Result of FASTA (omim) for pF1KB6485
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6485, 328 aa
  1>>>pF1KB6485 328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1927+/-0.00038; mu= 16.7588+/- 0.024
 mean_var=72.7537+/-14.658, 0's: 0 Z-trim(112.7): 61  B-trim: 0 in 0/53
 Lambda= 0.150365
 statistics sampled from 21735 (21796) to 21735 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.256), width:  16
 Scan time:  7.890

The best scores are:                                      opt bits E(85289)
NP_002869 (OMIM: 602954,614291) DNA repair protein ( 328) 2075 459.5 4.4e-129
NP_001136043 (OMIM: 602954,614291) DNA repair prot ( 348) 1531 341.5 1.5e-93
NP_598332 (OMIM: 602954,614291) DNA repair protein ( 216) 1069 241.1 1.6e-63
NP_001308739 (OMIM: 602948) DNA repair protein RAD ( 347)  311 76.8 7.2e-14
NP_001308738 (OMIM: 602948) DNA repair protein RAD ( 347)  311 76.8 7.2e-14
NP_001308747 (OMIM: 602948) DNA repair protein RAD ( 347)  311 76.8 7.2e-14
NP_001308748 (OMIM: 602948) DNA repair protein RAD ( 348)  311 76.8 7.2e-14
NP_002868 (OMIM: 602948) DNA repair protein RAD51  ( 350)  311 76.8 7.2e-14
NP_598194 (OMIM: 602948) DNA repair protein RAD51  ( 350)  311 76.8 7.2e-14
NP_001308741 (OMIM: 602948) DNA repair protein RAD ( 351)  311 76.8 7.3e-14
NP_001308743 (OMIM: 602948) DNA repair protein RAD ( 351)  311 76.8 7.3e-14
NP_598193 (OMIM: 602948) DNA repair protein RAD51  ( 384)  311 76.9 7.8e-14
NP_001308750 (OMIM: 602948) DNA repair protein RAD ( 425)  311 76.9 8.4e-14
XP_016877034 (OMIM: 602948) PREDICTED: DNA repair  ( 500)  297 73.9 7.8e-13
XP_011535352 (OMIM: 602948) PREDICTED: DNA repair  ( 274)  281 70.3 5.4e-12
XP_011535353 (OMIM: 602948) PREDICTED: DNA repair  ( 258)  279 69.8   7e-12
NP_001308744 (OMIM: 602948) DNA repair protein RAD ( 332)  270 67.9 3.3e-11
XP_011520159 (OMIM: 114480,179617,614508) PREDICTE ( 339)  242 61.9 2.3e-09
XP_011520160 (OMIM: 114480,179617,614508) PREDICTE ( 339)  242 61.9 2.3e-09
XP_006720689 (OMIM: 114480,179617,614508) PREDICTE ( 339)  242 61.9 2.3e-09
NP_002866 (OMIM: 114480,179617,614508) DNA repair  ( 339)  242 61.9 2.3e-09
XP_011520162 (OMIM: 114480,179617,614508) PREDICTE ( 339)  242 61.9 2.3e-09
XP_011520161 (OMIM: 114480,179617,614508) PREDICTE ( 339)  242 61.9 2.3e-09
XP_011520163 (OMIM: 114480,179617,614508) PREDICTE ( 280)  196 51.8   2e-06
NP_001157742 (OMIM: 114480,179617,614508) DNA repa ( 280)  196 51.8   2e-06
NP_597994 (OMIM: 114480,179617,614508) DNA repair  ( 340)  191 50.8 4.9e-06
NP_001157741 (OMIM: 114480,179617,614508) DNA repa ( 340)  191 50.8 4.9e-06
NP_008999 (OMIM: 602721) meiotic recombination pro ( 340)  184 49.3 1.4e-05
XP_011535440 (OMIM: 114480,600675,613972) PREDICTE ( 346)  182 48.9 1.9e-05
NP_001093589 (OMIM: 114480,600675,613972) DNA repa ( 346)  182 48.9 1.9e-05
XP_005268103 (OMIM: 114480,600675,613972) PREDICTE ( 346)  182 48.9 1.9e-05
NP_001093588 (OMIM: 114480,600675,613972) DNA repa ( 346)  182 48.9 1.9e-05
NP_005423 (OMIM: 114480,600675,613972) DNA repair  ( 346)  182 48.9 1.9e-05
XP_011528137 (OMIM: 602721) PREDICTED: meiotic rec ( 362)  182 48.9   2e-05
XP_011528136 (OMIM: 602721) PREDICTED: meiotic rec ( 362)  182 48.9   2e-05
XP_006722065 (OMIM: 189960,602774,613390,613399) P ( 342)  163 44.7 0.00033
NP_478123 (OMIM: 189960,602774,613390,613399) DNA  ( 376)  163 44.8 0.00035
XP_006722064 (OMIM: 189960,602774,613390,613399) P ( 377)  163 44.8 0.00035
NP_001308746 (OMIM: 602948) DNA repair protein RAD ( 231)  156 43.1 0.00069
XP_016877036 (OMIM: 602948) PREDICTED: DNA repair  ( 306)  156 43.2 0.00086
XP_011520164 (OMIM: 114480,179617,614508) PREDICTE ( 215)  154 42.6 0.00088


