GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:41:57

Sequence gi568815597f:19984831_20190689 : 205859 bp : 46.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +  13244  13501  258  1  0   72   53   165 0.889   6.53
 1.02 PlyA +  13692  13697    6                              -0.45

 2.00 Prom +  13771  13810   40                              -2.26
 2.01 Init +  21776  21976  201  1  0   60   86    95 0.091   5.38
 2.02 Term +  27823  28005  183  0  0   39   38   123 0.222  -0.06
 2.03 PlyA +  33797  33802    6                               1.05

 3.03 PlyA -  34494  34489    6                               1.05
 3.02 Term -  40064  39888  177  2  0   37   49   133 0.659   1.99
 3.01 Init -  42430  42371   60  1  0   74   82    30 0.510   2.25
 3.00 Prom -  44690  44651   40                               0.34

 4.00 Prom +  68565  68604   40                              -2.56
 4.01 Init +  89193  89235   43  2  1   72   69    58 0.357   2.88
 4.02 Term +  91931  92046  116  0  2   86   33   108 0.424   3.83
 4.03 PlyA +  92089  92094    6                               1.05

 5.00 Prom +  98140  98179   40                              -3.96
 5.01 Init + 101237 101397  161  1  2   96   85   248 0.816  24.60
 5.02 Intr + 104959 105065  107  1  2   54   91   101 0.999   6.86
 5.03 Term + 105738 105862  125  1  2  117   47   124 0.999   9.75
 5.04 PlyA + 106309 106314    6                               1.05

 6.08 PlyA - 106831 106826    6                               1.05
 6.07 Term - 108460 108283  178  0  1   23   36   280 0.981  13.46
 6.06 Intr - 122873 122707  167  2  2   81  103    84 0.708   7.96
 6.05 Intr - 128780 128645  136  1  1   78   22    85 0.373   1.47
 6.04 Intr - 129429 129291  139  1  1   94  -17   202 0.554   9.82
 6.03 Intr - 130783 130677  107  0  2   94   68   127 0.995  11.16
 6.02 Intr - 131647 131503  145  2  1   77   53   150 0.988   9.74
 6.01 Init - 134668 134629   40  1  1   82  105    84 0.766   7.98
 6.00 Prom - 137807 137768   40                              -3.66

 7.00 Prom + 138390 138429   40                              -4.76
 7.01 Init + 141287 141300   14  1  2   72  115     8 0.145   1.52
 7.02 Intr + 155336 155388   53  2  2  114  101    89 0.816  11.35
 7.03 Intr + 158616 158760  145  1  1   82   82   231 0.495  21.24
 7.04 Intr + 159750 159859  110  0  2  120   73   193 0.999  20.93
 7.05 Intr + 163360 163526  167  2  2   94   26   274 0.979  21.48
 7.06 Intr + 164963 165147  185  1  2   98   11    82 0.032   0.09
 7.07 Intr + 170742 171024  283  0  1   88   49   162 0.067   9.72
 7.08 Intr + 172125 172806  682  2  1   44   77   346 0.546  20.26
 7.09 Intr + 173277 173546  270  1  0   39  116   122 0.276   7.61
 7.10 Term + 174800 175044  245  0  2  107   42    76 0.245   0.96
 7.11 PlyA + 175716 175721    6                               1.05

 8.04 PlyA - 178248 178243    6                               1.05
 8.03 Term - 179327 179161  167  0  2  110   50   148 0.857  11.28
 8.02 Intr - 188067 187964  104  2  2    5   59   177 0.694   6.32
 8.01 Init - 190364 190177  188  2  2   74   94   159 0.483  11.79
 8.00 Prom - 191033 190994   40                              -7.46

 9.00 Prom + 191251 191290   40                             -10.55
 9.01 Init + 191924 192002   79  1  1   70   50    76 0.422   3.22
 9.02 Intr + 194122 194180   59  2  2   54   86   103 0.351   5.30
 9.03 Intr + 196697 196888  192  1  0   15  121    65 0.408   2.19
 9.04 Intr + 197156 197248   93  1  0   69  113    64 0.983   7.16
 9.05 Intr + 198354 198417   64  2  1   52   94    94 0.926   4.69
 9.06 Term + 201202 201323  122  2  2   76   43    63 0.793  -0.76
 9.07 PlyA + 205556 205561    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 166244 166348  105  1  0  111   52    62 0.917   3.31


