Result of FASTA (ccds) for pF1KB6485
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6485, 328 aa
  1>>>pF1KB6485 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5574+/-0.000879; mu= 14.3521+/- 0.053
 mean_var=68.3590+/-14.055, 0's: 0 Z-trim(106.4): 23  B-trim: 361 in 1/50
 Lambda= 0.155123
 statistics sampled from 8972 (8989) to 8972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.276), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17        ( 328) 2075 473.4 1.1e-133
CCDS45646.1 RAD51D gene_id:5892|Hs108|chr17        ( 348) 1531 351.6 5.2e-97
CCDS11288.1 RAD51D gene_id:5892|Hs108|chr17        ( 216) 1069 248.1 4.6e-66
CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14         ( 350)  311 78.6 8.2e-15
CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14         ( 384)  311 78.6 8.8e-15
CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14        ( 425)  311 78.6 9.6e-15


>>CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17             (328 aa)
 initn: 2075 init1: 2075 opt: 2075  Z-score: 2513.4  bits: 473.4 E(32554): 1.1e-133
Smith-Waterman score: 2075; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
              250       260       270       280       290       300

              310       320        
pF1KB6 QPTGFQEMVDIGTWGTSEQSATLQGDQT
       ::::::::::::::::::::::::::::
CCDS11 QPTGFQEMVDIGTWGTSEQSATLQGDQT
              310       320        

>>CCDS45646.1 RAD51D gene_id:5892|Hs108|chr17             (348 aa)
 initn: 1824 init1: 1530 opt: 1531  Z-score: 1855.1  bits: 351.6 E(32554): 5.2e-97
Smith-Waterman score: 1783; 85.6% identity (89.4% similar) in 348 aa overlap (1-328:1-348)

               10        20        30        40        50          
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA-
       ::::::::::::::::::::::::::::::::::::::::::::::::.  :     :. 
CCDS45 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG
               10        20        30        40        50        60

       60          70              80                  90       100
pF1KB6 -QFSAFPV--NGADLYEELKTS------TAILS--------TGIGS--LDKLLDAGLYTG
        :.   :.  . . . . :: .      :  ::        :....  ::::::::::::
CCDS45 LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KB6 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KB6 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
              190       200       210       220       230       240

              230       240       250       260       270       280
pF1KB6 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
              250       260       270       280       290       300

              290       300       310       320        
pF1KB6 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
              310       320       330       340        

>>CCDS11288.1 RAD51D gene_id:5892|Hs108|chr17             (216 aa)
 initn: 1069 init1: 1069 opt: 1069  Z-score: 1299.5  bits: 248.1 E(32554): 4.6e-66
Smith-Waterman score: 1141; 65.9% identity (65.9% similar) in 328 aa overlap (1-328:1-216)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS11 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKA-----------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB6 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
                                                                   
CCDS11 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB6 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
                                                :::::::::::::::::::
CCDS11 -----------------------------------------EALRRIQVVHAFDIFQMLD
                                               50        60        

              190       200       210       220       230       240
pF1KB6 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
       70        80        90       100       110       120        

              250       260       270       280       290       300
pF1KB6 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
      130       140       150       160       170       180        

              310       320        
pF1KB6 QPTGFQEMVDIGTWGTSEQSATLQGDQT
       ::::::::::::::::::::::::::::
CCDS11 QPTGFQEMVDIGTWGTSEQSATLQGDQT
      190       200       210      

>>CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14              (350 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 379.5  bits: 78.6 E(32554): 8.2e-15
Smith-Waterman score: 326; 28.1% identity (57.6% similar) in 356 aa overlap (11-327:10-348)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :   ....
CCDS97  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELL-CMVSR
                10        20        30        40        50         

               70           80        90       100       110       
pF1KB6 FSAFPVNGADLYEELKT---STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC
         :  .. :   .  ..   : :.::: ...::. : .:.  : .:::.: :: :::: :
CCDS97 ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
       60        70        80        90       100       110        

       120             130       140       150       160        170
pF1KB6 LCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-V
       . :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  :
CCDS97 IMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKV
      120       130        140       150       160       170       

              180       190       200       210           220      
pF1KB6 HAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLAL
       : .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   .
CCDS97 HLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKF
       180       190        200         210       220       230    

        230       240       250       260                          
pF1KB6 MMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA----------------
       . . :  :: ::..... :..::.::  . :: :       .::                
CCDS97 LAREASSLKYLAEEFSIPVILTNQITT-HLSGALASQADLVSPADDLSLSEGTSGSSCVI
          240       250       260        270       280       290   

             270       280       290       300       310       320 
pF1KB6 --LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSA
         :: .::   .::..:. ...      ::.  .:::   :  :  .:    .  .:.. 
CCDS97 AALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP--FTSFV----YTIKEEGL
           300       310            320         330           340  

               
pF1KB6 TLQGDQT 
       .:::..  
CCDS97 VLQGQEKP
            350

>>CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14              (384 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 378.8  bits: 78.6 E(32554): 8.8e-15
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (11-305:10-333)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :  . ...
CCDS97  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
                10        20        30        40        50         

                   70        80        90       100       110      
pF1KB6 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
        .  :    . :    .    : :.::: ...::. : .:.  : .:::.: :: :::: 
CCDS97 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
        60        70        80        90       100       110       

        120             130       140       150       160          
pF1KB6 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
       :. :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  
CCDS97 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
       120       130        140       150       160       170      

     170       180       190       200       210           220     
pF1KB6 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
       :: .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   
CCDS97 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
        180       190        200         210       220       230   

         230       240       250       260                         
pF1KB6 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
       .. . :  :: ::..... :..::.::    :: :       .::               
CCDS97 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
           240       250       260        270       280       290  

              270       280       290       300        310         
pF1KB6 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
          :: .::   .::..:. ...      ::.  .:::   : :.:              
CCDS97 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQET
            300       310            320       330       340       

     320                                    
pF1KB6 SATLQGDQT                            
                                            
CCDS97 TFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
       350       360       370       380    

>>CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14             (425 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 378.1  bits: 78.6 E(32554): 9.6e-15
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (11-305:10-333)

               10        20        30        40        50        60
pF1KB6 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :  . ...
CCDS81  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
                10        20        30        40        50         

                   70        80        90       100       110      
pF1KB6 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
        .  :    . :    .    : :.::: ...::. : .:.  : .:::.: :: :::: 
CCDS81 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
        60        70        80        90       100       110       

        120             130       140       150       160          
pF1KB6 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
       :. :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  
CCDS81 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
       120       130        140       150       160       170      

     170       180       190       200       210           220     
pF1KB6 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
       :: .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   
CCDS81 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
        180       190        200         210       220       230   

         230       240       250       260                         
pF1KB6 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
       .. . :  :: ::..... :..::.::    :: :       .::               
CCDS81 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
           240       250       260        270       280       290  

              270       280       290       300        310         
pF1KB6 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
          :: .::   .::..:. ...      ::.  .:::   : :.:              
CCDS81 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQVV
            300       310            320       330       340       

     320                                                           
pF1KB6 SATLQGDQT                                                   
                                                                   
CCDS81 RTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALP
       350       360       370       380       390       400       




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:00:24 2016 done: Fri Nov  4 21:00:25 2016
 Total Scan time:  2.790 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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