>>NP_002869 (OMIM: 602954,614291) DNA repair protein RAD  (328 aa)
 initn: 2075 init1: 2075 opt: 2075  Z-score: 2438.4  bits: 459.5 E(85289): 4.4e-129
Smith-Waterman score: 2075; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
              250       260       270       280       290       300

              310       320        
pF1KB6 QPTGFQEMVDIGTWGTSEQSATLQGDQT
       ::::::::::::::::::::::::::::
NP_002 QPTGFQEMVDIGTWGTSEQSATLQGDQT
              310       320        

>>NP_001136043 (OMIM: 602954,614291) DNA repair protein   (348 aa)
 initn: 1824 init1: 1530 opt: 1531  Z-score: 1800.3  bits: 341.5 E(85289): 1.5e-93
Smith-Waterman score: 1783; 85.6% identity (89.4% similar) in 348 aa overlap (1-328:1-348)

               10        20        30        40        50          
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA-
       ::::::::::::::::::::::::::::::::::::::::::::::::.  :     :. 
NP_001 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG
               10        20        30        40        50        60

       60          70              80                  90       100
pF1KB6 -QFSAFPV--NGADLYEELKTS------TAILS--------TGIGS--LDKLLDAGLYTG
        :.   :.  . . . . :: .      :  ::        :....  ::::::::::::
NP_001 LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KB6 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KB6 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
              190       200       210       220       230       240

              230       240       250       260       270       280
pF1KB6 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
              250       260       270       280       290       300

              290       300       310       320        
pF1KB6 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
              310       320       330       340        

>>NP_598332 (OMIM: 602954,614291) DNA repair protein RAD  (216 aa)
 initn: 1069 init1: 1069 opt: 1069  Z-score: 1261.6  bits: 241.1 E(85289): 1.6e-63
Smith-Waterman score: 1141; 65.9% identity (65.9% similar) in 328 aa overlap (1-328:1-216)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
       :::::::::::::::::::::::::::::::::::::::::::::::::           
NP_598 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKA-----------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB6 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
                                                                   
NP_598 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB6 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
                                                :::::::::::::::::::
NP_598 -----------------------------------------EALRRIQVVHAFDIFQMLD
                                               50        60        

              190       200       210       220       230       240
pF1KB6 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
       70        80        90       100       110       120        

              250       260       270       280       290       300
pF1KB6 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
      130       140       150       160       170       180        

              310       320        
pF1KB6 QPTGFQEMVDIGTWGTSEQSATLQGDQT
       ::::::::::::::::::::::::::::
NP_598 QPTGFQEMVDIGTWGTSEQSATLQGDQT
      190       200       210      