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_1|85_aa
MGQVWAVIHSTLELFHTDDAEEGEYNEVTEEVTDQVYLPAKAKAAKEGEVHPYPCVPPHY
FEENDPPDLSFPENTGRKVVAPVTV

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_1|258_bp
atgggacaagtgtgggctgtgattcattccaccttggaactttttcacactgatgatgcg
gaggaaggagagtataatgaagtaacagaagaggttacagaccaggtttatttgccagct
aaagctaaagcggcaaaggagggagaggttcatccctacccttgtgttccccctcattat
tttgaagaaaatgaccctccagatctttcttttccggagaacactgggcgaaaagtagtt
gccccagtgactgtttga

>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_2|127_aa
MSELLFTIATKRIKYPGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGIMNIM
KMAIMPKFCGLWGDPTVMVPPDILMESLCGSLDAMAPLGIALVEAVCSGPTPVAVLFLGP
KALWDIL

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_2|384_bp
atgagtgaactcctattcacaattgctacaaagagaataaaatacccaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaa
gaggacacaaataaatggaagaacattccatgctcatggataggaataatgaatatcatg
aaaatggccataatgcccaagttttgtggtctttggggtgaccccactgtcatggttcca
ccagacatccttatggagtctctctgtggcagtcttgatgccatggccccactgggcatt
gccttagtggaggctgtctgcagcggccccacccctgtggcagttctcttcctgggccct
aaggctctctgggacatactttga

>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_3|78_aa
MNNIDRPLARFTKKRREKIQMQKTRLTKSRIIKIKTFRKISIEGTYLKIIKAIYDKPTVN
IILNKEKLKAFPLRTGTR

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_3|237_bp
atgaacaatattgatagaccattagcaagattcaccaagaaaagaagagagaagatccaa
atgcagaaaactcgtttgacaaaatcaagaatcataaagattaaaaccttcagaaaaatc
agcatagaagggacatacctcaagataataaaagccatctatgacaagcccacagtcaac
attatactgaacaaggaaaagttgaaagcatttcccctgagaactggaacaagataa

>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_4|52_aa
MTVSAMKGKNRVTLGNARVDSISDEFYNIPETGKLPVERRIMEDFPEEEDLM

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_4|159_bp
atgacggtcagtgccatgaaggggaaaaacagggtgaccttgggaaatgccagagtggac
agcatatcagatgagttctataacattccagagacaggtaagctccctgtggaaagaagg
atcatggaagacttcccggaggaggaggacttgatgtag

>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_5|130_aa
MGYLPGVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGTDWCCWAHD
HCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKRNLRSYNPQ
YQYFPNILCS

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_5|393_bp
atgggctatcttccaggtgtgcctgctgtgcaaggaggcttgctggacctaaaatcaatg
atcgagaaggtgacagggaagaacgccctgacaaactacggcttctacggctgttactgc
ggctggggcggccgaggaacccccaaggatggcaccgattggtgctgttgggcgcatgac
cactgctatgggcggctggaggagaagggctgcaacattcgcacacagtcctacaaatac
agattcgcgtggggcgtggtcacctgcgagcccgggcccttctgccatgtgaacctctgt
gcctgtgaccggaagctcgtctactgcctcaagagaaacctacggagctacaacccacag
taccaatactttcccaacatcctctgctcctag

>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_6|303_aa
MELALLCGLVVMAGVIPIQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQPKDAT
DWCCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHCSDKGSWCEQQLCACDKEVAFCLK
RNLDTYQKRLRFYWRPHCRGQTPGQALKSLQVEAMPVLNSVASLVPKATPEPRRSSINPS
WVKPRQSRQEAIEVGSKCILLVGCLCWSPFQDPGLGWGERKPKLSLFPPQGFSPEMMQQL
SLALRLGDKSKIPSEEEEGEGEGRGRRGGGREEEEEEEEEEEEEEEEEEEEEYPYTSYLI
SPP

