GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:54:25

Sequence gi568815586r:120222196_120426023 : 203828 bp : 49.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 Intr -    495    354  142  1  1   73   67   170 0.370  12.81
 1.04 Intr -    804    668  137  2  2   61   91   154 0.998  13.21
 1.03 Intr -   1638   1523  116  0  2   78   84   154 0.871  13.25
 1.02 Intr -   2182   1956  227  2  2  119   94   223 0.999  23.70
 1.01 Init -   8790   8640  151  0  1   66   47    91 0.261   3.01
 1.00 Prom -   9068   9029   40                              -4.56

 2.00 Prom +  11491  11530   40                              -3.16
 2.01 Init +  12556  12606   51  0  0   55   85    43 0.431   1.86
 2.02 Term +  26378  26548  171  1  0  105   39   122 0.207   6.83
 2.03 PlyA +  26944  26949    6                               1.05

 3.00 Prom +  33200  33239   40                              -4.16
 3.01 Init +  43433  43745  313  1  1   65   80   117 0.393   4.09
 3.02 Term +  60052  60521  470  2  2   36   48   609 0.945  46.84
 3.03 PlyA +  60640  60645    6                               1.05

 4.00 Prom +  71663  71702   40                              -1.06
 4.01 Init +  81373  81863  491  0  2   64   61   283 0.244  17.88
 4.02 Intr +  90225  90555  331  0  1   72   70   234 0.224  15.63
 4.03 Term +  90689  90841  153  1  0  112   47    54 0.971   1.62
 4.04 PlyA +  91026  91031    6                               1.05

 5.06 PlyA -  91330  91325    6                               1.05
 5.05 Term - 100122  99998  125  1  2  114   42   185 0.996  15.05
 5.04 Intr - 102866 102739  128  1  2  101   42   161 0.996  13.12
 5.03 Intr - 103825 103666  160  2  1   81  108   349 0.884  35.25
 5.02 Intr - 114072 113887  186  1  0   67   74    60 0.485   2.16
 5.01 Init - 114966 114912   55  0  1   92   87     0 0.368   1.89
 5.00 Prom - 115958 115919   40                              -6.06

 6.15 PlyA - 116353 116348    6                               1.05
 6.14 Term - 120910 120875   36  1  0   85   52    64 0.495  -0.16
 6.13 Intr - 124094 123940  155  0  2  106   84   252 0.953  26.39
 6.12 Intr - 125319 125251   69  1  0   94   99    92 0.994  10.05
 6.11 Intr - 125493 125467   27  1  0   99   63    34 0.510   0.09
 6.10 Intr - 131184 131104   81  1  0   97  131    91 0.991  13.91
 6.09 Intr - 134824 134707  118  1  1   35   59   121 0.687   3.94
 6.08 Intr - 135703 135621   83  2  2   92  101   107 0.981  11.76
 6.07 Intr - 136858 136810   49  1  1   66  105   123 0.916  10.05
 6.06 Intr - 140940 140848   93  0  0  112   98   150 0.994  18.56
 6.05 Intr - 142560 142519   42  0  0   97  100    14 0.737   1.94
 6.04 Intr - 145897 145813   85  0  1   53   79    84 0.608   3.82
 6.03 Intr - 146078 145997   82  0  1   35   99   134 0.986   7.90
 6.02 Intr - 146292 146222   71  2  2   66   40    64 0.626  -1.77
 6.01 Init - 146786 146638  149  2  2  121   84    97 0.680  10.17
 6.00 Prom - 161064 161025   40                              -4.76

 7.04 PlyA - 162175 162170    6                               1.05
 7.03 Term - 166829 166751   79  1  1   77   38   106 0.823   1.74
 7.02 Intr - 171163 171102   62  1  2   77  107    32 0.719   1.53
 7.01 Init - 173603 173550   54  2  0   92   90    59 0.815   5.78
 7.00 Prom - 189970 189931   40                              -1.96


