKRDSCNDFQMSASCLLADWGGCGKLRDGNQNPHQMCHVNVSLAHIWLQCRPP
APEQMAAFPLYSASQRSPVKRRWGRNGRGLRGRDAATPSLGRGAGPVLAAVGPGSLEAEP
RALFPRGAAVGWPGGQNEGLRDGVRKKIVRV

>gi568815590r:38500685_38701200|GENSCAN_predicted_CDS_5|456_bp
atgcctggtcaagggatccccttgaagcgtgacagctgcaatgacttccagatgtccgcc
tcctgtctcctagccgactggggtggatgtggtaaactccgcgatggaaaccaaaacccc
caccagatgtgccatgtcaacgtcagcctcgcgcacatctggcttcaatgccggccgcca
gccccagaacaaatggcggctttcccgctgtattcagctagtcagcgttccccggttaaa
aggcgctggggcaggaacggccggggccttcgggggcgcgacgcggcgacgcccagcctg
ggaaggggcgcggggcccgtgttggccgcggtgggtcccggctccctggaggctgagccc
cgggcgctctttcctcgcggcgctgccgtggggtggccgggagggcagaacgaggggctg
cgggacggtgttcggaagaaaatcgtgcgagtttaa

>gi568815590r:38500685_38701200|GENSCAN_predicted_peptide_6|155_aa
MGQSWWLTPVIPALWEAKVYQNPFEKKYGESIPTGHFQIFHHCIKALNKEAFYILSQSLA
KQKQLSMPQSQALHPCGLDEFPLTTKEEEEEECAVLVQQGYTKYIIMNFQDVGIKEKLQQ
AFKEREREKSYMQIIKYQKGIGFLNSNPESQNAVK

>gi568815590r:38500685_38701200|GENSCAN_predicted_CDS_6|468_bp
atgggccagtcttggtggctcacaccagtaatcccagcactttgggaggctaaggtttac
caaaatccttttgaaaaaaaatatggtgagtccatacctacaggtcactttcagatattc
caccactgtatcaaagccctcaacaaagaagccttctacatcctttctcagtcattagcc
aagcaaaagcaattgtcaatgcctcaaagccaagccctgcacccctgtggcttggatgag
ttccctttgaccaccaaggaagaggaggaagaggagtgcgcagtcctcgtgcagcagggt
tacaccaagtacatcatcatgaattttcaggatgttgggatcaaggaaaagctccaacaa
gctttcaaagagagagagagagagaaaagttacatgcaaattatcaagtatcaaaaaggt
attggatttctcaacagcaacccagaaagtcagaatgcagtgaagtaa

>gi568815590r:38500685_38701200|GENSCAN_predicted_peptide_7|54_aa
MAGLQAVFLLELGERGKDDGARGILFVFKSQQFSQNALKPAGFEQLERAVLAFC

>gi568815590r:38500685_38701200|GENSCAN_predicted_CDS_7|165_bp
atggctggcctccaagctgtcttcttactagaactgggagaaagaggaaaggatgatggg
gcgcggggcatcctgtttgtttttaaaagccaacaattttcccagaatgcactgaaacca
gcaggttttgaacaactcgagagagctgtgctggccttctgctga