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_6|912_bp
atggaacttgcactgctgtgtgggctggtggtgatggctggtgtgattccaatccagggc
gggatcctgaacctgaacaagatggtcaagcaagtgactgggaaaatgcccatcctctcc
tactggccctacggctgtcactgcggactaggtggcagaggccaacccaaagatgccacg
gactggtgctgccagacccatgactgctgctatgaccacctgaagacccaggggtgcagc
atctacaaggactattacagatacaacttttcccaggggaacatccactgctctgacaag
ggaagctggtgtgagcagcagctgtgtgcctgtgacaaggaggtggccttctgcctgaag
cgcaacctggacacctaccagaagcgactgcgtttctactggcggccccactgccggggg
cagacccctgggcaagctctgaagtccctgcaggtggaggccatgcctgtcttaaactca
gttgcatccctggtgcccaaagcaacaccagaaccaagaaggagctccataaatccttct
tgggtgaagcctagacaaagccgccaggaggccattgaagtggggtcaaagtgcattctg
ctcgtgggctgcctctgctggagccccttccaggatccagggctaggctggggtgagagg
aagccaaagctgtccctgttccctcctcaaggattcagccctgagatgatgcagcagctg
tcactggctctgcgcctgggtgacaagagcaaaattccatctgaagaagaagaaggagaa
ggagaaggaagaggaagaagaggaggaggaagggaggaagaagaggaggaggaagaggag
gaagaagaggaggaggaagaagaagaagaagaagaatatccatacacctcctacctcatc
agcccaccttag

>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_7|717_aa
MTGTWSSLGMKKFFTVAILAGSVLSTAHGSLLNLKAMVEAVTGRSAILSFVGYGCYCGLG
GRGQPKDEVDWCCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIVCSDLNKTECDKQTC
MCDKNMVLCLMNQTYREEYRGFLNVYCQGPTPNCSIYEPPPEEVHLTFLLTCPSLNSGSA
ASTEPAPPARKPLKPPSARTQQPPASSPGSAPGAPLSLGRESREGKNNTPSYTGKPQAII
DLLQTIIQTHNPTWADCHQVLMYLFNTDERRRVLQAATKWLEEHVPADYQNPQEYVRIQL
PGTDPQWDPDERQYAKAKPPGTKDYRLIQDLHLVNQATVTLHPTVPNPYTLLWLLPAEDS
WFTYLGLKDAFFSIRLAPESQKLFAFQWEDPGSGVTTQYTWTQLPQGFKNSTTIFGEALA
RDLQKFPTRDLGCVLLQYVDDLLLGHLMAVGCAKGMDTLLWHLEDCGYKVSKKKAQICQQ
EVRYLGFTIQQGERSLGSERMQVICNLPEPKTKRQVREFLGAVGFCRLWIPNFAVLAKPL
YEVIKGVSESPVERNYVEVLDTVYSSRPDLQDHPWTSVDWELYMDRSSFVNPQGERCAGY
AVVTLDAVTEAKSLPQDTSAQKVKLIALIWALELSEGDRVWITDWNIASLQPRWRGPQTI
VLTTPTAIKVEGIPAWIHHSHVKPKASETWEVRPSLDNPCKMTLKKMTSPAPVTPGS