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 105558 105525   34  0  1   64   96    58 0.861   2.51


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:120222196_120426023|GENSCAN_predicted_peptide_1|258_aa
MASNKTDKAPALWSLILGEETVDKNPNWQGRPLKETEFLVSVQALGPWAGDALLADLEST
TSHISKRPVFLSEETPYSYPTGNHTYQEIAVPPPVPPPPSSEALNGTILDPLDQWQPSSS
RFIHQQPQSSSPVYGSSAKTSSVSNPQDSVGSPCSRVGEEEHVYSFPNKQKSAEPSPTVM
STSLGSNLSELDRLLLELNAVQHNPPGFPAETNSPLGGKAGPLTKEKPKRNGGRGLEDVR
PSVESLLDELESSVPSPV

>gi568815586r:120222196_120426023|GENSCAN_predicted_CDS_1|774_bp
atggcatcgaacaagaccgacaaggcccctgctctctggagcttaattcttggagaggag
acagttgacaagaacccaaattggcagggaaggcccctcaaggagactgagttcctagtc
agtgtccaggccctaggtccctgggctggggacgccctgctggcggacttggagtctacc
acctcccacatctccaaacggcctgtgttcttgtcggaggagaccccctactcataccca
actggaaaccacacataccaggagattgccgtgccaccccccgtccccccacccccgtcc
agcgaggccctcaatggcacaatccttgaccccttagaccagtggcagcccagcagctcc
cgattcatccaccagcagcctcagtcctcatcacctgtgtacggctccagtgccaaaact
tccagtgtctccaaccctcaggacagtgttggctctccgtgctcccgagtgggtgaggag
gagcacgtctacagcttccccaacaagcagaaatcagctgagccttcacccaccgtaatg
agcacgtccctgggcagcaacctttctgaactcgaccgcctgctgctggaactgaacgct
gtacagcataacccgccaggcttccctgcagagactaacagccccttgggaggcaaagct
gggcccctgacgaaagagaagcctaagcggaatgggggccggggcctggaggacgtgcgg
cccagtgtggagagtctcttggatgaactggagagctccgtgcccagccccgtn

>gi568815586r:120222196_120426023|GENSCAN_predicted_peptide_2|73_aa
MDEKECESHPGGWDKINWHRVASPSLASRNQNRVYNVSKGLYATVTESNPSSTTNQQLTS
GKLLTSLCFSVVS

>gi568815586r:120222196_120426023|GENSCAN_predicted_CDS_2|222_bp
atggatgaaaaagaatgtgagagccatcctggtggctgggataaaataaactggcaccgc
gtggcatcaccctcattggcgagcaggaatcagaacagagtctacaatgtcagcaaaggg
ctgtatgcgacagtcactgaatccaatcccagctccaccactaatcagcaactaacctcg
ggcaagttgctcacctctctgtgcttcagtgtcgtcagctag

>gi568815586r:120222196_120426023|GENSCAN_predicted_peptide_3|260_aa
MAGPRAPAQGRASCPSRGRSSMPRNFSAASLGPERNAPPPRAPAPAPAARPAPGRPLCTR
APPPDTPASLLAPPPAHAGPAPAKSPGSGRRWAGRWRPLAAKRAASRTTANLERTFITIR
PDSMQCGLVGKIIKRFEQKGFRLVAMKFLPASEEHLKQHYIDLKDRPFFPGLVKYMNSGP
VVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISL
RFKPEELVDYKSCAHDWVYE