>>NP_001308739 (OMIM: 602948) DNA repair protein RAD51 h  (347 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 370.0  bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 324; 28.2% identity (57.1% similar) in 354 aa overlap (11-325:10-346)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :   ....
NP_001  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
                10        20        30        40        50         

               70           80        90       100       110       
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
         :  .. :   .  ..   : :.::: ...::. : .:.  : .:::.: :: :::: :
NP_001 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
       60        70        80        90       100       110        

       120             130       140       150       160        170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
       . :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  :
NP_001 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
      120       130        140       150       160       170       

              180       190       200       210           220      
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
       : .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   .
NP_001 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
       180       190        200         210       220       230    

        230       240       250       260                          
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
       . . :  :: ::..... :..::.::    :: :       .::                
NP_001 LAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCVI
          240       250       260        270       280       290   

             270       280       290       300       310       320 
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
         :: .::   .::..:. ...      ::.  .:::   :  :  .:    .  .:.. 
NP_001 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
           300       310            320         330           340  

              
pF1KB6 TLQGDQT
       .:::   
NP_001 VLQGL  
              

>>NP_001308738 (OMIM: 602948) DNA repair protein RAD51 h  (347 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 370.0  bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 324; 28.2% identity (57.1% similar) in 354 aa overlap (11-325:10-346)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :   ....
NP_001  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
                10        20        30        40        50         

               70           80        90       100       110       
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
         :  .. :   .  ..   : :.::: ...::. : .:.  : .:::.: :: :::: :
NP_001 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
       60        70        80        90       100       110        

       120             130       140       150       160        170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
       . :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  :
NP_001 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
      120       130        140       150       160       170       

              180       190       200       210           220      
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
       : .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   .
NP_001 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
       180       190        200         210       220       230    

        230       240       250       260                          
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
       . . :  :: ::..... :..::.::    :: :       .::                
NP_001 LAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCVI
          240       250       260        270       280       290   

             270       280       290       300       310       320 
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
         :: .::   .::..:. ...      ::.  .:::   :  :  .:    .  .:.. 
NP_001 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
           300       310            320         330           340  

              
pF1KB6 TLQGDQT
       .:::   
NP_001 VLQGL  
              

>>NP_001308747 (OMIM: 602948) DNA repair protein RAD51 h  (347 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 370.0  bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 324; 28.2% identity (57.1% similar) in 354 aa overlap (11-325:10-346)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :   ....
NP_001  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
                10        20        30        40        50         

               70           80        90       100       110       
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
         :  .. :   .  ..   : :.::: ...::. : .:.  : .:::.: :: :::: :
NP_001 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
       60        70        80        90       100       110        

       120             130       140       150       160        170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
       . :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  :
NP_001 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
      120       130        140       150       160       170       

              180       190       200       210           220      
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
       : .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   .
NP_001 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
       180       190        200         210       220       230    

        230       240       250       260                          
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
       . . :  :: ::..... :..::.::    :: :       .::                
NP_001 LAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCVI
          240       250       260        270       280       290   

             270       280       290       300       310       320 
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
         :: .::   .::..:. ...      ::.  .:::   :  :  .:    .  .:.. 
NP_001 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
           300       310            320         330           340  

              
pF1KB6 TLQGDQT
       .:::   
NP_001 VLQGQ  
              

>>NP_001308748 (OMIM: 602948) DNA repair protein RAD51 h  (348 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 370.0  bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (11-305:10-333)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :  . ...
NP_001  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
                10        20        30        40        50         

                   70        80        90       100       110      
pF1KB6 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
        .  :    . :    .    : :.::: ...::. : .:.  : .:::.: :: :::: 
NP_001 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
        60        70        80        90       100       110       

        120             130       140       150       160          
pF1KB6 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
       :. :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  
NP_001 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
       120       130        140       150       160       170      

     170       180       190       200       210           220     
pF1KB6 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
       :: .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   
NP_001 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
        180       190        200         210       220       230   

         230       240       250       260                         
pF1KB6 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
       .. . :  :: ::..... :..::.::    :: :       .::               
NP_001 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
           240       250       260        270       280       290  