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_7|2154_bp
atgactggcacatggtctagcctgggtatgaagaagttcttcaccgtggccatccttgct
ggcagcgttctgtccacagctcacggcagcctgctcaacctgaaggccatggtggaggcc
gtcacagggaggagcgccatcctgtccttcgtgggctacggttgctactgtgggctgggg
ggccgtggccagcccaaggatgaggtggactggtgctgccacgcccacgactgctgctac
caggaactctttgaccaaggctgtcacccctatgtggaccactatgatcacaccatcgag
aacaacactgagatagtctgcagtgacctcaacaagacagagtgtgacaagcagacatgc
atgtgtgacaagaacatggttctgtgcctcatgaaccagacgtaccgagaggagtaccgt
ggcttcctcaatgtctactgccagggccccacgcccaactgcagcatctatgaaccgccc
cctgaggaggtgcaccttaccttcctccttacctgcccgagcctcaactcagggtcagca
gcctccacggagccagccccacctgcccgaaaaccactgaagccaccctccgcccggact
caacagccgccagcaagctcgcctggcagtgcccctggagcaccattgtcgctggggagg
gagagccgggaagggaagaacaataccccatcctataccggaaagcctcaagctataatt
gatttgctccaaactataatccagacccacaaccccacctgggctgattgccaccaggtg
ctcatgtacctctttaacacagatgaaaggaggagagtgctccaagcagcaactaagtgg
ctggaagaacatgttcctgctgattaccaaaacccccaagagtatgtgaggatccaatta
ccaggaacagacccccagtgggacccagatgaaagacagtatgcaaaggctaaaccgcca
gggaccaaggactacaggctgatacaggacttgcacttggtcaatcaagctacggtgact
ttacatccaacagtacctaacccatacacattgttgtggttgctgccagctgaggacagc
tggttcacctacctgggcctgaaggacgctttctttagcatcagactagcccctgagagc
cagaaactgtttgcctttcagtgggaggatccagggtcaggtgtcaccactcagtacact
tggacccagcttccccaagggttcaagaactccaccaccatcttcggggaggccctggct
cgagacctgcaaaagtttcccaccagagacctaggctgcgtgttgctccagtatgtcgat
gacctcctgctgggacacctcatggcagttgggtgtgccaagggaatggataccctgctc
tggcacctggaggactgtgggtataaggtatccaagaagaaagctcagatatgtcaacag
gaggtacgttacttgggatttactatccaacagggggagcgcagcctgggatcagaaaga
atgcaggtcatttgcaacctaccggagcctaagaccaaaaggcaggtgagagaattctta
ggagctgtggggttctgcaggttatggatcccaaactttgcagtactggccaaacctctg
tacgaagtcataaagggagtgtcagagagcccagtcgaacgtaactatgtagaggtgttg
gacacagtttattctagcaggcctgacctccaagaccatccttggacatcagtagactgg
gagctgtacatggacaggagcagcttcgtcaacccacaaggagagaggtgtgcaggatat
gcagtggtaaccctggatgctgtcactgaagccaaatcattgccccaggatacttcagcc
caaaaggtcaaactcattgctttaatttgggccttagagctaagtgaaggtgatcgggta
tggatcacggattggaacatagcctccttgcagccacggtggagaggaccccagaccatc
gtcttgaccactcccacagccataaaggtagaaggaatcccagcctggattcaccacagc
catgtaaaacctaaagcatctgagacctgggaggtgagaccaagcttggacaacccatgc
aagatgactttgaagaagatgacaagccctgctccagtcacacctggaagctga

>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_8|152_aa
MLIATSFFLFFSSVVAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDD
TDRHSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQ
SVHCFKESLPTYEKNFKQFSSQPRCGRHKPWC

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_8|459_bp
atgctcattgcaacttccttcttcctttttttctcatcggtggtggcagcccccacccac
agcagtttctggcagtttcagaggagggtcaaacacatcacggggcgaagtgccttcttc
tcatattacggatatggctgctactgtgggcttggggataaagggatccccgtggatgac
actgacaggcacagcccctcatctccctctccctacgagaagctgaaggagttcagctgc
cagcctgtgttgaacagctaccagttccacatcgtcaatggcgcagtggtttgtggatgc
acccttggtcctggtgccagctgccactgcaggctgaaggcctgtgagtgtgacaagcaa
tccgtgcactgcttcaaagagagcctgcccacctatgagaaaaacttcaagcagttctcc
agccagcccaggtgtggcagacataagccctggtgctag

>gi568815597f:19984831_20190689|GENSCAN_predicted_peptide_9|202_aa
MDLDKPPLNESSKRVYQSPVDPKLFPRLGYQLLLTLSLTENHSLLQLSCFRAYPKHHREG
KTQNSPSSEAGITTLLDSCFRCSSNKLLSFISQAQQPDRNGVRAASLNRKRGGDNDSGPP
QNASKIPQAPEGENTWSTVAKPHNNPVLIITILEMRKLTSSEGRFRSRRKHVAPHPAALP
GRPGLFTSRTEPGRRRRMERNG

>gi568815597f:19984831_20190689|GENSCAN_predicted_CDS_9|609_bp
atggatctggacaaacctccactcaacgaatccagcaaaagagtctatcagtctccagta
gaccccaaactgtttcccaggctggggtaccagctgctgctgacgctgtccctcactgag
aaccactctctgctgcagctctcctgcttccgtgcctatccaaaacaccaccgagaaggc
aaaacccaaaacagcccaagcagcgaagcaggtatcacaacactcttagactcttgtttt
agatgcagttctaacaagctgctcagcttcatttctcaggcccagcagccggacaggaat
ggagtcagagcagcttctcttaataggaagagaggtggagacaatgattctggcccccca
cagaatgccagcaagattccacaagctcctgaaggtgaaaatacttggtcaacagtagcc
aagccgcacaacaatcctgtgcttatcatcaccattctagagatgcggaaactgacatcc
agcgaaggccggttccggtcacgccggaagcacgtggccccccaccctgcggcgttgccc
gggagaccagggttgtttaccagcaggacagagcccgggcgcaggcggcggatggagcgg
aacggctag