FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7581, 175 aa
  1>>>pF1KB7581 175 - 175 aa - 175 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3515+/-0.000244; mu= 14.3568+/- 0.015
 mean_var=78.3570+/-15.557, 0's: 0 Z-trim(122.4): 3  B-trim: 66 in 1/54
 Lambda= 0.144889
 statistics sampled from 40345 (40348) to 40345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.473), width:  16
 Scan time:  4.060

The best scores are:                                      opt bits E(85289)
NP_009152 (OMIM: 609176) polyamine-modulated facto ( 205)  791 173.4 1.9e-43
NP_001186582 (OMIM: 609176) polyamine-modulated fa ( 180)  790 173.2   2e-43
NP_001186583 (OMIM: 609176) polyamine-modulated fa ( 207)  525 117.8   1e-26


>>NP_009152 (OMIM: 609176) polyamine-modulated factor 1   (205 aa)
 initn: 791 init1: 791 opt: 791  Z-score: 901.0  bits: 173.4 E(85289): 1.9e-43
Smith-Waterman score: 791; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CYKCFYQLQPAMTQRIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_009 CYKCFYQLQPAMTQQIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB7 PAWCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV     
       :::                                                         
NP_009 PAWRPSGIPEKDLHSVMAPYFLQQRDTLRRHVQKQEAENQQLADAVLAGRRQVEELQLQV
              130       140       150       160       170       180

>>NP_001186582 (OMIM: 609176) polyamine-modulated factor  (180 aa)
 initn: 793 init1: 776 opt: 790  Z-score: 900.7  bits: 173.2 E(85289): 2e-43
Smith-Waterman score: 790; 78.4% identity (84.4% similar) in 167 aa overlap (1-159:1-167)

               10        20        30        40        50        60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CYKCFYQLQPAMTQRIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_001 CYKCFYQLQPAMTQQIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
               70        80        90       100       110       120

                      130       140       150       160       170  
pF1KB7 PA--------WCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQE
       ::         :. .: :...      :.::.  :   .. : :  :             
NP_001 PACNGTPCGAMCRNRRPRTSSWQMPSWQGGGRWRSCSYRSRPSSRPGRLYTENRGSWLLC
              130       140       150       160       170       180

          
pF1KB7 GGV

>>NP_001186583 (OMIM: 609176) polyamine-modulated factor  (207 aa)
 initn: 541 init1: 337 opt: 525  Z-score: 600.5  bits: 117.8 E(85289): 1e-26
Smith-Waterman score: 525; 73.8% identity (81.0% similar) in 126 aa overlap (1-123:1-125)

               10        20        30        40        50        60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::   .  
NP_001 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSSPLLHW
               10        20        30        40        50        60

               70        80           90       100       110       
pF1KB7 CYKCFYQLQPAMTQRIYDKF---IAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKV
         .   .: :.  : . . :     .:  . .::::::::::::::::::::::::::::
NP_001 DGSAGPRL-PSGGQSVKQAFSWAACRLPQGRKEEISDIKEEGNLEAVLNALDKIVEEGKV
                70        80        90       100       110         

       120       130       140       150       160       170       
pF1KB7 RKEPAWCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV  
       ::::::                                                      
NP_001 RKEPAWRPSGIPEKDLHSVMAPYFLQQRDTLRRHVQKQEAENQQLADAVLAGRRQVEELQ
     120       130       140       150       160       170         




175 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:16:21 2016 done: Fri Nov  4 20:16:21 2016
 Total Scan time:  4.060 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]