Result of FASTA (omim) for pF1KB7253
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7253, 419 aa
  1>>>pF1KB7253     419 - 419 aa - 419 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4370+/-0.000354; mu= -5.8250+/- 0.022
 mean_var=314.6254+/-63.726, 0's: 0 Z-trim(123.3): 14  B-trim: 14 in 1/54
 Lambda= 0.072307
 statistics sampled from 44674 (44689) to 44674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.484), width:  16
 Scan time:  4.750

The best scores are:                                      opt bits E(92320)
NP_056432 (OMIM: 606902) pygopus homolog 1 isoform ( 419) 2981 324.3 3.8e-88
NP_001354735 (OMIM: 606902) pygopus homolog 1 isof ( 419) 2883 314.1 4.6e-85
NP_001317255 (OMIM: 606902) pygopus homolog 1 isof ( 419) 2883 314.1 4.6e-85
NP_612157 (OMIM: 606903) pygopus homolog 2 [Homo s ( 406)  556 71.3 5.3e-12


>>NP_056432 (OMIM: 606902) pygopus homolog 1 isoform 1 [  (419 aa)
 initn: 2981 init1: 2981 opt: 2981  Z-score: 1704.0  bits: 324.3 E(92320): 3.8e-88
Smith-Waterman score: 2981; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB7 MPAENSPAPAYKVSSHGGDSGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLSEYAPPPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MPAENSPAPAYKVSSHGGDSGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLSEYAPPPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AENFSQIPPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFGQAKAPPPKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AENFSQIPPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFGQAKAPPPKQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 FTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 FTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDPVYPCGICTNEVNDDQDAILCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDPVYPCGICTNEVNDDQDAILCE
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB7 ASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPSAVGSDA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPSAVGSDA
              370       380       390       400       410         

>>NP_001354735 (OMIM: 606902) pygopus homolog 1 isoform   (419 aa)
 initn: 2883 init1: 2883 opt: 2883  Z-score: 1648.8  bits: 314.1 E(92320): 4.6e-85
Smith-Waterman score: 2883; 97.1% identity (97.6% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB7 MPAENSPAPAYKVSSHGGDSGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLSEYAPPPN
       : ::.   :      .::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAEQEKDPISLKRVRGGDSGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLSEYAPPPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AENFSQIPPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFGQAKAPPPKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AENFSQIPPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFGQAKAPPPKQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 FTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDPVYPCGICTNEVNDDQDAILCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDPVYPCGICTNEVNDDQDAILCE
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB7 ASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPSAVGSDA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPSAVGSDA
              370       380       390       400       410         

>>NP_001317255 (OMIM: 606902) pygopus homolog 1 isoform   (419 aa)
 initn: 2883 init1: 2883 opt: 2883  Z-score: 1648.8  bits: 314.1 E(92320): 4.6e-85
Smith-Waterman score: 2883; 97.1% identity (97.6% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB7 MPAENSPAPAYKVSSHGGDSGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLSEYAPPPN
       : ::.   :      .::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAEQEKDPISLKRVRGGDSGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLSEYAPPPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AENFSQIPPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFGQAKAPPPKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AENFSQIPPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFGQAKAPPPKQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 FTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDPVYPCGICTNEVNDDQDAILCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDPVYPCGICTNEVNDDQDAILCE
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB7 ASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPSAVGSDA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPSAVGSDA
              370       380       390       400       410         

>>NP_612157 (OMIM: 606903) pygopus homolog 2 [Homo sapie  (406 aa)
 initn: 634 init1: 407 opt: 556  Z-score: 337.1  bits: 71.3 E(92320): 5.3e-12
Smith-Waterman score: 874; 37.6% identity (59.2% similar) in 431 aa overlap (3-418:2-405)

               10               20        30        40        50   
pF1KB7 MPAENSPAPAYKVSSHGGD-------SGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLS
         : ..: :  :. . ::        :     :  :.:. ::.::.::.:::::..  :.
NP_612  MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLT
                10        20        30        40        50         

            60        70        80        90       100        110  
pF1KB7 EYAPPPNPNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFR-MPPHVPP
       :.::::.:  :::::.:::.:...  . :   .. :.::   : :::. .   :  .:::
NP_612 EFAPPPTPMVDHLVASNPFEDDFG--APKVGVAAPPFLGSPVP-FGGFRVQGGMAGQVPP
      60        70        80          90       100        110      

            120        130       140        150       160       170
pF1KB7 RMSSPYCG-PYSLRNQPHPFPQNPLGMGFNRP-HAFNFGPHDNSSFGNPSYNNALSQNVN
        .:.   : :  :: :: ::: ::.: .:: : .. .. :  : .: .  .:. :.:: .
NP_612 GYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFS
        120       130       140       150       160       170      

              180       190       200       210       220       230
pF1KB7 MPNQHFRQNPAENFSQIPPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFG
        :. ..  .:. .:.   :. .  ...:  :            .:   .. :  :   ::
NP_612 PPSGQMMPGPVGGFG---PMISPTMGQPPRAE----------LGPPSLSQRFAQPGAPFG
        180       190          200                 210       220   

              240       250        260       270       280         
pF1KB7 QAKAPPPKQDFTQGATKNTNQNSSAHP-PHLNMDDTVNQSNIELKNVNRNNAVNQENSRS
           : : :   ::   .   :.:  : :  ..    .... .  :   ..:  ::   .
NP_612 ----PSPLQRPGQG-LPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSG
               230        240       250       260       270        

     290       300       310       320       330           340     
pF1KB7 SSTEATNNNPANGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDP----VYPCGI
       : . :.:.:  .   :.  .  :. :: .    .:..      : :. .:    ::::: 
NP_612 SPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG------GGSGPQPPPGLVYPCGA
      280       290       300       310             320       330  

         350       360       370       380       390       400     
pF1KB7 CTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMR
       : .::::::::::::::::::::: ::::::.::::::.::::::.:: :.  :..: . 
NP_612 CRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEIQSVY
            340       350       360       370       380       390  

         410         
pF1KB7 TRETFGPSAVGSDA
        :: .:  ....: 
NP_612 IREGMGQLVAANDG
            400      




419 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:57:08 2019 done: Thu Oct 24 21:57:09 2019
 Total Scan time:  4.750 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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