>gi568815586r:120222196_120426023|GENSCAN_predicted_CDS_3|783_bp
atggccggaccacgggcgccggctcagggtcgcgctagctgcccgtcccggggccgctcg
tctatgccccgcaacttttccgccgcgagcctcggcccggaacggaacgcgccgccgccg
cgcgcgcccgcgcccgcgcccgccgcgcgccccgcccccggccgccccctgtgcacgcgc
gccccgcccccggacacccccgcgagcttgctggccccgccccctgcgcacgctggtccc
gcccccgccaagagcccgggcagtgggcgtcgctgggcggggcggtggcgccccctcgcg
gctaagcgggcagcttcccggaccacggccaacctcgagcgcaccttcatcaccatcagg
ccggacagcatgcagtgcggcctggtgggcaagatcatcaagcgcttcgagcagaagggg
ttccgcctcgtggccatgaagttcctcccggcctctgaagaacacctgaagcagcactac
attgacctgaaggaccgcccattcttccctgggctggtgaagtacatgaactcagggccg
gtcgtggccatggtctgggaggggctgaacgtcgtgaagacaggccgagtgatgcttggg
gagaccaatccagcagattctaagccaggcaccattcgtggggacttttgcattcaggtt
ggcaggaacatcattcatggcagtgattcagtaaaaagtgctgaaaaagaaatcagccta
cggtttaagcctgaagaactggttgactacaagtcttgtgctcatgactgggtctatgaa
taa

>gi568815586r:120222196_120426023|GENSCAN_predicted_peptide_4|324_aa
MSFALTFRSAKGRWIANPSQPCSKASIGLFVPASPPLDPEKVKELQRFITLSKRLLVMTG
AGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQPN
PAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRAYCSVSVFLGSRVLCL
DCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPD
VVFFGDTVNPDKVDFVHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPT
RSDDLACLKLNSRCGELLPLIDPC

>gi568815586r:120222196_120426023|GENSCAN_predicted_CDS_4|975_bp
atgagctttgcgttgactttcaggtcagcaaaaggccgttggatcgcaaaccccagccag
ccgtgctcgaaagcctccattgggttatttgtgccagcaagtcctcctctggaccctgag
aaggtcaaagagttacagcgcttcatcaccctttccaagagactccttgtgatgactggg
gcaggaatctccaccgaatcggggataccagactacaggtcagaaaaagtggggctttat
gcccgcactgaccgcaggcccatccagcatggtgattttgtccggagtgccccaatccgc
cagcggtactgggcgagaaacttcgtaggctggcctcaattctcctcccaccagcctaac
cctgcacactgggctttgagcacctgggagaaactcggaaagctgtactggttggtgacc
caaaatgtggatgctttgcacaccaaggcggggagtcggcgcctgacagagctccacgga
tgcatggacagggcatactgttcagtcagcgtcttccttggttccagggtcctgtgcttg
gattgtggggaacagactccccggggggtgctgcaagagcgtttccaagtcctgaacccc
acctggagtgctgaggcccatggcctggctcctgatggtgacgtctttctctcagaggag
caagtccggagctttcaggtcccaacctgcgttcaatgtggaggccatctgaaaccagat
gtcgttttcttcggggacacagtgaaccctgacaaggttgattttgtgcacaagcgtgta
aaagaagccgactccctcttggtggtgggatcatccttgcaggtatactctggttacagg
tttatcctcactgcctgggagaagaagctcccgattgcaatactgaacattgggcccaca
cggtcggatgacttggcgtgtctgaaactgaattctcgttgtggagagttgctgcctttg
atagacccatgctga

>gi568815586r:120222196_120426023|GENSCAN_predicted_peptide_5|217_aa
MVPCIPATPAPAVAKRSQETRECRNKDTRQRDKRKDSWARGTTTTKSRRPVVALNVWLHC
YLLDTKQKGQGKECESSPMILAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYC
GLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNK
ECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS

