FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7064, 674 aa
  1>>>pF1KB7064 674 - 674 aa - 674 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3904+/-0.000814; mu= 2.8504+/- 0.049
 mean_var=243.8798+/-48.131, 0's: 0 Z-trim(116.7): 26  B-trim: 8 in 1/53
 Lambda= 0.082127
 statistics sampled from 17310 (17335) to 17310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.532), width:  16
 Scan time:  4.110

The best scores are:                                      opt bits E(32554)
CCDS12738.1 PPP1R15A gene_id:23645|Hs108|chr19     ( 674) 4653 564.3  2e-160


>>CCDS12738.1 PPP1R15A gene_id:23645|Hs108|chr19          (674 aa)
 initn: 4653 init1: 4653 opt: 4653  Z-score: 2993.4  bits: 564.3 E(32554): 2e-160
Smith-Waterman score: 4653; 100.0% identity (100.0% similar) in 674 aa overlap (1-674:1-674)

               10        20        30        40        50        60
pF1KB7 MAPGQAPHQATPWRDAHPFFLLSPVMGLLSRAWSRLRGLGPLEPWLVEAVKGAALVEAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPGQAPHQATPWRDAHPFFLLSPVMGLLSRAWSRLRGLGPLEPWLVEAVKGAALVEAGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EGEARTPLAIPHTPWGRRPEEEAEDSGGPGEDRETLGLKTSSSLPEAWGLLDDDDGMYGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EGEARTPLAIPHTPWGRRPEEEAEDSGGPGEDRETLGLKTSSSLPEAWGLLDDDDGMYGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 REATSVPRGQGSQFADGQRAPLSPSLLIRTLQGSDKNPGEEKAEEEGVAEEEGVNKFSYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 REATSVPRGQGSQFADGQRAPLSPSLLIRTLQGSDKNPGEEKAEEEGVAEEEGVNKFSYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSHRECCPAVEEEDDEEAVKKEAHRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PSHRECCPAVEEEDDEEAVKKEAHRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KGARKTSVSPRSSGSDPRSWEYRSGEASEEKEEKAHKETGKGEAAPGPQSSAPAQRPQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KGARKTSVSPRSSGSDPRSWEYRSGEASEEKEEKAHKETGKGEAAPGPQSSAPAQRPQLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SWWCQPSDEEEGEVKALGAAEKDGEAECPPCIPPPSAFLKAWVYWPGEDTEEEEDEEEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SWWCQPSDEEEGEVKALGAAEKDGEAECPPCIPPPSAFLKAWVYWPGEDTEEEEDEEEDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 DSDSGSDEEEGEAEASSSTPATGVFLKSWVYQPGEDTEEEEDEDSDTGSAEDEREAETSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DSDSGSDEEEGEAEASSSTPATGVFLKSWVYQPGEDTEEEEDEDSDTGSAEDEREAETSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 STPPASAFLKAWVYRPGEDTEEEEDEDVDSEDKEDDSEAALGEAESDPHPSHPDQRAHFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 STPPASAFLKAWVYRPGEDTEEEEDEDVDSEDKEDDSEAALGEAESDPHPSHPDQRAHFR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 GWGYRPGKETEEEEAAEDWGEAEPCPFRVAIYVPGEKPPPPWAPPRLPLRLQRRLKRPET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GWGYRPGKETEEEEAAEDWGEAEPCPFRVAIYVPGEKPPPPWAPPRLPLRLQRRLKRPET
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 PTHDPDPETPLKARKVRFSEKVTVHFLAVWAGPAQAARQGPWEQLARDRSRFARRITQAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PTHDPDPETPLKARKVRFSEKVTVHFLAVWAGPAQAARQGPWEQLARDRSRFARRITQAQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 EELSPCLTPAARARAWARLRNPPLAPIPALTQTLPSSSVPSSPVQTTPLSQAVATPSRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EELSPCLTPAARARAWARLRNPPLAPIPALTQTLPSSSVPSSPVQTTPLSQAVATPSRSS
              610       620       630       640       650       660

              670    
pF1KB7 AAAAAALDLSGRRG
       ::::::::::::::
CCDS12 AAAAAALDLSGRRG
              670    




674 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:10:11 2016 done: Sat Nov  5 01:10:11 2016
 Total Scan time:  4.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]