              270       280       290       300        310         
pF1KB6 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
          :: .::   .::..:. ...      ::.  .:::   : :.:              
NP_001 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQAG
            300       310            320       330       340       

     320        
pF1KB6 SATLQGDQT
                
NP_001 K        
                

>>NP_002868 (OMIM: 602948) DNA repair protein RAD51 homo  (350 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 369.9  bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (11-305:10-333)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :  . ...
NP_002  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
                10        20        30        40        50         

                   70        80        90       100       110      
pF1KB6 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
        .  :    . :    .    : :.::: ...::. : .:.  : .:::.: :: :::: 
NP_002 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
        60        70        80        90       100       110       

        120             130       140       150       160          
pF1KB6 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
       :. :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  
NP_002 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
       120       130        140       150       160       170      

     170       180       190       200       210           220     
pF1KB6 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
       :: .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   
NP_002 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
        180       190        200         210       220       230   

         230       240       250       260                         
pF1KB6 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
       .. . :  :: ::..... :..::.::    :: :       .::               
NP_002 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
           240       250       260        270       280       290  

              270       280       290       300        310         
pF1KB6 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
          :: .::   .::..:. ...      ::.  .:::   : :.:              
NP_002 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQAY
            300       310            320       330       340       

     320        
pF1KB6 SATLQGDQT
                
NP_002 GNS      
       350      

>>NP_598194 (OMIM: 602948) DNA repair protein RAD51 homo  (350 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 369.9  bits: 76.8 E(85289): 7.2e-14
Smith-Waterman score: 326; 28.1% identity (57.6% similar) in 356 aa overlap (11-327:10-348)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :   ....
NP_598  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
                10        20        30        40        50         

               70           80        90       100       110       
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
         :  .. :   .  ..   : :.::: ...::. : .:.  : .:::.: :: :::: :
NP_598 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
       60        70        80        90       100       110        

       120             130       140       150       160        170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
       . :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  :
NP_598 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
      120       130        140       150       160       170       

              180       190       200       210           220      
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
       : .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   .
NP_598 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
       180       190        200         210       220       230    

        230       240       250       260                          
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
       . . :  :: ::..... :..::.::  . :: :       .::                
NP_598 LAREASSLKYLAEEFSIPVILTNQITT-HLSGALASQADLVSPADDLSLSEGTSGSSCVI
          240       250       260        270       280       290   

             270       280       290       300       310       320 
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
         :: .::   .::..:. ...      ::.  .:::   :  :  .:    .  .:.. 
NP_598 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
           300       310            320         330           340  

               
pF1KB6 TLQGDQT 
       .:::..  
NP_598 VLQGQEKP
            350

>>NP_001308741 (OMIM: 602948) DNA repair protein RAD51 h  (351 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 369.9  bits: 76.8 E(85289): 7.3e-14
Smith-Waterman score: 325; 28.1% identity (57.6% similar) in 356 aa overlap (11-327:10-348)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :   ....
NP_001  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
                10        20        30        40        50         

               70           80        90       100       110       
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
         :  .. :   .  ..   : :.::: ...::. : .:.  : .:::.: :: :::: :
NP_001 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
       60        70        80        90       100       110        

       120             130       140       150       160        170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
       . :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  :
NP_001 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
      120       130        140       150       160       170       

              180       190       200       210           220      
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
       : .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   .
NP_001 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
       180       190        200         210       220       230    

        230       240       250       260                          
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
       . . :  :: ::..... :..::.::  . :: :       .::                
NP_001 LAREASSLKYLAEEFSIPVILTNQITT-HLSGALASQADLVSPADDLSLSEGTSGSSCVI
          240       250       260        270       280       290   

             270       280       290       300       310       320 
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
         :: .::   .::..:. ...      ::.  .:::   :  :  .:    .  .:.. 
NP_001 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
           300       310            320         330           340  

                
pF1KB6 TLQGDQT  
       .:::..   
NP_001 VLQGSREFK
            350 




328 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:00:25 2016 done: Fri Nov  4 21:00:26 2016
 Total Scan time:  7.890 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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