>gi568815586r:120222196_120426023|GENSCAN_predicted_CDS_5|654_bp
atggtgccctgcatcccagccactccagctccagctgtggctaaaaggagccaagagacg
agagagtgtagaaataaagacacaagacaaagagataaaagaaaagacagctgggcccgg
ggaaccactaccaccaagtcacggagaccggtagtggccctgaatgtctggctgcactgt
tatttattggatacaaagcaaaaggggcagggtaaagagtgcgagtcatctccaatgata
ctggccgccgccgacagcggcatcagccctcgggccgtgtggcagttccgcaaaatgatc
aagtgcgtgatcccggggagtgaccccttcttggaatacaacaactacggctgctactgt
ggcttggggggctcaggcacccccgtggatgaactggacaagtgctgccagacacatgac
aactgctatgaccaggccaagaagctggacagctgtaaatttctgctggacaacccgtac
acccacacctattcatactcgtgctctggctcggcaatcacctgtagcagcaaaaacaaa
gagtgtgaggccttcatttgcaactgcgaccgcaacgctgccatctgcttttcaaaagct
ccatataacaaggcacacaagaacctggacaccaagaagtattgtcagagttga

>gi568815586r:120222196_120426023|GENSCAN_predicted_peptide_6|379_aa
MADPGPAGPPRSPGPRPLRPGARRSRGPFVSLLLPQQDVHRGTQLADYAGPARPSASRGP
GGRQEAQRERGEGEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ
SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML
MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS
RVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPGQDTDGVAQAIPLTAY
GPMAAAAAAAAVVRGTGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPS
TGFGHSLGRPSLQLTEDHE

>gi568815586r:120222196_120426023|GENSCAN_predicted_CDS_6|1140_bp
atggccgatccgggtccggccgggcctccccggagcccgggcccgcgccccctgcgccct
ggcgcccggcgctcacgcgggccctttgtgtctctcctcctcccgcagcaagatgttcat
cgggggactcagttggcagactacgcaggcccagctcggccctcggcttcccggggcccc
ggtgggcgccaggaggctcagcgggaacggggcgagggcgaagggctgcgcgaatacttc
ggccagttcggggaggtgaaggagtgtctggtgatgcgggaccccctgaccaagagatcc
aggggtttcggcttcgtcactttcatggaccaggcgggggtggataaagtgctggcgcaa
tcgcggcacgagctcgactccaaaacaattgaccctaaggtggccttccctcggcgagca
cagcccaagatggtgactcgaacgaagaagatctttgtgggggggctgtcggtgaacacc
acggtggaggacgtgaagcaatattttgagcagtttgggaaggtggacgacgccatgctg
atgtttgacaaaaccaccaaccggcaccgagggttcgggtttgtcacgtttgagagtgag
gacatcgtggagaaagtgtgtgaaattcattttcatgaaatcaacaacaaaatggtggaa
tgtaagaaagctcagccaaaggaggtgatgtcgccaacgggctcagcccgggggaggtct
cgagtcatgccctacggaatggacgccttcatgctgggcatcggcatgctgggttaccca
ggtttccaagccacaacctacgccagccggagttatacaggcctcgcccctggctacacc
taccagttccccggtcaggacacagatggtgtggcccaagccattcctctcactgcctac
ggaccaatggcggcggcagcggcggcagcggctgtggttcgagggacaggttcgactccc
agccgcacagggggcttcctggggaccaccagccccggccccatggccgagctctacggg
gcggccaaccaggactcgggggtcagcagttacatcagcgccgccagccctgcccccagc
accggcttcggccacagtcttgggcgccccagcctgcagctgactgaggaccacgagtga

>gi568815586r:120222196_120426023|GENSCAN_predicted_peptide_7|64_aa
MGRARWLTPVIPALLEAEVPIMHPLSACSLCHPVNALVRSRDADWLRAGPWAQRCVSIIV
RDCE

>gi568815586r:120222196_120426023|GENSCAN_predicted_CDS_7|195_bp
atgggccgggcacggtggctcacacctgtaatcccagcacttttggaggctgaggtcccc
atcatgcacccgctcagtgcttgttctctctgccatcctgtcaatgcccttgtgagatca
cgtgatgccgactggctccgagctgggccctgggctcagcgctgtgtgagcatcattgta
cgggactgtgaatag